Wall clock time and date at job start Tue Mar 31 2020 06:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 C 1.52996 * 109.47466 * 185.67041 * 3 2 1 5 5 H 1.08997 * 109.70538 * 186.32224 * 4 3 2 6 6 C 1.53626 * 109.66434 * 306.92263 * 4 3 2 7 7 H 1.08994 * 109.63917 * 54.55193 * 6 4 3 8 8 C 1.53005 * 109.45272 * 294.42771 * 6 4 3 9 9 C 1.53035 * 109.24110 * 174.54734 * 6 4 3 10 10 C 1.53037 * 109.53919 * 298.50642 * 9 6 4 11 11 C 1.53197 * 109.31260 * 61.36671 * 10 9 6 12 12 N 1.46925 * 108.77238 * 305.36447 * 11 10 9 13 13 C 1.34776 * 120.63140 * 233.58268 * 12 11 10 14 14 O 1.21589 * 119.99853 * 186.27149 * 13 12 11 15 15 N 1.34781 * 120.00140 * 6.26739 * 13 12 11 16 16 C 1.46495 * 120.00028 * 174.94138 * 15 13 12 17 17 C 1.52999 * 109.46961 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.47319 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99764 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00266 * 180.02562 * 18 17 16 21 21 N 1.31519 * 120.00106 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00002 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47230 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46837 * 120.00446 * 22 20 18 25 25 H 1.48500 * 109.46936 * 239.99908 * 22 20 18 26 26 H 1.09008 * 109.47088 * 59.99887 * 1 2 3 27 27 H 1.09000 * 109.47360 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47242 * 300.00254 * 1 2 3 29 29 H 1.09000 * 109.47066 * 240.00269 * 2 1 3 30 30 H 1.08998 * 109.47105 * 119.99942 * 2 1 3 31 31 H 1.09000 * 109.47194 * 65.66757 * 3 2 1 32 32 H 1.09003 * 109.47086 * 305.67573 * 3 2 1 33 33 H 1.08998 * 109.47002 * 300.27404 * 8 6 4 34 34 H 1.08997 * 109.46882 * 60.27752 * 8 6 4 35 35 H 1.08999 * 109.47104 * 180.27688 * 8 6 4 36 36 H 1.09000 * 109.46188 * 178.48574 * 9 6 4 37 37 H 1.09006 * 109.45077 * 58.51991 * 9 6 4 38 38 H 1.09001 * 109.49689 * 301.41915 * 10 9 6 39 39 H 1.09001 * 109.52690 * 181.33457 * 10 9 6 40 40 H 1.08999 * 109.58618 * 185.57820 * 11 10 9 41 41 H 1.08996 * 109.58963 * 65.15530 * 11 10 9 42 42 H 0.97006 * 119.99382 * 354.94628 * 15 13 12 43 43 H 1.09006 * 109.46827 * 60.00390 * 16 15 13 44 44 H 1.08998 * 109.47038 * 300.00065 * 16 15 13 45 45 H 1.08993 * 109.47384 * 300.00378 * 17 16 15 46 46 H 1.09006 * 109.47003 * 60.00532 * 17 16 15 47 47 H 0.96998 * 119.99926 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5633 1.4449 -0.1425 5 1 3.9412 2.4611 -0.0307 6 6 4.1845 0.5391 0.9316 7 1 3.7413 -0.4550 0.8734 8 6 3.9209 1.1355 2.3157 9 6 5.6935 0.4402 0.6968 10 6 5.9583 -0.1872 -0.6737 11 6 5.3568 0.7051 -1.7641 12 7 3.9350 0.9239 -1.4651 13 6 2.9902 0.6572 -2.3884 14 8 1.8296 0.9483 -2.1723 15 7 3.3317 0.0677 -3.5514 16 6 2.2928 -0.3229 -4.5075 17 6 2.9439 -0.9646 -5.7343 18 6 1.8752 -1.3670 -6.7176 19 1 0.8355 -1.1830 -6.4904 20 6 2.2246 -1.9701 -7.9072 21 7 3.4906 -2.1946 -8.1836 22 14 0.8998 -2.4682 -9.1263 23 1 -0.4342 -2.1081 -8.5824 24 1 1.1179 -1.7577 -10.4120 25 1 0.9628 -3.9343 -9.3541 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7619 1.9262 0.9364 32 1 1.5960 1.9848 -0.8348 33 1 4.3633 2.1300 2.3730 34 1 2.8461 1.2056 2.4824 35 1 4.3658 0.4955 3.0778 36 1 6.1419 -0.1801 1.4729 37 1 6.1322 1.4376 0.7305 38 1 5.4983 -1.1744 -0.7168 39 1 7.0330 -0.2792 -0.8307 40 1 5.4553 0.2151 -2.7327 41 1 5.8780 1.6622 -1.7818 42 1 4.2656 -0.0979 -3.7552 43 1 1.7313 0.5596 -4.8145 44 1 1.6175 -1.0382 -4.0381 45 1 3.6190 -0.2490 -6.2035 46 1 3.5057 -1.8470 -5.4276 47 1 3.7364 -2.6192 -9.0204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612380258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:24 Heat of formation + Delta-G solvation = -28.663114 kcal Electronic energy + Delta-G solvation = -23786.479978 eV Core-core repulsion = 20583.402937 eV Total energy + Delta-G solvation = -3203.077041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.81035 -37.80348 -35.68681 -34.28464 -33.25762 -32.63960 -31.50948 -29.58712 -27.60155 -26.28502 -24.89328 -23.70820 -22.33240 -21.40018 -21.03030 -20.01953 -19.07215 -17.43208 -16.39370 -15.86019 -15.73100 -14.99882 -14.88203 -14.52828 -14.45805 -13.98964 -13.73781 -13.65684 -13.27038 -12.89668 -12.63357 -12.53656 -12.41229 -12.25632 -11.94052 -11.69298 -11.43970 -11.31543 -11.16461 -11.05060 -10.84742 -10.78972 -10.59293 -10.46731 -10.33997 -10.25154 -9.96334 -9.59615 -9.28559 -8.67262 -8.48160 -8.39170 -8.09177 -6.07924 -4.10266 2.97443 3.29341 3.36998 3.42428 3.61370 4.25492 4.44880 4.64254 4.67572 4.68519 4.88847 5.13721 5.24004 5.26035 5.29353 5.35525 5.43310 5.45713 5.55236 5.60961 5.64961 5.75417 5.80646 5.88843 5.95615 5.97505 5.98136 6.07310 6.16518 6.30556 6.31595 6.41462 6.44011 6.57715 6.62441 6.71945 6.82125 6.94643 7.21295 7.28891 7.58943 7.65599 7.91724 8.28413 8.45308 8.95425 9.10347 9.54521 11.03815 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023868 B = 0.003912 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.815431 B = 7155.804991 C = 8000.008907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C -0.126 4.126 4 C 0.173 3.827 5 H 0.063 0.937 6 C -0.108 4.108 7 H 0.080 0.920 8 C -0.144 4.144 9 C -0.113 4.113 10 C -0.135 4.135 11 C 0.111 3.889 12 N -0.631 5.631 13 C 0.700 3.300 14 O -0.577 6.577 15 N -0.742 5.742 16 C 0.141 3.859 17 C 0.013 3.987 18 C -0.518 4.518 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.061 0.939 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.116 0.884 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.390 0.610 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.351 6.238 19.521 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 C -0.163 4.163 4 C 0.069 3.931 5 H 0.081 0.919 6 C -0.128 4.128 7 H 0.098 0.902 8 C -0.202 4.202 9 C -0.151 4.151 10 C -0.174 4.174 11 C -0.012 4.012 12 N -0.370 5.370 13 C 0.403 3.597 14 O -0.457 6.457 15 N -0.398 5.398 16 C 0.018 3.982 17 C -0.025 4.025 18 C -0.557 4.557 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.723 3.277 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.134 0.866 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.225 0.775 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.578 6.354 19.503 21.017 hybrid contribution 0.064 -0.503 -0.841 0.982 sum 4.642 5.851 18.663 20.101 Atomic orbital electron populations 1.21633 0.96491 1.00477 1.01181 1.21583 0.95687 0.96541 1.00376 1.22304 0.92652 0.99070 1.02272 1.21166 0.96364 0.95336 0.80239 0.91917 1.21741 0.95569 1.00681 0.94797 0.90199 1.21794 1.02013 1.00608 0.95764 1.21573 0.95838 1.00891 0.96755 1.21922 1.00812 0.99646 0.95003 1.21589 0.81619 0.99448 0.98577 1.47284 1.05384 1.70163 1.14130 1.15991 0.84589 0.78814 0.80314 1.90832 1.18033 1.58555 1.78267 1.45868 1.11164 1.64076 1.18695 1.21539 0.89175 0.98494 0.88962 1.19320 0.96695 0.95785 0.90684 1.21092 0.93235 1.39301 1.02095 0.92197 1.24994 0.95479 0.95690 0.98157 1.69969 1.15854 1.43135 1.24427 0.86470 0.82030 0.78174 0.80981 1.19565 1.20962 1.20964 0.91998 0.93965 0.94195 0.91130 0.94530 0.93718 0.86621 0.92785 0.92120 0.92744 0.91952 0.92013 0.91361 0.90870 0.90162 0.91686 0.77483 0.92813 0.92992 0.96083 0.96116 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.83 37.16 0.37 -1.62 16 2 C -0.10 -1.50 4.19 -26.73 -0.11 -1.61 16 3 C -0.13 -1.69 4.08 -26.73 -0.11 -1.80 16 4 C 0.17 2.07 2.68 -67.37 -0.18 1.89 16 5 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 6 C -0.11 -1.08 1.98 -90.27 -0.18 -1.26 16 7 H 0.08 0.92 6.18 -51.93 -0.32 0.60 16 8 C -0.14 -1.20 8.96 37.16 0.33 -0.86 16 9 C -0.11 -0.97 5.16 -26.69 -0.14 -1.11 16 10 C -0.14 -1.24 6.08 -26.61 -0.16 -1.41 16 11 C 0.11 1.20 6.43 -3.71 -0.02 1.17 16 12 N -0.63 -8.49 2.92 -170.65 -0.50 -8.99 16 13 C 0.70 12.00 6.78 -86.91 -0.59 11.41 16 14 O -0.58 -11.12 9.89 5.29 0.05 -11.06 16 15 N -0.74 -13.27 5.47 -65.23 -0.36 -13.62 16 16 C 0.14 3.03 5.62 -4.05 -0.02 3.01 16 17 C 0.01 0.32 5.09 -27.88 -0.14 0.17 16 18 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 19 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 22 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 H 0.06 0.99 7.74 -51.92 -0.40 0.59 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 1.22 5.27 -51.93 -0.27 0.95 16 30 H 0.04 0.48 6.58 -51.93 -0.34 0.13 16 31 H 0.04 0.53 6.97 -51.93 -0.36 0.16 16 32 H 0.12 1.90 5.57 -53.78 -0.30 1.60 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.53 6.79 -51.93 -0.35 0.17 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.88 5.56 -51.93 -0.29 0.59 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.39 6.24 5.93 -40.82 -0.24 6.00 16 43 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 350.50 15.07 5.28 5.28 Total: -1.00 -29.87 350.50 -9.52 -39.39 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -8.34 Total: 3.25 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -1.37 Total: -5.22 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.12 Total: -48.07 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.05 Total: -11.06 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.87 -9.52 -39.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612380258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.725 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds