Wall clock time and date at job start Tue Mar 31 2020 06:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46888 * 2 1 4 4 C 1.52998 * 109.47045 * 174.25074 * 3 2 1 5 5 H 1.09001 * 109.58915 * 175.24705 * 4 3 2 6 6 C 1.53206 * 109.58548 * 54.82582 * 4 3 2 7 7 H 1.09001 * 109.49467 * 305.55935 * 6 4 3 8 8 C 1.52999 * 109.49402 * 65.62546 * 6 4 3 9 9 C 1.53039 * 109.33896 * 185.59241 * 6 4 3 10 10 C 1.53042 * 109.53796 * 61.31758 * 9 6 4 11 11 C 1.53198 * 109.33871 * 298.68043 * 10 9 6 12 12 N 1.46925 * 108.77395 * 54.62321 * 11 10 9 13 13 C 1.34773 * 120.63338 * 126.36840 * 12 11 10 14 14 O 1.21586 * 120.00109 * 174.04429 * 13 12 11 15 15 N 1.34772 * 119.99922 * 354.04413 * 13 12 11 16 16 C 1.46505 * 120.00097 * 174.62296 * 15 13 12 17 17 C 1.53001 * 109.47064 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.47056 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99566 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99978 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00081 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00111 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47100 * 90.00044 * 22 20 18 24 24 H 1.48499 * 109.47047 * 209.99766 * 22 20 18 25 25 H 1.48498 * 109.47038 * 329.99908 * 22 20 18 26 26 H 1.08994 * 109.46948 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47129 * 300.00161 * 1 2 3 28 28 H 1.08996 * 109.47315 * 59.99920 * 1 2 3 29 29 H 1.09000 * 109.47249 * 240.00301 * 2 1 3 30 30 H 1.08996 * 109.47315 * 120.00080 * 2 1 3 31 31 H 1.08996 * 109.46966 * 54.25473 * 3 2 1 32 32 H 1.08997 * 109.46987 * 294.24948 * 3 2 1 33 33 H 1.08998 * 109.47330 * 60.00508 * 8 6 4 34 34 H 1.09000 * 109.46492 * 179.97438 * 8 6 4 35 35 H 1.09001 * 109.47503 * 299.99861 * 8 6 4 36 36 H 1.08999 * 109.43534 * 301.31648 * 9 6 4 37 37 H 1.08998 * 109.48552 * 181.35341 * 9 6 4 38 38 H 1.08996 * 109.49653 * 178.71648 * 10 9 6 39 39 H 1.09003 * 109.49755 * 58.64684 * 10 9 6 40 40 H 1.08998 * 109.58584 * 174.40310 * 11 10 9 41 41 H 1.08994 * 109.58853 * 294.83543 * 11 10 9 42 42 H 0.96999 * 120.00555 * 354.61678 * 15 13 12 43 43 H 1.08998 * 109.46884 * 300.00024 * 16 15 13 44 44 H 1.08999 * 109.47157 * 59.99434 * 16 15 13 45 45 H 1.08998 * 109.47481 * 299.99894 * 17 16 15 46 46 H 1.09005 * 109.47070 * 60.00079 * 17 16 15 47 47 H 0.97000 * 120.00228 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5631 1.4450 0.1445 5 1 3.9366 2.4656 0.0602 6 6 4.1845 0.5754 -0.9532 7 1 3.7403 -0.4195 -0.9241 8 6 3.9217 1.2124 -2.3192 9 6 5.6934 0.4682 -0.7213 10 6 5.9575 -0.1979 0.6310 11 6 5.3562 0.6629 1.7465 12 7 3.9346 0.8911 1.4537 13 6 2.9893 0.5975 2.3683 14 8 1.8281 0.8903 2.1580 15 7 3.3311 -0.0206 3.5161 16 6 2.3261 -0.2342 4.5605 17 6 2.9699 -0.9517 5.7486 18 6 1.9363 -1.1708 6.8232 19 1 0.9216 -0.8325 6.6734 20 6 2.2858 -1.8040 7.9970 21 7 1.3836 -1.9957 8.9346 22 14 4.0406 -2.3897 8.2557 23 1 4.8343 -1.3086 8.8933 24 1 4.0385 -3.5865 9.1348 25 1 4.6440 -2.7395 6.9447 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.5950 1.9852 0.8341 32 1 1.7631 1.9258 -0.9370 33 1 4.3671 2.2068 -2.3482 34 1 4.3644 0.5936 -3.0997 35 1 2.8469 1.2907 -2.4829 36 1 6.1330 1.4656 -0.7267 37 1 6.1415 -0.1302 -1.5145 38 1 7.0321 -0.2946 0.7853 39 1 5.4973 -1.1860 0.6458 40 1 5.4541 0.1451 2.7007 41 1 5.8779 1.6188 1.7919 42 1 4.2425 -0.3242 3.6508 43 1 1.9314 0.7279 4.8870 44 1 1.5145 -0.8444 4.1643 45 1 3.3644 -1.9138 5.4219 46 1 3.7818 -0.3418 6.1449 47 1 1.6294 -2.4415 9.7603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612380259.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:28 Heat of formation + Delta-G solvation = -22.955384 kcal Electronic energy + Delta-G solvation = -23843.359510 eV Core-core repulsion = 20640.529974 eV Total energy + Delta-G solvation = -3202.829535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91408 -37.89840 -35.79615 -34.36847 -33.31254 -32.61410 -31.58006 -30.04749 -27.72562 -26.35753 -25.03304 -23.70991 -22.37523 -21.42662 -20.83330 -20.16092 -19.10056 -17.49277 -16.87833 -15.92259 -15.82256 -15.11238 -14.96194 -14.60324 -14.20809 -14.07658 -13.86264 -13.73576 -13.33412 -13.08011 -12.70545 -12.61664 -12.54434 -12.42961 -12.00464 -11.74641 -11.50901 -11.45221 -11.35486 -11.22243 -10.92785 -10.84880 -10.49029 -10.39225 -10.30519 -10.10395 -10.02274 -9.90167 -9.33501 -8.77181 -8.61265 -8.48589 -8.20949 -6.09765 -4.09521 2.89216 3.25544 3.33196 3.34521 3.52676 4.17635 4.38665 4.56580 4.60802 4.61820 4.81221 5.07088 5.17213 5.21196 5.23248 5.29534 5.38441 5.42561 5.49419 5.54870 5.58349 5.70522 5.74605 5.83795 5.90065 5.91559 5.95037 6.02011 6.09855 6.14220 6.27427 6.28274 6.37200 6.51958 6.58927 6.61614 6.66867 6.84019 7.03751 7.14597 7.26968 7.31981 7.69737 8.30688 8.47346 8.94662 9.00827 9.50595 11.03363 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022481 B = 0.004225 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.177023 B = 6625.119848 C = 7550.113132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C -0.123 4.123 4 C 0.172 3.828 5 H 0.064 0.936 6 C -0.109 4.109 7 H 0.080 0.920 8 C -0.144 4.144 9 C -0.113 4.113 10 C -0.136 4.136 11 C 0.112 3.888 12 N -0.631 5.631 13 C 0.700 3.300 14 O -0.573 6.573 15 N -0.746 5.746 16 C 0.149 3.851 17 C -0.021 4.021 18 C -0.521 4.521 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.899 5.899 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.267 1.267 26 H 0.041 0.959 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.388 0.612 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.020 0.980 46 H 0.016 0.984 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.184 5.697 -21.677 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C -0.160 4.160 4 C 0.069 3.931 5 H 0.082 0.918 6 C -0.128 4.128 7 H 0.098 0.902 8 C -0.202 4.202 9 C -0.151 4.151 10 C -0.175 4.175 11 C -0.012 4.012 12 N -0.369 5.369 13 C 0.403 3.597 14 O -0.452 6.452 15 N -0.402 5.402 16 C 0.026 3.974 17 C -0.059 4.059 18 C -0.559 4.559 19 H 0.094 0.906 20 C -0.133 4.133 21 N -0.537 5.537 22 Si 0.709 3.291 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.191 1.191 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.223 0.777 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.038 0.962 46 H 0.034 0.966 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.266 5.846 -21.592 24.213 hybrid contribution 1.519 -0.596 0.375 1.674 sum 10.785 5.249 -21.217 24.373 Atomic orbital electron populations 1.21626 0.96418 1.00518 1.01197 1.21649 0.95809 0.96501 1.00386 1.22243 0.92559 0.99047 1.02126 1.21085 0.96421 0.95202 0.80418 0.91844 1.21664 0.95545 1.00746 0.94857 0.90217 1.21797 1.02072 1.00488 0.95840 1.21571 0.95867 1.00804 0.96820 1.21935 1.00809 0.99625 0.95094 1.21587 0.81682 0.99641 0.98293 1.47287 1.05292 1.68669 1.15658 1.15936 0.84617 0.79073 0.80082 1.90879 1.17721 1.59234 1.77329 1.45852 1.14532 1.62375 1.17430 1.21330 0.89854 1.00204 0.85977 1.19789 0.97300 0.95406 0.93433 1.20920 0.97215 1.38574 0.99196 0.90603 1.24997 0.97253 0.95299 0.95741 1.69907 1.33835 1.42838 1.07166 0.86757 0.85391 0.78582 0.78364 1.20252 1.21293 1.19140 0.93948 0.91961 0.94204 0.94673 0.90876 0.87029 0.93595 0.92754 0.92714 0.92062 0.91964 0.91907 0.90881 0.91409 0.90317 0.91575 0.77676 0.92347 0.92161 0.96159 0.96620 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.81 37.16 0.36 -1.60 16 2 C -0.11 -1.49 4.22 -26.73 -0.11 -1.60 16 3 C -0.12 -1.60 4.11 -26.73 -0.11 -1.71 16 4 C 0.17 1.97 2.66 -67.59 -0.18 1.79 16 5 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 6 C -0.11 -1.02 2.02 -90.49 -0.18 -1.20 16 7 H 0.08 0.87 6.17 -51.93 -0.32 0.55 16 8 C -0.14 -1.14 8.97 37.16 0.33 -0.80 16 9 C -0.11 -0.90 5.17 -26.69 -0.14 -1.04 16 10 C -0.14 -1.14 6.08 -26.61 -0.16 -1.30 16 11 C 0.11 1.11 6.43 -3.71 -0.02 1.08 16 12 N -0.63 -8.04 2.93 -170.90 -0.50 -8.54 16 13 C 0.70 11.48 6.73 -86.93 -0.58 10.89 16 14 O -0.57 -10.72 9.77 5.29 0.05 -10.67 16 15 N -0.75 -12.52 5.45 -65.22 -0.36 -12.88 16 16 C 0.15 3.06 5.62 -4.04 -0.02 3.04 16 17 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 18 C -0.52 -14.62 9.66 -34.44 -0.33 -14.95 16 19 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 22 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.99 7.71 -51.93 -0.40 0.59 16 28 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.03 0.45 6.58 -51.93 -0.34 0.10 16 30 H 0.07 1.23 5.07 -51.93 -0.26 0.96 16 31 H 0.11 1.79 5.70 -53.10 -0.30 1.48 16 32 H 0.05 0.52 6.86 -51.93 -0.36 0.17 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.51 6.72 -51.93 -0.35 0.16 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.77 5.59 -51.93 -0.29 0.48 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.39 5.65 5.98 -40.82 -0.24 5.40 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 46 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 LS Contribution 346.57 15.07 5.22 5.22 Total: -1.00 -30.61 346.57 -9.14 -39.74 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -8.29 Total: 3.49 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -1.36 Total: -6.13 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.08 Total: -48.08 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.05 Total: -10.67 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.61 -9.14 -39.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612380259.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.787 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds