Wall clock time and date at job start Tue Mar 31 2020 06:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47126 * 2 1 4 4 C 1.53006 * 109.47146 * 174.92719 * 3 2 1 5 5 H 1.08998 * 109.58119 * 298.44030 * 4 3 2 6 6 C 1.53188 * 109.58795 * 58.86857 * 4 3 2 7 7 H 1.08999 * 109.50222 * 294.37560 * 6 4 3 8 8 C 1.53002 * 109.49745 * 54.44153 * 6 4 3 9 9 C 1.53042 * 109.31416 * 174.42199 * 6 4 3 10 10 C 1.53036 * 109.53956 * 298.63905 * 9 6 4 11 11 C 1.52766 * 109.38436 * 61.23508 * 10 9 6 12 12 N 1.46924 * 109.58555 * 178.16199 * 4 3 2 13 13 C 1.34773 * 120.63266 * 6.57581 * 12 4 3 14 14 O 1.21591 * 120.00055 * 5.39840 * 13 12 4 15 15 N 1.34779 * 119.99807 * 185.39558 * 13 12 4 16 16 C 1.46502 * 119.99669 * 174.90340 * 15 13 12 17 17 C 1.53000 * 109.47220 * 179.72430 * 16 15 13 18 18 C 1.50694 * 109.47530 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00181 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00454 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99630 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00177 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47186 * 89.99921 * 22 20 18 24 24 H 1.48500 * 109.46856 * 210.00015 * 22 20 18 25 25 H 1.48497 * 109.46978 * 329.99527 * 22 20 18 26 26 H 1.09001 * 109.47130 * 60.00119 * 1 2 3 27 27 H 1.08999 * 109.47048 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47308 * 300.00334 * 1 2 3 29 29 H 1.08998 * 109.47308 * 239.99666 * 2 1 3 30 30 H 1.09001 * 109.47130 * 119.99881 * 2 1 3 31 31 H 1.08994 * 109.47829 * 54.92338 * 3 2 1 32 32 H 1.09005 * 109.46926 * 294.91925 * 3 2 1 33 33 H 1.09000 * 109.47279 * 59.99898 * 8 6 4 34 34 H 1.09001 * 109.46963 * 180.02562 * 8 6 4 35 35 H 1.09008 * 109.46975 * 299.99870 * 8 6 4 36 36 H 1.09001 * 109.45211 * 58.65669 * 9 6 4 37 37 H 1.08995 * 109.46122 * 178.61610 * 9 6 4 38 38 H 1.08995 * 109.49832 * 181.31661 * 10 9 6 39 39 H 1.09006 * 109.49512 * 301.37973 * 10 9 6 40 40 H 1.09003 * 109.50910 * 185.70882 * 11 10 9 41 41 H 1.08999 * 109.42966 * 65.42526 * 11 10 9 42 42 H 0.96999 * 120.00126 * 354.62692 * 15 13 12 43 43 H 1.08999 * 109.47302 * 299.72651 * 16 15 13 44 44 H 1.08993 * 109.47256 * 59.72541 * 16 15 13 45 45 H 1.08999 * 109.47163 * 300.00306 * 17 16 15 46 46 H 1.09010 * 109.47070 * 59.99624 * 17 16 15 47 47 H 0.97009 * 120.00078 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5647 1.4444 0.1276 5 1 3.8529 0.9826 1.0719 6 6 4.1786 0.6628 -1.0382 7 1 3.8950 -0.3869 -0.9619 8 6 3.6674 1.2349 -2.3620 9 6 5.7031 0.7853 -0.9828 10 6 6.1038 2.2557 -1.1228 11 6 5.5115 3.0552 0.0364 12 7 4.0609 2.8266 0.0836 13 6 3.2017 3.8649 0.0810 14 8 2.0093 3.6676 0.2140 15 7 3.6642 5.1219 -0.0691 16 6 2.7239 6.2395 -0.1841 17 6 3.5027 7.5475 -0.3373 18 6 2.5355 8.6970 -0.4562 19 1 1.4717 8.5132 -0.4251 20 6 3.0086 9.9835 -0.6046 21 7 4.3040 10.2075 -0.6420 22 14 1.8097 11.4085 -0.7513 23 1 1.5063 11.9414 0.6011 24 1 2.4146 12.4808 -1.5816 25 1 0.5552 10.9361 -1.3902 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6044 1.9820 0.8409 32 1 1.7528 1.9294 -0.9320 33 1 3.9523 2.2842 -2.4384 34 1 4.1041 0.6781 -3.1911 35 1 2.5813 1.1495 -2.3995 36 1 6.0638 0.3999 -0.0291 37 1 6.1435 0.2098 -1.7969 38 1 7.1903 2.3397 -1.1067 39 1 5.7224 2.6484 -2.0654 40 1 5.7094 4.1164 -0.1148 41 1 5.9639 2.7266 0.9720 42 1 4.6196 5.2871 -0.0969 43 1 2.0879 6.0909 -1.0567 44 1 2.1055 6.2877 0.7122 45 1 4.1387 7.6961 0.5353 46 1 4.1212 7.4993 -1.2336 47 1 4.6369 11.1126 -0.7468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612380260.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:33 Heat of formation + Delta-G solvation = -41.284208 kcal Electronic energy + Delta-G solvation = -23563.352428 eV Core-core repulsion = 20359.728095 eV Total energy + Delta-G solvation = -3203.624333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -40.73190 -37.94886 -35.55676 -34.49745 -33.33914 -32.64583 -31.41089 -29.55070 -27.60401 -26.47199 -24.93142 -23.97889 -22.74826 -21.14905 -20.88346 -20.03737 -18.68831 -17.47597 -16.42817 -16.02963 -15.51090 -15.36332 -14.65696 -14.49066 -14.40782 -14.13399 -13.89910 -13.61054 -13.51234 -13.14368 -12.83062 -12.61873 -12.26107 -12.12134 -11.95700 -11.74607 -11.38342 -11.18559 -11.11887 -11.03282 -11.02056 -10.96030 -10.62890 -10.55846 -10.43822 -10.29828 -10.17211 -9.59867 -9.30578 -8.78505 -8.55319 -8.41632 -8.09798 -6.07564 -4.09981 2.96657 3.30830 3.36878 3.41439 3.62915 4.23934 4.44704 4.63491 4.67712 4.72538 4.91511 5.04068 5.12261 5.14066 5.28284 5.29632 5.33720 5.40130 5.55792 5.59217 5.66923 5.69469 5.75142 5.80887 5.89752 5.94141 5.97140 6.02748 6.06705 6.08494 6.22890 6.32153 6.35270 6.43769 6.54240 6.62635 6.81233 6.93926 7.12542 7.27946 7.58737 7.65806 7.91864 8.28558 8.45261 8.95319 9.08605 9.54701 11.04144 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021509 B = 0.003785 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.452267 B = 7396.222947 C = 8311.757365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C -0.112 4.112 4 C 0.171 3.829 5 H 0.063 0.937 6 C -0.104 4.104 7 H 0.079 0.921 8 C -0.147 4.147 9 C -0.113 4.113 10 C -0.138 4.138 11 C 0.112 3.888 12 N -0.630 5.630 13 C 0.702 3.298 14 O -0.587 6.587 15 N -0.742 5.742 16 C 0.140 3.860 17 C 0.013 3.987 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.390 0.610 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.500 -21.481 -0.234 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.149 4.149 4 C 0.067 3.933 5 H 0.081 0.919 6 C -0.124 4.124 7 H 0.097 0.903 8 C -0.204 4.204 9 C -0.151 4.151 10 C -0.177 4.177 11 C -0.012 4.012 12 N -0.368 5.368 13 C 0.404 3.596 14 O -0.467 6.467 15 N -0.398 5.398 16 C 0.018 3.982 17 C -0.024 4.024 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.226 0.774 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.731 -21.428 -0.172 21.602 hybrid contribution 0.133 0.963 -0.133 0.981 sum 2.864 -20.465 -0.305 20.667 Atomic orbital electron populations 1.21700 0.95989 1.00684 1.02110 1.21739 0.96047 0.98140 1.01040 1.22227 0.92368 0.94448 1.05856 1.21080 0.95223 0.80219 0.96761 0.91923 1.21572 0.95139 0.99714 0.95950 0.90290 1.21883 1.01306 1.01428 0.95760 1.21533 0.95475 0.96318 1.01744 1.21898 1.00498 0.95833 0.99446 1.21501 0.80790 1.00416 0.98504 1.47294 1.05266 1.05212 1.79045 1.16034 0.84967 0.80669 0.77943 1.90893 1.14418 1.83387 1.57967 1.45827 1.10628 1.05661 1.77640 1.21550 0.91554 0.84811 1.00324 1.19314 0.95932 0.89613 0.97567 1.21054 0.93122 0.91264 1.50390 0.92247 1.24990 0.95211 0.99001 0.95079 1.69959 1.12188 1.21113 1.50133 0.86517 0.81158 0.81813 0.78106 1.20570 1.21199 1.19720 0.92829 0.93435 0.92726 0.92535 0.92745 0.88604 0.90631 0.92173 0.93258 0.92211 0.91994 0.91903 0.90929 0.90953 0.90170 0.91703 0.77434 0.92989 0.92808 0.96076 0.96095 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 2 C -0.13 -1.39 5.36 -26.73 -0.14 -1.53 16 3 C -0.11 -1.50 2.64 -26.73 -0.07 -1.57 16 4 C 0.17 2.05 2.74 -67.60 -0.19 1.86 16 5 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 6 C -0.10 -1.02 2.25 -90.50 -0.20 -1.22 16 7 H 0.08 0.68 6.86 -51.93 -0.36 0.33 16 8 C -0.15 -1.59 8.19 37.16 0.30 -1.29 16 9 C -0.11 -0.96 5.43 -26.69 -0.14 -1.10 16 10 C -0.14 -1.27 5.72 -26.83 -0.15 -1.42 16 11 C 0.11 1.21 6.40 -3.93 -0.03 1.18 16 12 N -0.63 -8.57 2.42 -171.17 -0.41 -8.98 16 13 C 0.70 12.41 8.14 -86.92 -0.71 11.70 16 14 O -0.59 -11.99 11.90 5.29 0.06 -11.93 16 15 N -0.74 -13.50 5.47 -65.23 -0.36 -13.86 16 16 C 0.14 3.06 5.62 -4.04 -0.02 3.04 16 17 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 18 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 19 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 22 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.54 6.64 -51.93 -0.34 0.20 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.10 1.58 6.24 -51.93 -0.32 1.25 16 32 H 0.08 1.19 5.52 -51.93 -0.29 0.90 16 33 H 0.06 0.77 5.97 -51.93 -0.31 0.46 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.70 6.16 -51.92 -0.32 0.38 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.75 6.34 -51.93 -0.33 0.42 16 40 H 0.08 0.88 5.57 -51.93 -0.29 0.59 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.39 6.31 5.93 -40.82 -0.24 6.07 16 43 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 47 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -30.52 351.26 -9.50 -40.02 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -8.26 Total: 3.13 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -1.54 Total: -4.64 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.03 Total: -48.36 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.06 Total: -11.93 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.52 -9.50 -40.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612380260.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.266 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds