Wall clock time and date at job start Tue Mar 31 2020 06:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 C 1.52996 * 109.47466 * 185.67041 * 3 2 1 5 5 H 1.08997 * 109.70538 * 186.32224 * 4 3 2 6 6 C 1.53626 * 109.66434 * 306.92263 * 4 3 2 7 7 H 1.08994 * 109.63917 * 54.55193 * 6 4 3 8 8 C 1.53005 * 109.45272 * 294.42771 * 6 4 3 9 9 C 1.53035 * 109.24110 * 174.54734 * 6 4 3 10 10 C 1.53037 * 109.53919 * 298.50642 * 9 6 4 11 11 C 1.53197 * 109.31260 * 61.36671 * 10 9 6 12 12 N 1.46925 * 108.77238 * 305.36447 * 11 10 9 13 13 C 1.34776 * 120.63140 * 233.58268 * 12 11 10 14 14 O 1.21589 * 119.99853 * 186.27149 * 13 12 11 15 15 N 1.34781 * 120.00140 * 6.26739 * 13 12 11 16 16 C 1.46495 * 120.00028 * 174.94138 * 15 13 12 17 17 C 1.52999 * 109.46961 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.47319 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99764 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00266 * 180.02562 * 18 17 16 21 21 N 1.31519 * 120.00106 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00002 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47230 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46837 * 120.00446 * 22 20 18 25 25 H 1.48500 * 109.46936 * 239.99908 * 22 20 18 26 26 H 1.09008 * 109.47088 * 59.99887 * 1 2 3 27 27 H 1.09000 * 109.47360 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47242 * 300.00254 * 1 2 3 29 29 H 1.09000 * 109.47066 * 240.00269 * 2 1 3 30 30 H 1.08998 * 109.47105 * 119.99942 * 2 1 3 31 31 H 1.09000 * 109.47194 * 65.66757 * 3 2 1 32 32 H 1.09003 * 109.47086 * 305.67573 * 3 2 1 33 33 H 1.08998 * 109.47002 * 300.27404 * 8 6 4 34 34 H 1.08997 * 109.46882 * 60.27752 * 8 6 4 35 35 H 1.08999 * 109.47104 * 180.27688 * 8 6 4 36 36 H 1.09000 * 109.46188 * 178.48574 * 9 6 4 37 37 H 1.09006 * 109.45077 * 58.51991 * 9 6 4 38 38 H 1.09001 * 109.49689 * 301.41915 * 10 9 6 39 39 H 1.09001 * 109.52690 * 181.33457 * 10 9 6 40 40 H 1.08999 * 109.58618 * 185.57820 * 11 10 9 41 41 H 1.08996 * 109.58963 * 65.15530 * 11 10 9 42 42 H 0.97006 * 119.99382 * 354.94628 * 15 13 12 43 43 H 1.09006 * 109.46827 * 60.00390 * 16 15 13 44 44 H 1.08998 * 109.47038 * 300.00065 * 16 15 13 45 45 H 1.08993 * 109.47384 * 300.00378 * 17 16 15 46 46 H 1.09006 * 109.47003 * 60.00532 * 17 16 15 47 47 H 0.96998 * 119.99926 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5633 1.4449 -0.1425 5 1 3.9412 2.4611 -0.0307 6 6 4.1845 0.5391 0.9316 7 1 3.7413 -0.4550 0.8734 8 6 3.9209 1.1355 2.3157 9 6 5.6935 0.4402 0.6968 10 6 5.9583 -0.1872 -0.6737 11 6 5.3568 0.7051 -1.7641 12 7 3.9350 0.9239 -1.4651 13 6 2.9902 0.6572 -2.3884 14 8 1.8296 0.9483 -2.1723 15 7 3.3317 0.0677 -3.5514 16 6 2.2928 -0.3229 -4.5075 17 6 2.9439 -0.9646 -5.7343 18 6 1.8752 -1.3670 -6.7176 19 1 0.8355 -1.1830 -6.4904 20 6 2.2246 -1.9701 -7.9072 21 7 3.4906 -2.1946 -8.1836 22 14 0.8998 -2.4682 -9.1263 23 1 -0.4342 -2.1081 -8.5824 24 1 1.1179 -1.7577 -10.4120 25 1 0.9628 -3.9343 -9.3541 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7619 1.9262 0.9364 32 1 1.5960 1.9848 -0.8348 33 1 4.3633 2.1300 2.3730 34 1 2.8461 1.2056 2.4824 35 1 4.3658 0.4955 3.0778 36 1 6.1419 -0.1801 1.4729 37 1 6.1322 1.4376 0.7305 38 1 5.4983 -1.1744 -0.7168 39 1 7.0330 -0.2792 -0.8307 40 1 5.4553 0.2151 -2.7327 41 1 5.8780 1.6622 -1.7818 42 1 4.2656 -0.0979 -3.7552 43 1 1.7313 0.5596 -4.8145 44 1 1.6175 -1.0382 -4.0381 45 1 3.6190 -0.2490 -6.2035 46 1 3.5057 -1.8470 -5.4276 47 1 3.7364 -2.6192 -9.0204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612380258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:22 Heat of formation + Delta-G solvation = -45.645730 kcal Electronic energy + Delta-G solvation = -23787.216400 eV Core-core repulsion = 20583.402937 eV Total energy + Delta-G solvation = -3203.813462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.97391 -38.94724 -37.01553 -35.81693 -34.49835 -34.28893 -32.45089 -31.39199 -28.69350 -27.12662 -26.68081 -24.96701 -23.30083 -22.94329 -22.23656 -21.29616 -20.16437 -18.68107 -18.40224 -17.08831 -17.02552 -16.49706 -16.12092 -15.82080 -15.47464 -15.36864 -15.23196 -14.61801 -14.35385 -14.28204 -14.06581 -13.80823 -13.36935 -13.30355 -13.16177 -12.96606 -12.92573 -12.59123 -12.49525 -12.31569 -12.25985 -12.19264 -11.76847 -11.62023 -11.59400 -11.43759 -11.38062 -11.28413 -11.01331 -10.60082 -10.01619 -9.81643 -9.31268 -8.24180 -6.34416 1.40691 1.41485 1.54789 1.77002 2.27140 2.40742 3.05272 3.10547 3.80968 3.85031 3.87859 4.07616 4.19149 4.26333 4.35945 4.39666 4.46363 4.53859 4.59005 4.61098 4.73908 4.81581 4.86582 4.87570 4.88351 4.92691 4.96452 5.07186 5.12701 5.20292 5.24955 5.29178 5.32106 5.37036 5.41958 5.46765 5.54562 5.57296 5.59611 5.69144 5.83210 5.95298 6.07096 6.18419 6.78941 7.10532 7.35082 7.74753 8.88025 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023868 B = 0.003912 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.815431 B = 7155.804991 C = 8000.008907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 C -0.120 4.120 4 C 0.168 3.832 5 H 0.077 0.923 6 C -0.103 4.103 7 H 0.062 0.938 8 C -0.140 4.140 9 C -0.109 4.109 10 C -0.131 4.131 11 C 0.104 3.896 12 N -0.625 5.625 13 C 0.695 3.305 14 O -0.602 6.602 15 N -0.742 5.742 16 C 0.166 3.834 17 C 0.025 3.975 18 C -0.544 4.544 19 H 0.058 0.942 20 C 0.007 3.993 21 N -0.927 5.927 22 Si 0.965 3.035 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.035 0.965 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.398 0.602 43 H 0.041 0.959 44 H 0.040 0.960 45 H 0.006 0.994 46 H 0.005 0.995 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.136 6.637 21.048 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.136 4.136 3 C -0.157 4.157 4 C 0.065 3.935 5 H 0.095 0.905 6 C -0.122 4.122 7 H 0.080 0.920 8 C -0.198 4.198 9 C -0.147 4.147 10 C -0.169 4.169 11 C -0.019 4.019 12 N -0.362 5.362 13 C 0.398 3.602 14 O -0.483 6.483 15 N -0.400 5.400 16 C 0.041 3.959 17 C -0.013 4.013 18 C -0.583 4.583 19 H 0.076 0.924 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.789 3.211 23 H -0.190 1.190 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.236 0.764 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.024 0.976 46 H 0.024 0.976 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.403 6.765 21.070 22.779 hybrid contribution -0.149 -0.603 -1.263 1.407 sum 5.254 6.162 19.808 21.399 Atomic orbital electron populations 1.21601 0.96533 1.00455 1.00903 1.21486 0.95652 0.97068 0.99396 1.22134 0.93713 0.97969 1.01915 1.21371 0.95574 0.96582 0.79970 0.90546 1.21673 0.96398 0.99171 0.94960 0.92004 1.21769 1.01947 1.01371 0.94684 1.21570 0.94686 1.01884 0.96513 1.21900 1.01807 0.98318 0.94878 1.21843 0.80083 1.00881 0.99053 1.47360 1.05928 1.69095 1.13859 1.16142 0.84964 0.78700 0.80429 1.90853 1.19374 1.59411 1.78705 1.45618 1.10823 1.64731 1.18788 1.20964 0.89344 0.97244 0.88339 1.19111 0.95821 0.94811 0.91519 1.21480 0.93784 1.39806 1.03198 0.92389 1.25866 0.97786 0.95474 1.00008 1.70068 1.17715 1.43656 1.25194 0.85397 0.79202 0.78023 0.78433 1.19002 1.20176 1.20164 0.94572 0.93884 0.92052 0.94457 0.92938 0.91616 0.89832 0.91627 0.92601 0.91551 0.90532 0.90647 0.93007 0.88663 0.90826 0.89709 0.76437 0.94056 0.94197 0.97593 0.97634 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.83 71.98 0.71 -3.21 16 2 C -0.10 -2.83 4.19 30.59 0.13 -2.71 16 3 C -0.12 -3.16 4.08 30.59 0.12 -3.03 16 4 C 0.17 3.77 2.68 45.12 0.12 3.89 16 5 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 6 C -0.10 -1.80 1.98 -10.57 -0.02 -1.82 16 7 H 0.06 1.33 6.18 -2.39 -0.01 1.31 16 8 C -0.14 -1.88 8.96 71.98 0.65 -1.24 16 9 C -0.11 -1.52 5.16 30.62 0.16 -1.37 16 10 C -0.13 -2.11 6.08 30.67 0.19 -1.93 16 11 C 0.10 2.08 6.43 86.36 0.56 2.64 16 12 N -0.63 -16.47 2.92 -812.07 -2.37 -18.84 16 13 C 0.70 24.39 6.78 179.05 1.21 25.60 16 14 O -0.60 -24.10 9.89 -4.00 -0.04 -24.14 16 15 N -0.74 -27.41 5.47 -478.54 -2.62 -30.02 16 16 C 0.17 7.40 5.62 86.38 0.49 7.89 16 17 C 0.02 1.29 5.09 29.85 0.15 1.44 16 18 C -0.54 -30.94 9.11 25.60 0.23 -30.71 16 19 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 20 C 0.01 0.42 5.46 84.65 0.46 0.88 16 21 N -0.93 -54.79 13.29 21.45 0.28 -54.51 16 22 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 26 H 0.04 1.19 7.74 -2.38 -0.02 1.18 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.04 1.32 5.27 -2.39 -0.01 1.31 16 30 H 0.05 1.32 6.58 -2.39 -0.02 1.30 16 31 H 0.07 1.44 6.97 -2.39 -0.02 1.42 16 32 H 0.08 2.80 5.57 -31.80 -0.18 2.63 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.81 6.79 -2.39 -0.02 0.79 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.57 5.56 -2.39 -0.01 1.56 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.40 13.11 5.93 -92.70 -0.55 12.56 16 43 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 47 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -65.50 350.50 2.65 -62.85 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.22 Total: 22.21 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 5.15 Total: -3.68 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -4.71 Total: -103.37 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.04 Total: -24.14 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -65.50 2.65 -62.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612380258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.202 kcal (2) G-P(sol) polarization free energy of solvation -65.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds