Wall clock time and date at job start Tue Mar 31 2020 06:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46888 * 2 1 4 4 C 1.52998 * 109.47045 * 174.25074 * 3 2 1 5 5 H 1.09001 * 109.58915 * 175.24705 * 4 3 2 6 6 C 1.53206 * 109.58548 * 54.82582 * 4 3 2 7 7 H 1.09001 * 109.49467 * 305.55935 * 6 4 3 8 8 C 1.52999 * 109.49402 * 65.62546 * 6 4 3 9 9 C 1.53039 * 109.33896 * 185.59241 * 6 4 3 10 10 C 1.53042 * 109.53796 * 61.31758 * 9 6 4 11 11 C 1.53198 * 109.33871 * 298.68043 * 10 9 6 12 12 N 1.46925 * 108.77395 * 54.62321 * 11 10 9 13 13 C 1.34773 * 120.63338 * 126.36840 * 12 11 10 14 14 O 1.21586 * 120.00109 * 174.04429 * 13 12 11 15 15 N 1.34772 * 119.99922 * 354.04413 * 13 12 11 16 16 C 1.46505 * 120.00097 * 174.62296 * 15 13 12 17 17 C 1.53001 * 109.47064 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.47056 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99566 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99978 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00081 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00111 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47100 * 90.00044 * 22 20 18 24 24 H 1.48499 * 109.47047 * 209.99766 * 22 20 18 25 25 H 1.48498 * 109.47038 * 329.99908 * 22 20 18 26 26 H 1.08994 * 109.46948 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47129 * 300.00161 * 1 2 3 28 28 H 1.08996 * 109.47315 * 59.99920 * 1 2 3 29 29 H 1.09000 * 109.47249 * 240.00301 * 2 1 3 30 30 H 1.08996 * 109.47315 * 120.00080 * 2 1 3 31 31 H 1.08996 * 109.46966 * 54.25473 * 3 2 1 32 32 H 1.08997 * 109.46987 * 294.24948 * 3 2 1 33 33 H 1.08998 * 109.47330 * 60.00508 * 8 6 4 34 34 H 1.09000 * 109.46492 * 179.97438 * 8 6 4 35 35 H 1.09001 * 109.47503 * 299.99861 * 8 6 4 36 36 H 1.08999 * 109.43534 * 301.31648 * 9 6 4 37 37 H 1.08998 * 109.48552 * 181.35341 * 9 6 4 38 38 H 1.08996 * 109.49653 * 178.71648 * 10 9 6 39 39 H 1.09003 * 109.49755 * 58.64684 * 10 9 6 40 40 H 1.08998 * 109.58584 * 174.40310 * 11 10 9 41 41 H 1.08994 * 109.58853 * 294.83543 * 11 10 9 42 42 H 0.96999 * 120.00555 * 354.61678 * 15 13 12 43 43 H 1.08998 * 109.46884 * 300.00024 * 16 15 13 44 44 H 1.08999 * 109.47157 * 59.99434 * 16 15 13 45 45 H 1.08998 * 109.47481 * 299.99894 * 17 16 15 46 46 H 1.09005 * 109.47070 * 60.00079 * 17 16 15 47 47 H 0.97000 * 120.00228 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5631 1.4450 0.1445 5 1 3.9366 2.4656 0.0602 6 6 4.1845 0.5754 -0.9532 7 1 3.7403 -0.4195 -0.9241 8 6 3.9217 1.2124 -2.3192 9 6 5.6934 0.4682 -0.7213 10 6 5.9575 -0.1979 0.6310 11 6 5.3562 0.6629 1.7465 12 7 3.9346 0.8911 1.4537 13 6 2.9893 0.5975 2.3683 14 8 1.8281 0.8903 2.1580 15 7 3.3311 -0.0206 3.5161 16 6 2.3261 -0.2342 4.5605 17 6 2.9699 -0.9517 5.7486 18 6 1.9363 -1.1708 6.8232 19 1 0.9216 -0.8325 6.6734 20 6 2.2858 -1.8040 7.9970 21 7 1.3836 -1.9957 8.9346 22 14 4.0406 -2.3897 8.2557 23 1 4.8343 -1.3086 8.8933 24 1 4.0385 -3.5865 9.1348 25 1 4.6440 -2.7395 6.9447 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.5950 1.9852 0.8341 32 1 1.7631 1.9258 -0.9370 33 1 4.3671 2.2068 -2.3482 34 1 4.3644 0.5936 -3.0997 35 1 2.8469 1.2907 -2.4829 36 1 6.1330 1.4656 -0.7267 37 1 6.1415 -0.1302 -1.5145 38 1 7.0321 -0.2946 0.7853 39 1 5.4973 -1.1860 0.6458 40 1 5.4541 0.1451 2.7007 41 1 5.8779 1.6188 1.7919 42 1 4.2425 -0.3242 3.6508 43 1 1.9314 0.7279 4.8870 44 1 1.5145 -0.8444 4.1643 45 1 3.3644 -1.9138 5.4219 46 1 3.7818 -0.3418 6.1449 47 1 1.6294 -2.4415 9.7603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612380259.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:27 Heat of formation + Delta-G solvation = -41.682936 kcal Electronic energy + Delta-G solvation = -23844.171597 eV Core-core repulsion = 20640.529974 eV Total energy + Delta-G solvation = -3203.641623 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.01060 -38.97110 -37.06721 -35.80177 -34.50947 -34.29423 -32.46743 -31.81792 -28.76117 -27.13102 -26.71919 -24.90955 -23.30041 -22.70844 -22.20457 -21.36441 -20.14607 -18.96963 -18.58153 -17.07672 -17.05493 -16.37978 -16.10108 -15.80359 -15.52561 -15.38768 -15.28565 -14.73071 -14.52534 -14.35980 -14.12772 -13.76812 -13.41617 -13.32315 -13.24376 -13.02576 -12.96252 -12.59731 -12.31864 -12.20195 -12.17744 -12.06764 -11.79967 -11.73854 -11.61274 -11.48236 -11.40344 -11.28967 -11.00861 -10.78339 -10.05069 -9.83242 -9.32194 -8.29868 -6.36972 1.38259 1.41210 1.52432 1.75227 2.25878 2.36786 3.03017 3.05062 3.80843 3.85015 3.87930 4.08123 4.19497 4.25745 4.35530 4.36429 4.39992 4.47294 4.58985 4.60084 4.73528 4.76675 4.80764 4.87023 4.87974 4.92134 4.96323 5.06825 5.11211 5.17686 5.20165 5.26537 5.30357 5.35339 5.41102 5.42300 5.43149 5.53137 5.56621 5.61297 5.77729 5.94109 6.06126 6.23866 6.70206 7.10763 7.27579 7.74279 8.87045 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022481 B = 0.004225 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.177023 B = 6625.119848 C = 7550.113132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 C -0.117 4.117 4 C 0.169 3.831 5 H 0.076 0.924 6 C -0.103 4.103 7 H 0.063 0.937 8 C -0.141 4.141 9 C -0.110 4.110 10 C -0.131 4.131 11 C 0.104 3.896 12 N -0.624 5.624 13 C 0.694 3.306 14 O -0.602 6.602 15 N -0.740 5.740 16 C 0.169 3.831 17 C -0.010 4.010 18 C -0.538 4.538 19 H 0.028 0.972 20 C 0.004 3.996 21 N -0.951 5.951 22 Si 0.959 3.041 23 H -0.264 1.264 24 H -0.286 1.286 25 H -0.239 1.239 26 H 0.041 0.959 27 H 0.033 0.967 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.402 0.598 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.981 5.747 -23.849 28.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.137 4.137 3 C -0.154 4.154 4 C 0.066 3.934 5 H 0.093 0.907 6 C -0.122 4.122 7 H 0.081 0.919 8 C -0.199 4.199 9 C -0.147 4.147 10 C -0.169 4.169 11 C -0.019 4.019 12 N -0.362 5.362 13 C 0.396 3.604 14 O -0.483 6.483 15 N -0.398 5.398 16 C 0.045 3.955 17 C -0.048 4.048 18 C -0.576 4.576 19 H 0.047 0.953 20 C -0.193 4.193 21 N -0.591 5.591 22 Si 0.781 3.219 23 H -0.189 1.189 24 H -0.212 1.212 25 H -0.162 1.162 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.239 0.761 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.107 5.912 -23.817 27.821 hybrid contribution 0.217 -0.558 1.006 1.171 sum 13.324 5.354 -22.811 26.954 Atomic orbital electron populations 1.21598 0.96758 1.00390 1.00776 1.21545 0.95511 0.97098 0.99549 1.22076 0.93857 0.97894 1.01615 1.21252 0.95393 0.96341 0.80442 0.90657 1.21593 0.96525 0.99323 0.94754 0.91890 1.21777 1.01895 1.01176 0.95022 1.21572 0.94527 1.01716 0.96922 1.21914 1.01921 0.98467 0.94638 1.21873 0.79859 1.01022 0.99124 1.47357 1.05980 1.67578 1.15246 1.16119 0.84899 0.78989 0.80353 1.90900 1.19336 1.60174 1.77926 1.45511 1.14351 1.63013 1.16966 1.20775 0.90019 0.98464 0.86289 1.19623 0.96211 0.96432 0.92552 1.21241 0.96620 1.38527 1.01211 0.95341 1.26073 1.02841 0.95262 0.95088 1.70079 1.36833 1.44148 1.08029 0.85541 0.78662 0.78143 0.79542 1.18860 1.21192 1.16188 0.93946 0.94735 0.92155 0.93045 0.93899 0.90371 0.91714 0.91698 0.91532 0.92697 0.90776 0.90561 0.88535 0.92715 0.90266 0.89817 0.76067 0.94225 0.94434 0.94915 0.94826 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.81 71.98 0.71 -3.24 16 2 C -0.10 -2.80 4.22 30.60 0.13 -2.67 16 3 C -0.12 -3.00 4.11 30.60 0.13 -2.88 16 4 C 0.17 3.56 2.66 44.98 0.12 3.68 16 5 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 6 C -0.10 -1.65 2.02 -10.71 -0.02 -1.67 16 7 H 0.06 1.25 6.17 -2.39 -0.01 1.23 16 8 C -0.14 -1.77 8.97 71.98 0.65 -1.13 16 9 C -0.11 -1.33 5.17 30.62 0.16 -1.18 16 10 C -0.13 -1.74 6.08 30.67 0.19 -1.56 16 11 C 0.10 1.76 6.43 86.36 0.56 2.32 16 12 N -0.62 -15.07 2.93 -812.88 -2.38 -17.45 16 13 C 0.69 22.84 6.73 179.06 1.20 24.04 16 14 O -0.60 -23.53 9.77 -3.99 -0.04 -23.57 16 15 N -0.74 -24.63 5.45 -478.54 -2.61 -27.24 16 16 C 0.17 7.14 5.62 86.38 0.49 7.62 16 17 C -0.01 -0.47 4.16 29.85 0.12 -0.35 16 18 C -0.54 -31.14 9.66 25.60 0.25 -30.90 16 19 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 20 C 0.00 0.25 5.47 84.65 0.46 0.72 16 21 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16 22 Si 0.96 42.67 27.47 68.60 1.88 44.55 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.03 1.16 7.71 -2.38 -0.02 1.14 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.26 6.58 -2.39 -0.02 1.24 16 30 H 0.04 1.47 5.07 -2.39 -0.01 1.46 16 31 H 0.08 2.58 5.70 -20.86 -0.12 2.46 16 32 H 0.06 1.39 6.86 -2.39 -0.02 1.37 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.76 6.72 -2.39 -0.02 0.75 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 1.33 5.59 -2.39 -0.01 1.32 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.40 10.99 5.98 -92.71 -0.55 10.43 16 43 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 46 H 0.03 1.42 7.57 -2.38 -0.02 1.40 16 47 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -69.97 346.57 2.51 -67.46 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.22 Total: 22.91 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 5.13 Total: -7.18 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -4.68 Total: -104.17 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.04 Total: -23.57 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.55 kcal Total: -69.97 2.51 -67.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612380259.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.776 kcal (2) G-P(sol) polarization free energy of solvation -69.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds