Wall clock time and date at job start Tue Mar 31 2020 05:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 110.99779 * 2 1 4 4 C 1.50691 * 109.47335 * 293.95521 * 3 2 1 5 5 O 1.21280 * 120.00456 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00245 * 180.27894 * 4 3 2 7 7 C 1.47023 * 125.64725 * 359.41628 * 6 4 3 8 8 C 1.54311 * 107.27843 * 180.97139 * 7 6 4 9 9 C 1.55155 * 102.86242 * 22.52220 * 8 7 6 10 10 C 1.47422 * 125.65136 * 179.72148 * 6 4 3 11 11 C 1.46904 * 111.00066 * 123.95527 * 2 1 3 12 12 C 1.52997 * 109.47029 * 85.40708 * 11 2 1 13 13 C 1.53005 * 109.47111 * 300.29464 * 12 11 2 14 14 C 1.53005 * 109.47181 * 60.29176 * 12 11 2 15 15 C 1.52993 * 109.47356 * 180.29247 * 12 11 2 16 16 C 1.50703 * 109.47592 * 179.97438 * 15 12 11 17 17 H 1.07993 * 119.99743 * 0.02562 * 16 15 12 18 18 C 1.37873 * 119.99834 * 179.97438 * 16 15 12 19 19 N 1.31513 * 120.00461 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99605 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47353 * 90.00268 * 20 18 16 22 22 H 1.48507 * 109.47433 * 210.00058 * 20 18 16 23 23 H 1.48505 * 109.47533 * 330.00060 * 20 18 16 24 24 H 1.09002 * 109.47308 * 67.81266 * 1 2 3 25 25 H 1.09007 * 109.47351 * 187.81243 * 1 2 3 26 26 H 1.09003 * 109.47465 * 307.80948 * 1 2 3 27 27 H 1.09009 * 109.46960 * 173.95277 * 3 2 1 28 28 H 1.08998 * 109.47428 * 53.96058 * 3 2 1 29 29 H 1.09008 * 109.87978 * 300.51622 * 7 6 4 30 30 H 1.09001 * 109.88281 * 61.67505 * 7 6 4 31 31 H 1.09006 * 110.92040 * 264.10909 * 8 7 6 32 32 H 1.08999 * 110.59530 * 140.78541 * 8 7 6 33 33 H 1.09003 * 111.00207 * 206.22678 * 9 8 7 34 34 H 1.09003 * 111.00516 * 82.38286 * 9 8 7 35 35 H 1.08991 * 110.36970 * 274.67241 * 10 6 4 36 36 H 1.09003 * 110.36484 * 36.89015 * 10 6 4 37 37 H 1.08997 * 109.47114 * 205.40868 * 11 2 1 38 38 H 1.08999 * 109.46879 * 325.40720 * 11 2 1 39 39 H 1.08990 * 109.47356 * 68.68749 * 13 12 11 40 40 H 1.09008 * 109.46812 * 188.68954 * 13 12 11 41 41 H 1.09001 * 109.46791 * 308.68679 * 13 12 11 42 42 H 1.08997 * 109.46547 * 59.99900 * 14 12 11 43 43 H 1.09001 * 109.47181 * 180.02562 * 14 12 11 44 44 H 1.08996 * 109.47011 * 300.00010 * 14 12 11 45 45 H 1.09005 * 109.47156 * 300.00239 * 15 12 11 46 46 H 1.09004 * 109.47155 * 59.99830 * 15 12 11 47 47 H 0.97001 * 120.00179 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 -1.2983 5 8 1.0054 1.4454 -2.1410 6 7 2.0231 3.3182 -1.5257 7 6 2.7843 4.1622 -0.5931 8 6 2.9729 5.5368 -1.2685 9 6 1.8153 5.5761 -2.3009 10 6 1.7470 4.0945 -2.7481 11 6 1.9955 -0.7660 1.1376 12 6 2.0704 -2.2477 0.7637 13 6 0.6723 -2.7541 0.4033 14 6 3.0019 -2.4243 -0.4371 15 6 2.6118 -3.0465 1.9509 16 6 2.6850 -4.5061 1.5829 17 1 2.3767 -4.8314 0.6004 18 6 3.1467 -5.4260 2.5003 19 7 3.5227 -5.0299 3.6967 20 14 3.2381 -7.2350 2.0439 21 1 4.5677 -7.5296 1.4515 22 1 3.0443 -8.0632 3.2613 23 1 2.1752 -7.5508 1.0561 24 1 -0.3634 0.3881 -0.9516 25 1 -0.3634 -1.0182 0.1397 26 1 -0.3634 0.6300 0.8119 27 1 3.0797 1.3444 0.1083 28 1 1.5611 1.9273 0.8310 29 1 2.2305 4.2778 0.3387 30 1 3.7571 3.7120 -0.3951 31 1 3.9390 5.5949 -1.7700 32 1 2.8668 6.3401 -0.5394 33 1 2.0620 6.2267 -3.1399 34 1 0.8821 5.8855 -1.8300 35 1 2.5041 3.8917 -3.5055 36 1 0.7546 3.8577 -3.1318 37 1 2.9922 -0.4039 1.3893 38 1 1.3359 -0.6408 1.9963 39 1 0.3497 -2.2960 -0.5315 40 1 0.6970 -3.8377 0.2875 41 1 -0.0259 -2.4895 1.1975 42 1 3.9979 -2.0635 -0.1804 43 1 3.0550 -3.4798 -0.7038 44 1 2.6162 -1.8552 -1.2829 45 1 3.6079 -2.6858 2.2077 46 1 1.9482 -2.9208 2.8065 47 1 3.8472 -5.6771 4.3422 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611253254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:42 Heat of formation + Delta-G solvation = -29.885255 kcal Electronic energy + Delta-G solvation = -23122.469532 eV Core-core repulsion = 19919.339495 eV Total energy + Delta-G solvation = -3203.130037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.19635 -38.31581 -37.18895 -34.65201 -32.22253 -31.92903 -29.55477 -28.22015 -27.28179 -26.64806 -25.85426 -23.91886 -23.12248 -21.73614 -21.20669 -19.29685 -18.00712 -16.98928 -16.85028 -16.13284 -15.59222 -15.36182 -14.84061 -14.47267 -14.24645 -13.92333 -13.63109 -13.43902 -13.04243 -12.87936 -12.73354 -12.45626 -12.36863 -11.99593 -11.93725 -11.72679 -11.58804 -11.50372 -11.14425 -11.10773 -10.82272 -10.69840 -10.55442 -10.36165 -10.29318 -9.97762 -9.68490 -9.51620 -8.89184 -8.81957 -8.75598 -8.26982 -7.89806 -5.91967 -3.91274 2.65528 2.77530 3.37011 3.43272 3.46949 4.08268 4.20459 4.31362 4.50626 4.54307 4.74743 4.88628 5.00600 5.21346 5.23237 5.33609 5.35311 5.44017 5.46105 5.51261 5.58264 5.62462 5.71564 5.75965 5.83241 6.00454 6.11083 6.12540 6.31411 6.39047 6.43179 6.66986 6.81500 6.90209 6.95139 7.20388 7.29854 7.33226 7.38781 7.45849 7.55316 7.76249 7.91569 8.09118 8.21107 8.54624 9.14167 9.71217 11.19823 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038401 B = 0.003118 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.971658 B = 8978.900329 C = 9202.860239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 N -0.517 5.517 3 C 0.042 3.958 4 C 0.531 3.469 5 O -0.517 6.517 6 N -0.628 5.628 7 C 0.098 3.902 8 C -0.132 4.132 9 C -0.134 4.134 10 C 0.106 3.894 11 C 0.065 3.935 12 C -0.050 4.050 13 C -0.133 4.133 14 C -0.116 4.116 15 C 0.033 3.967 16 C -0.504 4.504 17 H 0.060 0.940 18 C 0.054 3.946 19 N -0.899 5.899 20 Si 0.887 3.113 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.274 1.274 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.011 0.989 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.035 0.965 43 H 0.054 0.946 44 H 0.046 0.954 45 H 0.013 0.987 46 H 0.012 0.988 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.376 22.725 -8.443 24.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 N -0.241 5.241 3 C -0.090 4.090 4 C 0.320 3.680 5 O -0.391 6.391 6 N -0.366 5.366 7 C -0.025 4.025 8 C -0.170 4.170 9 C -0.172 4.172 10 C -0.017 4.017 11 C -0.062 4.062 12 C -0.051 4.051 13 C -0.190 4.190 14 C -0.174 4.174 15 C -0.004 4.004 16 C -0.542 4.542 17 H 0.078 0.922 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.715 3.285 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.199 1.199 24 H 0.096 0.904 25 H 0.111 0.889 26 H 0.029 0.971 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.032 0.968 46 H 0.030 0.970 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.530 21.984 -9.144 23.944 hybrid contribution -0.009 -0.490 0.799 0.938 sum -2.538 21.494 -8.345 23.197 Atomic orbital electron populations 1.23056 0.87170 1.03635 1.00840 1.61675 1.08358 1.09485 1.44537 1.22018 1.01937 0.91364 0.93647 1.20456 0.78810 0.79362 0.89401 1.90676 1.38966 1.62711 1.46733 1.48598 1.56756 1.12752 1.18480 1.22045 0.96339 0.90984 0.93133 1.22634 0.99373 0.96207 0.98758 1.22794 0.99137 0.95873 0.99434 1.22169 1.01900 0.89883 0.87714 1.22397 0.98581 0.95504 0.89677 1.20546 0.95543 0.91072 0.97927 1.21996 0.96076 1.01920 0.98999 1.21599 0.97648 1.01027 0.97095 1.19134 0.95642 0.94138 0.91513 1.21255 1.41730 0.92155 0.99068 0.92214 1.25008 0.95860 0.98651 0.95115 1.69967 1.44644 1.34068 1.05264 0.86671 0.78359 0.85645 0.77786 1.20818 1.21443 1.19914 0.90405 0.88884 0.97056 0.88155 0.92613 0.91383 0.91151 0.90382 0.89968 0.89826 0.90641 0.91581 0.90499 0.91824 0.94652 0.93336 0.91841 0.94436 0.94617 0.92746 0.93520 0.96821 0.96952 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 8.40 60.06 0.50 0.51 16 2 N -0.52 -8.43 3.51 -244.37 -0.86 -9.29 16 3 C 0.04 0.55 4.57 -4.98 -0.02 0.53 16 4 C 0.53 7.46 7.61 -10.99 -0.08 7.38 16 5 O -0.52 -9.20 14.57 5.56 0.08 -9.12 16 6 N -0.63 -6.69 3.33 -170.53 -0.57 -7.26 16 7 C 0.10 0.71 6.48 -3.07 -0.02 0.69 16 8 C -0.13 -0.67 6.95 -24.90 -0.17 -0.85 16 9 C -0.13 -0.76 7.08 -24.58 -0.17 -0.94 16 10 C 0.11 0.94 6.91 -2.53 -0.02 0.93 16 11 C 0.07 1.16 4.24 -3.82 -0.02 1.15 16 12 C -0.05 -1.05 0.60 -154.51 -0.09 -1.14 16 13 C -0.13 -2.66 6.67 37.16 0.25 -2.41 16 14 C -0.12 -2.40 8.06 37.16 0.30 -2.10 16 15 C 0.03 0.85 4.04 -27.89 -0.11 0.74 16 16 C -0.50 -14.01 7.53 -34.44 -0.26 -14.27 16 17 H 0.06 1.63 5.72 -52.49 -0.30 1.33 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 20 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 24 H 0.08 1.29 6.06 -51.93 -0.31 0.98 16 25 H 0.09 1.51 3.89 -51.93 -0.20 1.31 16 26 H 0.01 0.16 8.03 -51.93 -0.42 -0.26 16 27 H 0.10 1.22 7.79 -51.92 -0.40 0.81 16 28 H 0.06 0.65 8.04 -51.93 -0.42 0.23 16 29 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.77 8.03 -51.93 -0.42 0.36 16 37 H 0.06 1.09 7.57 -51.93 -0.39 0.70 16 38 H 0.04 0.63 7.85 -51.93 -0.41 0.22 16 39 H 0.05 0.90 6.21 -51.93 -0.32 0.58 16 40 H 0.06 1.38 6.38 -51.92 -0.33 1.04 16 41 H 0.04 0.71 7.47 -51.93 -0.39 0.32 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.05 1.19 6.62 -51.93 -0.34 0.84 16 44 H 0.05 0.92 7.61 -51.93 -0.40 0.53 16 45 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -32.67 357.16 -8.68 -41.35 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -8.42 Total: -3.27 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -0.02 Total: -8.33 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.69 Total: -42.92 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.67 -8.68 -41.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611253254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.464 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds