Wall clock time and date at job start Tue Mar 31 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47023 * 2 1 4 4 C 1.52997 * 109.46809 * 120.00329 * 2 1 3 5 5 H 1.09000 * 109.46918 * 177.58373 * 4 2 1 6 6 N 1.46900 * 109.47485 * 57.58104 * 4 2 1 7 7 C 1.46898 * 110.99972 * 84.99822 * 6 4 2 8 8 C 1.53002 * 109.47170 * 180.02562 * 7 6 4 9 9 C 1.52995 * 109.47488 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47411 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99761 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99954 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99972 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00124 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46920 * 90.00424 * 14 12 10 16 16 H 1.48498 * 109.47159 * 210.00377 * 14 12 10 17 17 H 1.48499 * 109.47479 * 330.00425 * 14 12 10 18 18 C 1.50700 * 109.47168 * 297.57810 * 4 2 1 19 19 O 1.21284 * 120.00222 * 83.22861 * 18 4 2 20 20 N 1.34778 * 119.99863 * 263.23136 * 18 4 2 21 21 C 1.47031 * 125.64444 * 174.36271 * 20 18 4 22 22 C 1.54326 * 107.39642 * 181.01600 * 21 20 18 23 23 C 1.55542 * 102.76199 * 22.24147 * 22 21 20 24 24 C 1.47419 * 125.65272 * 354.40543 * 20 18 4 25 25 H 1.08988 * 109.47203 * 299.99942 * 1 2 3 26 26 H 1.09005 * 109.46618 * 59.99924 * 1 2 3 27 27 H 1.08999 * 109.46979 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47009 * 240.00162 * 2 1 3 29 29 H 1.08999 * 109.47598 * 296.09922 * 3 2 1 30 30 H 1.09001 * 109.46917 * 56.10181 * 3 2 1 31 31 H 1.09004 * 109.46972 * 176.09794 * 3 2 1 32 32 H 1.00904 * 110.99881 * 208.95603 * 6 4 2 33 33 H 1.09002 * 109.47326 * 300.00116 * 7 6 4 34 34 H 1.08995 * 109.47269 * 60.00192 * 7 6 4 35 35 H 1.09002 * 109.46999 * 300.00204 * 8 7 6 36 36 H 1.09004 * 109.47048 * 59.99717 * 8 7 6 37 37 H 1.09002 * 109.47092 * 300.00055 * 9 8 7 38 38 H 1.09004 * 109.46811 * 59.99523 * 9 8 7 39 39 H 0.96996 * 120.00163 * 179.97438 * 13 12 10 40 40 H 1.08992 * 109.88445 * 300.51054 * 21 20 18 41 41 H 1.09003 * 109.87941 * 61.52810 * 21 20 18 42 42 H 1.09005 * 110.71857 * 140.63829 * 22 21 20 43 43 H 1.09002 * 110.72255 * 263.90421 * 22 21 20 44 44 H 1.09002 * 110.96529 * 206.40014 * 23 22 21 45 45 H 1.08998 * 111.03063 * 82.55979 * 23 22 21 46 46 H 1.09006 * 110.36502 * 274.67789 * 24 20 18 47 47 H 1.08997 * 110.36524 * 36.88609 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1291 -0.7590 1.2278 6 7 1.5032 -2.0884 1.2788 7 6 2.3404 -2.9999 0.4875 8 6 1.7505 -4.4106 0.5417 9 6 2.6228 -5.3602 -0.2819 10 6 2.0414 -6.7495 -0.2291 11 1 1.1402 -6.9366 0.3357 12 6 2.6608 -7.7820 -0.9010 13 7 2.1537 -8.9945 -0.8545 14 14 4.2201 -7.4585 -1.8773 15 1 5.4025 -7.6510 -0.9997 16 1 4.2932 -8.4033 -3.0206 17 1 4.2043 -6.0641 -2.3878 18 6 1.5872 0.0228 2.4790 19 8 0.4765 -0.1664 2.9277 20 7 2.4167 0.8987 3.0801 21 6 2.0670 1.7736 4.2088 22 6 3.3160 2.6159 4.5439 23 6 4.1256 2.5729 3.2165 24 6 3.8244 1.1388 2.7143 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.7349 1.9358 -0.9228 30 1 1.6207 1.9760 0.8530 31 1 3.1278 1.4433 0.0699 32 1 1.4059 -2.4183 2.2274 33 1 2.3713 -2.6589 -0.5473 34 1 3.3507 -3.0123 0.8963 35 1 1.7192 -4.7519 1.5764 36 1 0.7402 -4.3979 0.1326 37 1 2.6545 -5.0191 -1.3166 38 1 3.6329 -5.3727 0.1276 39 1 2.5891 -9.7208 -1.3275 40 1 1.2423 2.4288 3.9284 41 1 1.7843 1.1704 5.0716 42 1 3.0354 3.6392 4.7939 43 1 3.8816 2.1606 5.3568 44 1 5.1910 2.7051 3.4050 45 1 3.7599 3.3188 2.5109 46 1 4.4738 0.4184 3.2118 47 1 3.9509 1.0792 1.6333 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611395345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:38 Heat of formation + Delta-G solvation = -50.990105 kcal Electronic energy + Delta-G solvation = -23057.866134 eV Core-core repulsion = 19853.820922 eV Total energy + Delta-G solvation = -3204.045212 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.64393 -38.05204 -36.61402 -34.83418 -32.97133 -31.94755 -31.16138 -29.54172 -27.59764 -27.05652 -25.28243 -23.62162 -22.32921 -21.72490 -20.75104 -20.06944 -18.72148 -17.39720 -16.89802 -16.62377 -16.04421 -15.57474 -14.95817 -14.51733 -14.18442 -14.02431 -13.86075 -13.80450 -13.50321 -13.43143 -12.85066 -12.60818 -12.51659 -12.41392 -12.04158 -12.00019 -11.75513 -11.70414 -11.68272 -11.21894 -11.18561 -10.98857 -10.87590 -10.78971 -10.71484 -9.94701 -9.79152 -9.67440 -9.49883 -9.14275 -8.87865 -8.50874 -8.27003 -6.00840 -3.98513 2.48426 2.68797 3.31714 3.39080 3.42693 4.02025 4.12657 4.22932 4.45280 4.47543 4.54101 4.77647 4.82067 4.87809 4.96469 5.11907 5.18527 5.25222 5.30241 5.32853 5.38362 5.46880 5.48519 5.54295 5.62741 5.71454 5.72150 5.75489 5.86000 5.91931 6.01577 6.09370 6.16667 6.32555 6.54025 6.58375 6.65313 6.93242 7.09281 7.28667 7.38131 7.44416 7.52750 7.83390 8.04497 8.58786 9.05317 9.61589 11.12863 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023997 B = 0.003281 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.509325 B = 8532.339811 C = 8713.909032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 C -0.153 4.153 4 C 0.080 3.920 5 H 0.057 0.943 6 N -0.666 5.666 7 C 0.058 3.942 8 C -0.099 4.099 9 C -0.012 4.012 10 C -0.518 4.518 11 H 0.072 0.928 12 C 0.064 3.936 13 N -0.905 5.905 14 Si 0.881 3.119 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.266 1.266 18 C 0.531 3.469 19 O -0.518 6.518 20 N -0.622 5.622 21 C 0.106 3.894 22 C -0.132 4.132 23 C -0.133 4.133 24 C 0.091 3.909 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.346 0.654 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.016 0.984 38 H 0.008 0.992 39 H 0.262 0.738 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.552 27.893 7.158 29.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 C -0.211 4.211 4 C -0.033 4.033 5 H 0.075 0.925 6 N -0.299 5.299 7 C -0.071 4.071 8 C -0.137 4.137 9 C -0.050 4.050 10 C -0.556 4.556 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.544 5.544 14 Si 0.708 3.292 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.190 1.190 18 C 0.319 3.681 19 O -0.392 6.392 20 N -0.359 5.359 21 C -0.016 4.016 22 C -0.170 4.170 23 C -0.171 4.171 24 C -0.032 4.032 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.165 0.835 33 H 0.088 0.912 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.034 0.966 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.449 27.642 6.800 28.811 hybrid contribution 1.763 -0.101 0.087 1.768 sum 6.212 27.540 6.887 29.060 Atomic orbital electron populations 1.21732 0.93610 1.03654 1.00651 1.21022 0.97894 0.94631 0.96202 1.22018 1.00526 0.96389 1.02151 1.21606 0.97636 0.91080 0.92995 0.92549 1.60411 1.51431 0.99432 1.18617 1.22263 0.93469 0.93723 0.97626 1.21439 1.00443 0.91079 1.00742 1.19535 0.94955 0.95362 0.95111 1.21160 1.11923 0.91125 1.31424 0.90985 1.25047 0.97372 0.95006 0.96200 1.69921 1.40444 1.00410 1.43633 0.86763 0.83934 0.78434 0.80044 1.20415 1.21421 1.19027 1.20451 0.84484 0.78901 0.84240 1.90722 1.20133 1.63663 1.64670 1.48586 1.12337 1.40622 1.34371 1.21885 0.97602 0.92653 0.89497 1.22717 0.95923 1.00494 0.97854 1.22836 1.00937 0.96128 0.97167 1.22506 0.82418 0.96966 1.01337 0.92666 0.93767 0.90531 0.90016 0.92082 0.92728 0.92734 0.83492 0.91210 0.95770 0.92992 0.91701 0.96600 0.97349 0.92791 0.91565 0.91465 0.89944 0.90486 0.89720 0.90418 0.91286 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.65 37.16 0.32 -1.51 16 2 C -0.08 -0.91 2.84 -90.62 -0.26 -1.17 16 3 C -0.15 -1.40 8.04 37.16 0.30 -1.10 16 4 C 0.08 1.01 1.89 -68.87 -0.13 0.88 16 5 H 0.06 0.64 6.29 -51.93 -0.33 0.31 16 6 N -0.67 -10.06 5.25 -107.95 -0.57 -10.62 16 7 C 0.06 0.94 5.48 -3.82 -0.02 0.91 16 8 C -0.10 -2.00 5.41 -26.73 -0.14 -2.15 16 9 C -0.01 -0.28 4.04 -27.89 -0.11 -0.39 16 10 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 11 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 12 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 13 N -0.90 -28.42 13.96 55.43 0.77 -27.65 16 14 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 18 C 0.53 6.99 4.98 -10.98 -0.05 6.93 16 19 O -0.52 -8.68 15.51 5.55 0.09 -8.60 16 20 N -0.62 -6.25 2.90 -170.52 -0.49 -6.74 16 21 C 0.11 0.90 6.86 -3.06 -0.02 0.88 16 22 C -0.13 -0.69 6.98 -24.69 -0.17 -0.86 16 23 C -0.13 -0.65 7.10 -24.38 -0.17 -0.82 16 24 C 0.09 0.64 6.09 -2.54 -0.02 0.63 16 25 H 0.05 0.79 6.44 -51.94 -0.33 0.46 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 1.16 7.54 -51.93 -0.39 0.77 16 28 H 0.08 0.97 7.51 -51.93 -0.39 0.58 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.53 7.03 -51.93 -0.37 0.17 16 31 H 0.05 0.41 6.24 -51.93 -0.32 0.09 16 32 H 0.35 5.42 8.18 -39.29 -0.32 5.10 16 33 H 0.07 1.11 7.48 -51.93 -0.39 0.72 16 34 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 38 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.55 4.70 -51.93 -0.24 0.31 16 LS Contribution 359.43 15.07 5.42 5.42 Total: -1.00 -33.16 359.43 -8.87 -42.03 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.51 Total: 0.29 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -0.91 Total: -11.39 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.29 Total: -45.02 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.16 -8.87 -42.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611395345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.957 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds