Wall clock time and date at job start Tue Mar 31 2020 05:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47211 * 2 1 4 4 C 1.53005 * 109.47261 * 240.00307 * 2 1 3 5 5 C 1.50698 * 109.47189 * 59.99660 * 4 2 1 6 6 H 1.08004 * 120.00034 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00018 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99869 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00089 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47127 * 89.99893 * 9 7 5 11 11 H 1.48502 * 109.46916 * 209.99582 * 9 7 5 12 12 H 1.48501 * 109.47053 * 329.99835 * 9 7 5 13 13 C 1.53000 * 109.47173 * 120.00059 * 2 1 3 14 14 N 1.46895 * 109.47239 * 300.00186 * 13 2 1 15 15 C 1.46896 * 111.00306 * 180.02562 * 14 13 2 16 16 C 1.50696 * 109.47452 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00109 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00137 * 179.97438 * 16 15 14 19 19 C 1.46506 * 119.99873 * 179.97438 * 18 16 15 20 20 C 1.54268 * 110.03351 * 272.90833 * 19 18 16 21 21 C 1.54960 * 104.16081 * 217.13577 * 20 19 18 22 22 C 1.54894 * 102.77798 * 37.89146 * 21 20 19 23 23 C 1.53876 * 110.02735 * 155.69309 * 19 18 16 24 24 H 1.08991 * 109.47303 * 299.99783 * 1 2 3 25 25 H 1.09002 * 109.47457 * 60.00298 * 1 2 3 26 26 H 1.09004 * 109.46852 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47399 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47370 * 300.00370 * 3 2 1 29 29 H 1.09001 * 109.46811 * 59.99907 * 3 2 1 30 30 H 1.09002 * 109.47158 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.46792 * 299.99864 * 4 2 1 32 32 H 0.97003 * 120.00178 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47089 * 180.02562 * 13 2 1 34 34 H 1.09004 * 109.46929 * 60.00417 * 13 2 1 35 35 H 1.00907 * 111.00152 * 303.95599 * 14 13 2 36 36 H 1.09004 * 109.47072 * 59.99853 * 15 14 13 37 37 H 1.09000 * 109.47017 * 299.99890 * 15 14 13 38 38 H 0.96995 * 120.00018 * 0.27749 * 18 16 15 39 39 H 1.08996 * 110.01518 * 34.30257 * 19 18 16 40 40 H 1.09004 * 110.48628 * 335.78894 * 20 19 18 41 41 H 1.09007 * 110.48293 * 98.42755 * 20 19 18 42 42 H 1.08999 * 110.72063 * 279.58023 * 21 20 19 43 43 H 1.09000 * 110.91947 * 156.29644 * 21 20 19 44 44 H 1.09000 * 110.48739 * 203.40857 * 22 21 20 45 45 H 1.09000 * 110.59948 * 80.80998 * 22 21 20 46 46 H 1.08997 * 110.03107 * 238.56635 * 23 19 18 47 47 H 1.08992 * 110.03504 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6257 -1.5519 -3.8527 9 14 1.2482 0.3989 -5.2572 10 1 2.2270 1.4399 -5.6614 11 1 1.0826 -0.5802 -6.3614 12 1 -0.0595 1.0373 -4.9613 13 6 2.0400 -0.7213 1.2492 14 7 1.5503 -0.0289 2.4486 15 6 2.0218 -0.6946 3.6703 16 6 1.5012 0.0427 4.8771 17 8 0.8062 1.0262 4.7337 18 7 1.8079 -0.3909 6.1158 19 6 1.3022 0.3262 7.2890 20 6 2.2683 1.4677 7.6676 21 6 2.2483 1.4832 9.2170 22 6 2.1756 -0.0224 9.5736 23 6 1.2429 -0.6209 8.5004 24 1 -0.3633 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7208 -1.2495 31 1 1.6767 -1.7489 -1.2493 32 1 2.8601 -1.8834 -4.7337 33 1 3.1300 -0.7209 1.2494 34 1 1.6767 -1.7490 1.2492 35 1 1.8197 0.9436 2.4402 36 1 3.1117 -0.6940 3.6868 37 1 1.6587 -1.7222 3.6873 38 1 2.3671 -1.1752 6.2305 39 1 0.3111 0.7292 7.0813 40 1 3.2726 1.2549 7.3012 41 1 1.9100 2.4179 7.2712 42 1 1.3686 2.0104 9.5861 43 1 3.1597 1.9305 9.6135 44 1 1.7501 -0.1588 10.5678 45 1 3.1642 -0.4781 9.5168 46 1 0.2232 -0.6766 8.8811 47 1 1.5908 -1.6137 8.2155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610270967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:46 Heat of formation + Delta-G solvation = -65.607642 kcal Electronic energy + Delta-G solvation = -22279.327089 eV Core-core repulsion = 19074.648013 eV Total energy + Delta-G solvation = -3204.679076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.07971 -38.13169 -37.28351 -34.06140 -33.79845 -32.10557 -29.11012 -28.74403 -27.12394 -26.40057 -26.23762 -24.32029 -22.16540 -21.15155 -20.69221 -20.52782 -18.12904 -16.98675 -16.65072 -16.17625 -15.82130 -15.59029 -15.17333 -14.61208 -14.06136 -14.02816 -13.86689 -13.74052 -13.21855 -12.90723 -12.55125 -12.31826 -12.06902 -11.95142 -11.82067 -11.66543 -11.55594 -11.43536 -11.10970 -11.01994 -10.94640 -10.82262 -10.74009 -10.44020 -10.25114 -10.12220 -9.78926 -9.63805 -9.20592 -8.98155 -8.79784 -8.28711 -8.09181 -5.93496 -3.93125 2.63320 2.98098 3.35896 3.42315 3.46043 4.15466 4.25486 4.45831 4.51114 4.59930 4.77998 5.02008 5.10405 5.16041 5.17825 5.25518 5.30475 5.34772 5.41663 5.42468 5.51938 5.66967 5.71366 5.79241 5.82354 5.86869 5.94683 6.03652 6.25187 6.36959 6.37573 6.55998 6.74808 6.83680 6.89890 7.15285 7.25720 7.32887 7.35521 7.45312 7.67949 7.73701 7.88719 8.07081 8.20818 8.52012 9.12161 9.69496 11.18211 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.052682 B = 0.002494 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.358562 B =11223.404680 C =11375.116908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.057 4.057 3 C -0.131 4.131 4 C 0.034 3.966 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.053 3.947 8 N -0.899 5.899 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.070 3.930 14 N -0.671 5.671 15 C 0.039 3.961 16 C 0.512 3.488 17 O -0.522 6.522 18 N -0.732 5.732 19 C 0.141 3.859 20 C -0.135 4.135 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.131 4.131 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.013 0.987 31 H 0.015 0.985 32 H 0.258 0.742 33 H 0.024 0.976 34 H 0.067 0.933 35 H 0.348 0.652 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.101 1.080 26.417 26.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.058 4.058 3 C -0.188 4.188 4 C -0.004 4.004 5 C -0.543 4.543 6 H 0.077 0.923 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.716 3.284 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.058 4.058 14 N -0.304 5.304 15 C -0.094 4.094 16 C 0.299 3.701 17 O -0.397 6.397 18 N -0.386 5.386 19 C 0.036 3.964 20 C -0.174 4.174 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.170 4.170 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.169 0.831 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.041 1.366 26.157 26.192 hybrid contribution 1.034 0.136 -0.882 1.366 sum 1.075 1.502 25.275 25.342 Atomic orbital electron populations 1.21610 0.94899 1.00574 1.00395 1.20619 0.95989 0.95021 0.94129 1.21785 0.99601 0.96771 1.00648 1.19133 0.95866 0.95212 0.90179 1.21246 1.30645 1.11857 0.90584 0.92254 1.25019 0.95468 0.95133 0.99062 1.69969 1.37467 1.23188 1.23237 0.86655 0.79264 0.79389 0.83062 1.20851 1.21411 1.19895 1.22165 0.96311 0.98174 0.89143 1.60300 1.63550 1.06866 0.99716 1.21816 0.98224 0.99530 0.89783 1.20818 0.80154 0.84882 0.84293 1.90707 1.36737 1.26183 1.86037 1.46216 1.54418 1.32457 1.05515 1.21602 0.98534 0.91960 0.84328 1.22814 0.99889 0.99116 0.95592 1.22492 1.02019 0.96303 0.95463 1.22359 0.99631 0.95791 0.98417 1.22441 1.00806 0.98815 0.94895 0.93634 0.92675 0.94215 0.94143 0.91653 0.94590 0.96910 0.96638 0.93215 0.95743 0.91411 0.83112 0.92810 0.88323 0.76767 0.89163 0.91223 0.91037 0.91275 0.91385 0.91450 0.91496 0.90747 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.06 37.16 0.30 -2.09 16 2 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 3 C -0.13 -2.54 7.89 37.16 0.29 -2.25 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.50 -13.98 7.65 -34.44 -0.26 -14.24 16 6 H 0.06 1.61 5.68 -52.48 -0.30 1.31 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.07 1.22 4.65 -3.83 -0.02 1.20 16 14 N -0.67 -10.46 5.34 -115.06 -0.61 -11.08 16 15 C 0.04 0.47 6.17 -4.98 -0.03 0.44 16 16 C 0.51 6.42 7.86 -10.99 -0.09 6.33 16 17 O -0.52 -8.75 15.87 5.55 0.09 -8.66 16 18 N -0.73 -6.47 5.04 -52.72 -0.27 -6.74 16 19 C 0.14 1.20 3.23 -66.81 -0.22 0.98 16 20 C -0.14 -1.11 6.54 -25.03 -0.16 -1.27 16 21 C -0.12 -0.77 6.91 -24.70 -0.17 -0.94 16 22 C -0.12 -0.66 6.83 -25.07 -0.17 -0.83 16 23 C -0.13 -0.79 6.57 -25.61 -0.17 -0.96 16 24 H 0.04 0.87 7.60 -51.93 -0.39 0.48 16 25 H 0.05 1.19 6.62 -51.93 -0.34 0.85 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.36 6.62 -51.93 -0.34 1.02 16 29 H 0.04 0.62 6.57 -51.93 -0.34 0.28 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.35 5.64 6.47 -39.29 -0.25 5.38 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.40 2.41 8.31 -40.82 -0.34 2.07 16 39 H 0.09 0.97 7.59 -51.93 -0.39 0.57 16 40 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 41 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.37 7.61 -51.93 -0.40 -0.03 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -32.04 366.27 -9.13 -41.17 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -8.58 Total: 1.93 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -1.00 Total: -12.71 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.14 Total: -44.08 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.04 -9.13 -41.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610270967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.435 kcal (2) G-P(sol) polarization free energy of solvation -32.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds