Wall clock time and date at job start Tue Mar 31 2020 06:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47072 * 2 1 4 4 C 1.53002 * 109.47072 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46820 * 304.99604 * 4 3 2 6 6 C 1.52995 * 109.47141 * 64.99957 * 4 3 2 7 7 C 1.53001 * 109.46963 * 184.99919 * 4 3 2 8 8 C 1.50706 * 109.47079 * 174.99847 * 7 4 3 9 9 O 1.21284 * 119.99687 * 0.02562 * 8 7 4 10 10 N 1.34771 * 120.00221 * 179.97438 * 8 7 4 11 11 C 1.46498 * 120.00175 * 179.97438 * 10 8 7 12 12 C 1.53042 * 109.46279 * 275.03077 * 11 10 8 13 13 C 1.53194 * 109.31097 * 178.59640 * 12 11 10 14 14 N 1.46926 * 108.76489 * 54.66207 * 13 12 11 15 15 C 1.36941 * 120.63186 * 126.35566 * 14 13 12 16 16 H 1.07995 * 119.99902 * 331.86454 * 15 14 13 17 17 C 1.38809 * 119.99420 * 151.85857 * 15 14 13 18 18 N 1.31620 * 120.00779 * 343.06867 * 17 15 14 19 19 Si 1.86807 * 119.99668 * 163.06714 * 17 15 14 20 20 H 1.48497 * 109.46780 * 89.99937 * 19 17 15 21 21 H 1.48496 * 109.47077 * 210.00015 * 19 17 15 22 22 H 1.48496 * 109.47166 * 330.00369 * 19 17 15 23 23 C 1.46930 * 118.73393 * 306.37854 * 14 13 12 24 24 C 1.53039 * 109.46240 * 154.97804 * 11 10 8 25 25 H 1.09002 * 109.47229 * 300.00288 * 1 2 3 26 26 H 1.09002 * 109.47345 * 59.99996 * 1 2 3 27 27 H 1.08998 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46999 * 239.99871 * 2 1 3 29 29 H 1.09000 * 109.46986 * 119.99607 * 2 1 3 30 30 H 1.09004 * 109.47822 * 59.99943 * 3 2 1 31 31 H 1.09002 * 109.47391 * 299.99497 * 3 2 1 32 32 H 1.08996 * 109.47551 * 60.00095 * 6 4 3 33 33 H 1.09007 * 109.47153 * 180.02562 * 6 4 3 34 34 H 1.09003 * 109.47048 * 299.99637 * 6 4 3 35 35 H 1.09004 * 109.47273 * 294.99210 * 7 4 3 36 36 H 1.08994 * 109.47642 * 54.99908 * 7 4 3 37 37 H 0.96997 * 120.00099 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.45846 * 35.00448 * 11 10 8 39 39 H 1.08992 * 109.49885 * 298.56450 * 12 11 10 40 40 H 1.09006 * 109.49294 * 58.66060 * 12 11 10 41 41 H 1.08999 * 109.60295 * 294.86630 * 13 12 11 42 42 H 1.09005 * 109.69777 * 174.50390 * 13 12 11 43 43 H 0.96998 * 120.00378 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.58349 * 293.82199 * 23 14 13 45 45 H 1.09006 * 109.69758 * 173.46532 * 23 14 13 46 46 H 1.09002 * 109.49278 * 301.33846 * 24 11 10 47 47 H 1.08996 * 109.49854 * 61.43471 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9329 0.8532 0.8427 6 6 4.0805 0.8327 -1.3063 7 6 4.0799 2.8795 0.1263 8 6 5.5818 2.8706 0.2505 9 8 6.1849 1.8184 0.2391 10 7 6.2548 4.0318 0.3733 11 6 7.7147 4.0230 0.4946 12 6 8.1034 3.8116 1.9596 13 6 9.6302 3.7680 2.0775 14 7 10.1857 4.9881 1.4761 15 6 11.0427 5.7874 2.1846 16 1 10.9812 5.8232 3.2622 17 6 11.9904 6.5513 1.5176 18 7 12.2984 6.2746 0.2683 19 14 12.8290 7.9725 2.3933 20 1 14.0592 7.4830 3.0657 21 1 13.1888 9.0202 1.4043 22 1 11.9055 8.5441 3.4060 23 6 9.8038 5.3345 0.1002 24 6 8.2751 5.3601 0.0045 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7176 1.4219 -2.1484 33 1 5.1706 0.8322 -1.3057 34 1 3.7173 -0.1912 -1.3959 35 1 3.7920 3.4460 -0.7593 36 1 3.6450 3.3433 1.0116 37 1 5.7725 4.8733 0.3820 38 1 8.1245 3.2140 -0.1102 39 1 7.7152 4.6334 2.5612 40 1 7.6842 2.8703 2.3150 41 1 10.0128 2.8940 1.5505 42 1 9.9163 3.7156 3.1280 43 1 12.9604 6.8087 -0.1979 44 1 10.2006 4.5881 -0.5879 45 1 10.2025 6.3162 -0.1556 46 1 7.9782 5.5211 -1.0318 47 1 7.8853 6.1672 0.6247 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609328237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:43 Heat of formation + Delta-G solvation = -70.386883 kcal Electronic energy + Delta-G solvation = -22658.525454 eV Core-core repulsion = 19453.639135 eV Total energy + Delta-G solvation = -3204.886319 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.06014 -39.15472 -37.56351 -35.93403 -33.97261 -33.49043 -31.85129 -31.27201 -28.83283 -27.43978 -26.72327 -24.07235 -23.79350 -22.72212 -21.35648 -21.04875 -20.55752 -18.85756 -17.78622 -17.18108 -16.70647 -16.54582 -16.10250 -15.64660 -15.37817 -15.14958 -14.93163 -14.76358 -14.54702 -14.21141 -14.09444 -14.04838 -13.22333 -13.16554 -13.02211 -12.84402 -12.63581 -12.57624 -12.51104 -12.34130 -12.19363 -12.03199 -11.88624 -11.77839 -11.62296 -11.54197 -11.45737 -11.34602 -11.24087 -10.58189 -10.56708 -9.92316 -8.72147 -7.89002 -5.35033 1.47780 1.48706 1.59066 1.77039 2.29822 2.51146 3.26939 3.63458 3.79141 3.83717 3.92230 4.00941 4.05578 4.29596 4.31892 4.33305 4.44651 4.47302 4.61723 4.63566 4.74817 4.77942 4.81090 4.83841 4.85783 4.96338 5.00971 5.03546 5.04404 5.09278 5.14663 5.22538 5.27907 5.28928 5.34447 5.45519 5.46671 5.55621 5.60527 5.63164 5.67235 5.69667 6.37585 6.70874 7.13012 7.41227 7.82383 8.35637 9.18165 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.052938 B = 0.002737 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.790069 B =10228.959035 C =10274.064465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.107 4.107 4 C -0.074 4.074 5 H 0.055 0.945 6 C -0.151 4.151 7 C -0.129 4.129 8 C 0.504 3.496 9 O -0.583 6.583 10 N -0.716 5.716 11 C 0.162 3.838 12 C -0.122 4.122 13 C 0.144 3.856 14 N -0.609 5.609 15 C -0.264 4.264 16 H 0.067 0.933 17 C -0.051 4.051 18 N -0.936 5.936 19 Si 0.970 3.030 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.268 1.268 23 C 0.178 3.822 24 C -0.128 4.128 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.413 0.587 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.005 0.995 42 H 0.057 0.943 43 H 0.251 0.749 44 H -0.008 1.008 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.069 -5.452 -1.528 24.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.145 4.145 4 C -0.093 4.093 5 H 0.073 0.927 6 C -0.209 4.209 7 C -0.168 4.168 8 C 0.292 3.708 9 O -0.463 6.463 10 N -0.367 5.367 11 C 0.057 3.943 12 C -0.162 4.162 13 C 0.018 3.982 14 N -0.333 5.333 15 C -0.394 4.394 16 H 0.085 0.915 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.798 3.202 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.193 1.193 23 C 0.052 3.948 24 C -0.167 4.167 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.250 0.750 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.022 0.978 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.010 0.990 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.534 -6.115 -1.629 24.370 hybrid contribution 1.084 0.778 0.215 1.352 sum -22.450 -5.338 -1.413 23.119 Atomic orbital electron populations 1.21763 0.95136 1.01777 1.02109 1.21586 0.96331 0.97012 1.01745 1.21622 0.92778 0.97119 1.02938 1.20866 0.95846 0.94244 0.98362 0.92665 1.21945 1.01060 1.00832 0.97027 1.21818 0.88890 0.99856 1.06261 1.21479 0.91660 0.83022 0.74611 1.90664 1.71616 1.32419 1.51563 1.46142 1.06946 1.09606 1.74032 1.20580 0.80103 0.97748 0.95901 1.22148 0.96558 1.00968 0.96539 1.20969 0.92295 0.88005 0.96965 1.44354 1.52213 1.23674 1.13053 1.19510 1.09470 1.19132 0.91297 0.91496 1.25849 0.97759 1.03517 0.97522 1.70187 1.34652 1.40710 1.12656 0.85241 0.78304 0.79040 0.77622 1.21347 1.21698 1.19309 1.20566 0.90522 0.99117 0.84626 1.22241 0.97374 0.96015 1.01104 0.92452 0.92321 0.92756 0.92173 0.92817 0.90962 0.90828 0.92221 0.93911 0.92513 0.86652 0.86581 0.75023 0.92891 0.91506 0.92378 0.97750 0.92455 0.93986 0.98984 0.91849 0.90586 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.91 16 2 C -0.13 -1.72 5.69 30.59 0.17 -1.55 16 3 C -0.11 -1.35 4.68 30.59 0.14 -1.21 16 4 C -0.07 -1.33 2.04 -10.79 -0.02 -1.36 16 5 H 0.05 1.25 7.96 -2.39 -0.02 1.23 16 6 C -0.15 -3.13 8.69 71.98 0.63 -2.51 16 7 C -0.13 -2.08 5.17 29.85 0.15 -1.93 16 8 C 0.50 13.19 7.51 87.66 0.66 13.85 16 9 O -0.58 -20.73 13.63 -3.04 -0.04 -20.77 16 10 N -0.72 -18.09 5.08 -442.41 -2.25 -20.34 16 11 C 0.16 5.52 2.42 45.02 0.11 5.63 16 12 C -0.12 -4.41 5.65 30.67 0.17 -4.24 16 13 C 0.14 6.36 6.52 86.36 0.56 6.92 16 14 N -0.61 -31.19 2.99 -699.09 -2.09 -33.28 16 15 C -0.26 -14.62 9.58 84.03 0.81 -13.81 16 16 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 17 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 18 N -0.94 -55.56 11.19 21.65 0.24 -55.32 16 19 Si 0.97 44.62 29.59 68.60 2.03 46.65 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 23 C 0.18 8.60 5.30 86.36 0.46 9.06 16 24 C -0.13 -4.56 5.55 30.67 0.17 -4.39 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.85 6.57 -2.39 -0.02 0.83 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.04 1.18 5.95 -2.38 -0.01 1.17 16 34 H 0.06 1.09 6.57 -2.39 -0.02 1.07 16 35 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.41 7.56 8.60 -92.71 -0.80 6.76 16 38 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.06 2.46 7.93 -2.38 -0.02 2.44 16 43 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 44 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 45 H 0.06 3.41 6.06 -2.38 -0.01 3.40 16 46 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -68.48 362.96 3.16 -65.32 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.12 Total: 16.62 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 5.14 Total: 1.12 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -4.10 Total: -108.94 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.04 Total: -20.77 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -68.48 3.16 -65.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609328237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.068 kcal (2) G-P(sol) polarization free energy of solvation -68.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds