Wall clock time and date at job start Tue Mar 31 2020 06:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47020 * 2 1 4 4 C 1.53006 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.09009 * 109.46407 * 55.00099 * 4 3 2 6 6 C 1.52992 * 109.47119 * 295.00184 * 4 3 2 7 7 C 1.52993 * 109.47192 * 174.99748 * 4 3 2 8 8 C 1.50703 * 109.47366 * 185.00082 * 7 4 3 9 9 O 1.21279 * 119.99719 * 0.02562 * 8 7 4 10 10 N 1.34772 * 120.00233 * 179.97438 * 8 7 4 11 11 C 1.46501 * 119.99904 * 179.97438 * 10 8 7 12 12 C 1.53039 * 109.46080 * 275.03064 * 11 10 8 13 13 C 1.53190 * 109.31195 * 178.59983 * 12 11 10 14 14 N 1.46934 * 108.76356 * 54.65711 * 13 12 11 15 15 C 1.36942 * 120.62758 * 126.35920 * 14 13 12 16 16 H 1.07992 * 120.00361 * 331.86335 * 15 14 13 17 17 C 1.38817 * 119.99509 * 151.86192 * 15 14 13 18 18 N 1.31622 * 119.99831 * 343.07062 * 17 15 14 19 19 Si 1.86795 * 119.99712 * 163.07479 * 17 15 14 20 20 H 1.48496 * 109.47393 * 59.99771 * 19 17 15 21 21 H 1.48507 * 109.46989 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47199 * 299.99645 * 19 17 15 23 23 C 1.46927 * 118.73851 * 306.38457 * 14 13 12 24 24 C 1.53047 * 109.45649 * 154.97732 * 11 10 8 25 25 H 1.08994 * 109.47318 * 59.99844 * 1 2 3 26 26 H 1.09003 * 109.47297 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46836 * 300.00123 * 1 2 3 28 28 H 1.09004 * 109.47158 * 120.00073 * 2 1 3 29 29 H 1.08999 * 109.46819 * 240.00205 * 2 1 3 30 30 H 1.09004 * 109.47215 * 300.00038 * 3 2 1 31 31 H 1.08999 * 109.47157 * 60.00412 * 3 2 1 32 32 H 1.09000 * 109.47366 * 179.97438 * 6 4 3 33 33 H 1.08996 * 109.47046 * 299.99830 * 6 4 3 34 34 H 1.09005 * 109.47332 * 59.99789 * 6 4 3 35 35 H 1.09007 * 109.47156 * 305.00338 * 7 4 3 36 36 H 1.09000 * 109.47536 * 65.00079 * 7 4 3 37 37 H 0.97005 * 120.00232 * 0.02562 * 10 8 7 38 38 H 1.08992 * 109.45858 * 35.00788 * 11 10 8 39 39 H 1.09003 * 109.49803 * 298.56630 * 12 11 10 40 40 H 1.09005 * 109.49651 * 58.66459 * 12 11 10 41 41 H 1.08994 * 109.60186 * 294.87144 * 13 12 11 42 42 H 1.08996 * 109.70451 * 174.50528 * 13 12 11 43 43 H 0.97003 * 119.99696 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.58779 * 293.81949 * 23 14 13 45 45 H 1.08998 * 109.70175 * 173.46365 * 23 14 13 46 46 H 1.08997 * 109.49797 * 301.33717 * 24 11 10 47 47 H 1.09004 * 109.49608 * 61.40708 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8529 -0.8410 6 6 4.0794 0.8331 1.3082 7 6 4.0800 2.8795 -0.1251 8 6 5.5820 2.8705 -0.2480 9 8 6.1851 1.8183 -0.2367 10 7 6.2550 4.0316 -0.3716 11 6 7.7151 4.0229 -0.4905 12 6 8.3401 3.9780 0.9057 13 6 9.8659 3.9336 0.7765 14 7 10.3041 5.0709 -0.0442 15 6 11.2578 5.9382 0.4179 16 1 11.3730 6.0986 1.4796 17 6 12.0765 6.6113 -0.4787 18 7 12.1784 6.1894 -1.7213 19 14 13.0336 8.1155 0.0785 20 1 13.9481 7.7382 1.1859 21 1 13.8270 8.6467 -1.0589 22 1 12.0869 9.1573 0.5516 23 6 9.6990 5.2602 -1.3696 24 6 8.1751 5.2893 -1.2164 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 5.1694 0.8327 1.3085 33 1 3.7158 1.4226 2.1498 34 1 3.7161 -0.1907 1.3978 35 1 3.6457 3.3430 -1.0110 36 1 3.7913 3.4463 0.7600 37 1 5.7726 4.8732 -0.3811 38 1 8.0280 3.1458 -1.0569 39 1 8.0477 4.8673 1.4640 40 1 7.9937 3.0878 1.4309 41 1 10.1655 3.0011 0.2983 42 1 10.3205 3.9998 1.7650 43 1 12.7508 6.6595 -2.3477 44 1 9.9849 4.4358 -2.0229 45 1 10.0412 6.2020 -1.7986 46 1 7.7112 5.3327 -2.2018 47 1 7.8838 6.1662 -0.6381 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609328240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:49 Heat of formation + Delta-G solvation = -52.524799 kcal Electronic energy + Delta-G solvation = -22672.412197 eV Core-core repulsion = 19468.300436 eV Total energy + Delta-G solvation = -3204.111761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.88181 -37.68817 -36.61631 -34.37154 -32.87656 -32.10165 -30.19448 -29.55732 -27.79228 -26.75988 -24.90037 -22.66081 -22.20352 -21.62386 -20.32302 -19.91363 -19.14682 -17.11965 -16.50122 -15.95736 -15.56951 -15.18635 -14.75654 -14.37698 -14.06672 -13.82843 -13.65361 -13.53243 -13.29807 -12.93389 -12.74475 -12.45998 -12.35899 -12.07356 -11.82924 -11.67583 -11.44700 -11.14730 -11.09046 -10.86378 -10.83746 -10.73349 -10.71462 -10.61038 -10.48046 -10.26782 -10.03189 -9.80624 -9.64158 -9.33424 -8.66072 -8.44616 -6.68033 -5.79384 -3.21644 2.85780 3.37664 3.43488 3.44131 3.45206 4.49550 4.53571 4.64783 4.68978 4.93939 4.98439 5.10872 5.30055 5.34925 5.36243 5.45678 5.49762 5.49942 5.52650 5.59171 5.62028 5.67602 5.73762 5.80334 5.89813 5.96409 5.98253 6.08076 6.10180 6.27973 6.30146 6.34904 6.46625 6.54365 6.57522 6.62053 6.80780 6.96261 7.00348 7.32104 7.60490 7.77080 7.81423 8.44758 8.48606 9.20910 9.84147 10.41423 11.29548 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.054385 B = 0.002751 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.724971 B =10175.367067 C =10307.352622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.075 4.075 5 H 0.077 0.923 6 C -0.154 4.154 7 C -0.139 4.139 8 C 0.508 3.492 9 O -0.540 6.540 10 N -0.727 5.727 11 C 0.150 3.850 12 C -0.138 4.138 13 C 0.147 3.853 14 N -0.593 5.593 15 C -0.252 4.252 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.904 5.904 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.174 3.826 24 C -0.146 4.146 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.395 0.605 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.255 0.745 44 H 0.020 0.980 45 H 0.091 0.909 46 H 0.053 0.947 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.232 -6.620 2.528 22.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.094 4.094 5 H 0.096 0.904 6 C -0.211 4.211 7 C -0.179 4.179 8 C 0.294 3.706 9 O -0.417 6.417 10 N -0.377 5.377 11 C 0.047 3.953 12 C -0.178 4.178 13 C 0.020 3.980 14 N -0.316 5.316 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.733 3.267 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.048 3.952 24 C -0.186 4.186 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.228 0.772 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.656 -7.311 2.399 22.043 hybrid contribution 0.231 1.297 0.207 1.334 sum -20.425 -6.013 2.606 21.451 Atomic orbital electron populations 1.21782 0.96130 1.01436 1.01643 1.21576 0.95465 0.97053 1.02318 1.21686 0.94872 0.96891 1.01829 1.20888 0.94212 0.94403 0.99909 0.90443 1.21991 1.03342 0.99986 0.95775 1.21779 0.92717 0.99533 1.03840 1.20651 0.89854 0.83983 0.76068 1.90660 1.70453 1.30881 1.49754 1.46402 1.08694 1.08381 1.74213 1.21015 0.77332 0.99803 0.97156 1.22359 0.98819 1.00606 0.96025 1.20873 0.90733 0.90775 0.95576 1.44084 1.44123 1.27295 1.16056 1.19148 1.09673 1.17355 0.92032 0.91709 1.25062 0.97531 1.00583 0.96538 1.70021 1.40657 1.39634 1.04482 0.86355 0.79595 0.83212 0.77517 1.20873 1.21641 1.21061 1.20733 0.85584 1.01932 0.86975 1.22528 1.01656 0.95873 0.98567 0.92877 0.92936 0.92873 0.91673 0.92034 0.92098 0.92031 0.90525 0.93568 0.92908 0.89282 0.89241 0.77220 0.90149 0.92442 0.92814 0.96224 0.92607 0.93548 0.96154 0.89073 0.92829 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.13 -0.96 5.69 -26.73 -0.15 -1.11 16 3 C -0.12 -0.90 4.68 -26.73 -0.13 -1.02 16 4 C -0.08 -0.75 2.04 -90.62 -0.18 -0.93 16 5 H 0.08 0.90 7.96 -51.92 -0.41 0.49 16 6 C -0.15 -1.67 8.69 37.15 0.32 -1.35 16 7 C -0.14 -1.35 5.17 -27.88 -0.14 -1.49 16 8 C 0.51 7.11 7.51 -10.99 -0.08 7.02 16 9 O -0.54 -9.60 13.63 5.56 0.08 -9.53 16 10 N -0.73 -10.05 5.08 -53.77 -0.27 -10.32 16 11 C 0.15 2.63 2.42 -67.89 -0.16 2.47 16 12 C -0.14 -2.55 5.65 -26.61 -0.15 -2.70 16 13 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 14 N -0.59 -14.93 2.99 -172.32 -0.52 -15.44 16 15 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 16 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 17 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 18 N -0.90 -26.16 11.19 55.49 0.62 -25.54 16 19 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 24 C -0.15 -2.69 5.55 -26.61 -0.15 -2.84 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.51 6.56 -51.93 -0.34 0.16 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 1.06 5.95 -51.93 -0.31 0.75 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.52 6.56 -51.93 -0.34 0.18 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.39 4.35 8.60 -40.82 -0.35 4.00 16 38 H 0.08 1.60 7.57 -51.93 -0.39 1.20 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 362.97 15.07 5.47 5.47 Total: -1.00 -30.63 362.97 -9.15 -39.78 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.77 Total: 1.42 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -0.73 Total: -2.41 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.17 Total: -51.30 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.63 -9.15 -39.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609328240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.744 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds