Wall clock time and date at job start Tue Mar 31 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47140 * 2 1 4 4 C 1.53002 * 109.47055 * 175.07672 * 3 2 1 5 5 H 1.09004 * 109.57994 * 59.75960 * 4 3 2 6 6 C 1.53188 * 109.70618 * 299.40418 * 4 3 2 7 7 H 1.09000 * 109.50049 * 65.52083 * 6 4 3 8 8 C 1.53002 * 109.49725 * 305.45791 * 6 4 3 9 9 C 1.53041 * 109.31371 * 185.50719 * 6 4 3 10 10 C 1.53040 * 109.53758 * 61.36462 * 9 6 4 11 11 C 1.53629 * 109.23980 * 298.51511 * 10 9 6 12 12 N 1.46922 * 109.58202 * 180.02562 * 4 3 2 13 13 C 1.34774 * 120.63360 * 353.51867 * 12 4 3 14 14 O 1.21583 * 120.00017 * 5.60948 * 13 12 4 15 15 N 1.34783 * 119.99934 * 185.60973 * 13 12 4 16 16 C 1.46496 * 119.99992 * 175.00968 * 15 13 12 17 17 C 1.52995 * 109.47030 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47131 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00075 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00020 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99916 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99928 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47198 * 60.00047 * 22 20 18 24 24 H 1.48501 * 109.46934 * 299.99913 * 22 20 18 25 25 H 1.48498 * 109.47407 * 180.02562 * 22 20 18 26 26 H 1.09007 * 109.46739 * 299.99185 * 1 2 3 27 27 H 1.08998 * 109.47550 * 59.99533 * 1 2 3 28 28 H 1.09006 * 109.47057 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46739 * 240.00815 * 2 1 3 30 30 H 1.08998 * 109.47550 * 120.00467 * 2 1 3 31 31 H 1.09000 * 109.46718 * 55.08308 * 3 2 1 32 32 H 1.08993 * 109.47199 * 295.08181 * 3 2 1 33 33 H 1.09009 * 109.47082 * 60.00137 * 8 6 4 34 34 H 1.08999 * 109.47025 * 179.97438 * 8 6 4 35 35 H 1.09004 * 109.47269 * 300.00181 * 8 6 4 36 36 H 1.08996 * 109.46010 * 181.38215 * 9 6 4 37 37 H 1.08991 * 109.46030 * 301.34671 * 9 6 4 38 38 H 1.09005 * 109.50024 * 58.58445 * 10 9 6 39 39 H 1.08993 * 109.50091 * 178.65229 * 10 9 6 40 40 H 1.09004 * 109.73380 * 295.11414 * 11 10 9 41 41 H 1.09006 * 109.66559 * 174.55391 * 11 10 9 42 42 H 0.97003 * 119.99724 * 355.00855 * 15 13 12 43 43 H 1.09005 * 109.46982 * 60.00326 * 16 15 13 44 44 H 1.08992 * 109.47318 * 300.00472 * 16 15 13 45 45 H 1.09005 * 109.47190 * 60.00745 * 17 16 15 46 46 H 1.09004 * 109.47530 * 300.00241 * 17 16 15 47 47 H 0.97003 * 120.00490 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5650 1.4443 0.1238 5 1 4.0003 0.9023 -0.7158 6 6 3.9774 0.7731 1.4376 7 1 3.7018 -0.2812 1.4097 8 6 3.2642 1.4565 2.6060 9 6 5.4917 0.9013 1.6180 10 6 5.8750 2.3811 1.6906 11 6 5.4850 3.0702 0.3740 12 7 4.0574 2.8285 0.1247 13 6 3.2165 3.8567 -0.1041 14 8 2.0227 3.6531 -0.2124 15 7 3.6990 5.1105 -0.2128 16 6 2.8017 6.2122 -0.5694 17 6 3.5956 7.5190 -0.6245 18 6 2.6724 8.6525 -0.9908 19 1 1.6245 8.4600 -1.1671 20 6 3.1660 9.9351 -1.1018 21 7 4.4422 10.1694 -0.8876 22 14 2.0219 11.3400 -1.5566 23 1 0.9496 11.4553 -0.5358 24 1 1.4141 11.0731 -2.8850 25 1 2.7925 12.6082 -1.6111 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6065 1.9811 0.8427 32 1 1.7504 1.9303 -0.9307 33 1 2.1856 1.3674 2.4757 34 1 3.5576 0.9783 3.5406 35 1 3.5409 2.5105 2.6343 36 1 5.7910 0.4031 2.5401 37 1 5.9987 0.4359 0.7729 38 1 5.3490 2.8530 2.5206 39 1 6.9504 2.4714 1.8430 40 1 6.0738 2.6581 -0.4455 41 1 5.6658 4.1422 0.4535 42 1 4.6403 5.2833 -0.0548 43 1 2.0147 6.2970 0.1800 44 1 2.3555 6.0163 -1.5443 45 1 4.3828 7.4346 -1.3737 46 1 4.0415 7.7147 0.3507 47 1 5.0363 9.4400 -0.6511 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612380257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:17 Heat of formation + Delta-G solvation = -44.419556 kcal Electronic energy + Delta-G solvation = -23572.881101 eV Core-core repulsion = 20369.120809 eV Total energy + Delta-G solvation = -3203.760292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.78818 -38.01159 -35.61563 -34.66827 -33.43867 -32.82922 -31.41756 -29.36893 -27.60771 -26.48366 -24.70978 -23.88128 -22.78536 -21.41432 -21.01084 -20.10268 -18.83194 -17.55326 -16.60667 -16.11396 -15.76157 -15.48937 -14.69196 -14.47855 -14.25338 -13.99515 -13.74751 -13.66645 -13.58863 -13.37086 -12.97059 -12.66423 -12.25229 -12.09836 -11.98695 -11.77843 -11.60436 -11.40748 -11.23100 -11.08279 -11.03545 -10.92676 -10.68563 -10.44528 -10.39259 -10.20861 -10.16233 -9.91504 -8.96978 -8.65217 -8.56601 -8.39326 -8.18784 -6.42829 -4.12380 2.89867 3.44089 3.45690 3.54888 3.64287 4.17979 4.52129 4.58513 4.61761 4.67154 4.85459 4.99917 5.07521 5.09743 5.24955 5.28320 5.34733 5.35475 5.51058 5.54292 5.61966 5.64381 5.69572 5.76055 5.85222 5.91923 5.93561 5.99870 6.01702 6.03306 6.15572 6.22609 6.29700 6.30043 6.51438 6.56488 6.65948 6.86755 6.99471 7.15954 7.36477 7.38249 8.10214 8.34420 8.39747 8.81184 8.99753 9.59450 10.98277 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022120 B = 0.003743 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.523911 B = 7478.621246 C = 8427.309734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.108 4.108 4 C 0.170 3.830 5 H 0.063 0.937 6 C -0.105 4.105 7 H 0.080 0.920 8 C -0.146 4.146 9 C -0.113 4.113 10 C -0.137 4.137 11 C 0.111 3.889 12 N -0.629 5.629 13 C 0.701 3.299 14 O -0.585 6.585 15 N -0.744 5.744 16 C 0.148 3.852 17 C 0.000 4.000 18 C -0.601 4.601 19 H 0.053 0.947 20 C 0.017 3.983 21 N -0.911 5.911 22 Si 1.071 2.929 23 H -0.287 1.287 24 H -0.287 1.287 25 H -0.282 1.282 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.389 0.611 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.012 0.988 46 H 0.012 0.988 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.437 -21.632 4.959 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.145 4.145 4 C 0.066 3.934 5 H 0.081 0.919 6 C -0.124 4.124 7 H 0.098 0.902 8 C -0.203 4.203 9 C -0.151 4.151 10 C -0.176 4.176 11 C -0.012 4.012 12 N -0.368 5.368 13 C 0.403 3.597 14 O -0.464 6.464 15 N -0.400 5.400 16 C 0.025 3.975 17 C -0.037 4.037 18 C -0.639 4.639 19 H 0.071 0.929 20 C -0.187 4.187 21 N -0.547 5.547 22 Si 0.899 3.101 23 H -0.213 1.213 24 H -0.213 1.213 25 H -0.207 1.207 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.224 0.776 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.030 0.970 46 H 0.030 0.970 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.488 -20.095 4.570 20.662 hybrid contribution 0.724 -1.599 0.385 1.797 sum 2.211 -21.694 4.955 22.362 Atomic orbital electron populations 1.21694 0.95946 1.00713 1.02091 1.21776 0.96126 0.98187 1.01105 1.22199 0.92178 0.94281 1.05849 1.21090 0.95861 0.80392 0.96013 0.91913 1.21577 0.95207 0.99906 0.95702 0.90212 1.21873 1.00700 1.01020 0.96692 1.21534 0.95590 0.96204 1.01755 1.22040 1.01231 0.96275 0.98020 1.21683 0.81807 1.00621 0.97122 1.47288 1.07754 1.05571 1.76163 1.16027 0.85007 0.80603 0.78021 1.90922 1.13832 1.82923 1.58746 1.45834 1.12974 1.06610 1.74548 1.21385 0.92283 0.84631 0.99190 1.19444 0.96268 0.91485 0.96519 1.21888 0.96229 0.93685 1.52144 0.92868 1.25881 0.98495 0.99962 0.94342 1.70801 1.04043 1.35998 1.43840 0.83509 0.74598 0.75505 0.76504 1.21310 1.21320 1.20749 0.92852 0.92725 0.93399 0.92774 0.92402 0.89893 0.89523 0.92141 0.93282 0.92280 0.91858 0.91953 0.90990 0.90960 0.91580 0.90317 0.77568 0.92642 0.92781 0.96997 0.96991 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.13 -1.41 5.73 -26.73 -0.15 -1.56 16 3 C -0.11 -1.44 2.66 -26.73 -0.07 -1.51 16 4 C 0.17 2.02 2.70 -67.60 -0.18 1.84 16 5 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 6 C -0.10 -1.01 2.31 -90.50 -0.21 -1.21 16 7 H 0.08 0.68 6.66 -51.93 -0.35 0.33 16 8 C -0.15 -1.56 8.21 37.16 0.30 -1.26 16 9 C -0.11 -0.94 5.43 -26.69 -0.14 -1.08 16 10 C -0.14 -1.23 5.75 -26.38 -0.15 -1.38 16 11 C 0.11 1.19 6.41 -3.48 -0.02 1.17 16 12 N -0.63 -8.51 2.41 -170.64 -0.41 -8.92 16 13 C 0.70 12.38 8.21 -86.91 -0.71 11.67 16 14 O -0.59 -11.92 11.75 5.29 0.06 -11.86 16 15 N -0.74 -13.53 5.46 -65.23 -0.36 -13.89 16 16 C 0.15 3.26 5.62 -4.05 -0.02 3.23 16 17 C 0.00 0.01 4.40 -27.88 -0.12 -0.12 16 18 C -0.60 -17.07 9.11 -34.44 -0.31 -17.39 16 19 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 21 N -0.91 -27.50 13.65 55.43 0.76 -26.74 16 22 Si 1.07 25.22 29.90 -169.99 -5.08 20.13 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.54 6.34 -51.93 -0.33 0.21 16 31 H 0.08 1.30 5.21 -51.93 -0.27 1.02 16 32 H 0.09 1.43 6.46 -51.93 -0.34 1.09 16 33 H 0.06 0.70 6.35 -51.92 -0.33 0.37 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.74 5.97 -51.93 -0.31 0.43 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.73 6.33 -51.93 -0.33 0.40 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.85 5.65 -51.93 -0.29 0.56 16 42 H 0.39 6.24 5.96 -40.82 -0.24 5.99 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.01 0.30 8.01 -51.93 -0.42 -0.11 16 46 H 0.01 0.31 8.01 -51.93 -0.42 -0.11 16 47 H 0.27 7.97 7.22 -40.82 -0.29 7.67 16 LS Contribution 350.04 15.07 5.28 5.28 Total: -1.00 -31.42 350.04 -9.48 -40.90 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -8.19 Total: 3.50 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -1.53 Total: -8.39 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.01 Total: -49.55 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.06 Total: -11.86 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.42 -9.48 -40.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612380257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.518 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds