Wall clock time and date at job start Tue Mar 31 2020 05:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47116 * 2 1 4 4 C 1.53005 * 109.47022 * 60.00529 * 3 2 1 5 5 C 1.53001 * 109.47345 * 300.00183 * 3 2 1 6 6 N 1.46502 * 109.46929 * 180.02562 * 3 2 1 7 7 C 1.46495 * 119.99879 * 359.97438 * 6 3 2 8 8 C 1.34776 * 119.99800 * 180.02562 * 6 3 2 9 9 O 1.21592 * 120.00014 * 348.95405 * 8 6 3 10 10 N 1.34776 * 120.00009 * 168.95575 * 8 6 3 11 11 C 1.46500 * 120.00428 * 174.46172 * 10 8 6 12 12 C 1.50697 * 109.47027 * 270.00083 * 11 10 8 13 13 H 1.08004 * 119.99969 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00575 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99326 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00517 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47138 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47227 * 119.99972 * 16 14 12 19 19 H 1.48510 * 109.47149 * 239.99998 * 16 14 12 20 20 C 1.46498 * 120.00095 * 354.45833 * 10 8 6 21 21 C 1.53004 * 109.47346 * 99.45267 * 20 10 8 22 22 C 1.52998 * 117.50217 * 216.39003 * 21 20 10 23 23 C 1.52998 * 117.49928 * 147.76640 * 21 20 10 24 24 H 1.09002 * 109.47120 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46600 * 299.99430 * 1 2 3 26 26 H 1.09001 * 109.47101 * 59.99738 * 1 2 3 27 27 H 1.08998 * 109.46752 * 240.00063 * 2 1 3 28 28 H 1.09001 * 109.47101 * 120.00262 * 2 1 3 29 29 H 1.09002 * 109.47056 * 179.97438 * 4 3 2 30 30 H 1.09007 * 109.46901 * 299.99766 * 4 3 2 31 31 H 1.09001 * 109.47400 * 59.99612 * 4 3 2 32 32 H 1.08995 * 109.47047 * 299.99767 * 5 3 2 33 33 H 1.09000 * 109.47045 * 60.00357 * 5 3 2 34 34 H 1.08997 * 109.46856 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47287 * 276.09628 * 7 6 3 36 36 H 1.09002 * 109.47402 * 36.10417 * 7 6 3 37 37 H 1.09007 * 109.46809 * 156.09782 * 7 6 3 38 38 H 1.09001 * 109.47097 * 29.99637 * 11 10 8 39 39 H 1.08994 * 109.47886 * 149.99624 * 11 10 8 40 40 H 0.96995 * 119.99772 * 180.02562 * 15 14 12 41 41 H 1.09003 * 109.47599 * 219.45880 * 20 10 8 42 42 H 1.09005 * 109.47025 * 339.46012 * 20 10 8 43 43 H 1.09001 * 115.54528 * 2.10347 * 21 20 10 44 44 H 1.09002 * 117.49900 * 0.02562 * 22 21 20 45 45 H 1.08996 * 117.49943 * 145.01823 * 22 21 20 46 46 H 1.08996 * 117.50061 * 214.98662 * 23 21 20 47 47 H 1.09003 * 117.49950 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 1.2494 5 6 1.5300 2.1638 -1.2492 6 7 3.5051 1.4424 -0.0006 7 6 4.2375 0.1737 -0.0005 8 6 4.1790 2.6096 -0.0002 9 8 3.5878 3.6530 -0.2011 10 7 5.5081 2.6203 0.2228 11 6 6.2609 3.8714 0.1037 12 6 6.7519 4.0293 -1.3123 13 1 6.5262 3.2730 -2.0496 14 6 7.4894 5.1391 -1.6666 15 7 7.7638 6.0602 -0.7689 16 14 8.0974 5.3351 -3.4219 17 1 7.6575 4.1702 -4.2312 18 1 7.5380 6.5818 -4.0033 19 1 9.5806 5.4087 -3.4267 20 6 6.2001 1.3808 0.5845 21 6 6.8795 0.7955 -0.6552 22 6 6.9030 -0.7279 -0.7951 23 6 8.1870 0.0283 -0.4484 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8939 3.1912 1.2496 30 1 0.4401 2.1637 1.2494 31 1 1.8935 1.6498 2.1393 32 1 1.8934 1.6500 -2.1392 33 1 0.4400 2.1638 -1.2491 34 1 1.8930 3.1915 -1.2489 35 1 4.3251 -0.1953 1.0214 36 1 3.6998 -0.5563 -0.6057 37 1 5.2327 0.3287 -0.4174 38 1 5.6139 4.7105 0.3595 39 1 7.1127 3.8492 0.7833 40 1 8.2822 6.8411 -1.0182 41 1 6.9519 1.5928 1.3449 42 1 5.4792 0.6632 0.9765 43 1 6.7800 1.3836 -1.5675 44 1 6.4340 -1.3132 -0.0041 45 1 6.8187 -1.1424 -1.7996 46 1 8.9475 0.1114 -1.2247 47 1 8.5630 -0.0598 0.5710 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619592079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:41 Heat of formation + Delta-G solvation = 62.549210 kcal Electronic energy + Delta-G solvation = -24551.504343 eV Core-core repulsion = 21352.382565 eV Total energy + Delta-G solvation = -3199.121778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.57407 -37.98642 -36.83401 -34.35424 -33.47853 -32.11112 -29.95820 -27.89962 -27.12955 -26.96191 -24.87825 -24.36564 -22.64947 -22.05765 -20.52815 -19.54490 -18.22490 -16.56931 -16.38272 -16.04090 -15.47569 -14.93509 -14.80774 -14.50423 -14.30282 -13.84452 -13.52065 -13.34660 -12.94320 -12.69366 -12.59452 -12.33818 -12.11126 -11.93988 -11.52151 -11.44796 -11.34164 -11.25200 -11.15443 -11.00722 -10.90747 -10.65422 -10.58979 -10.48107 -10.31384 -9.90216 -9.81261 -9.51032 -9.43569 -8.77033 -8.36283 -8.11326 -7.44522 -5.97241 -4.00559 3.30291 3.32289 3.40116 3.43915 3.97540 4.03829 4.38803 4.52054 4.83024 4.95315 5.03517 5.07867 5.20429 5.28216 5.36684 5.39106 5.44944 5.50599 5.59371 5.63199 5.74092 5.78310 5.87101 5.92286 5.95245 5.97960 6.02906 6.04451 6.12460 6.13139 6.20071 6.23734 6.30484 6.32969 6.56621 6.71603 6.79774 6.98508 7.27429 7.48109 7.69224 7.83036 8.03876 8.32871 8.83264 9.00096 9.48738 9.66128 11.10637 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016474 B = 0.006050 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.239909 B = 4627.250995 C = 5540.952883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.193 3.807 4 C -0.161 4.161 5 C -0.166 4.166 6 N -0.634 5.634 7 C 0.027 3.973 8 C 0.708 3.292 9 O -0.580 6.580 10 N -0.610 5.610 11 C 0.261 3.739 12 C -0.516 4.516 13 H 0.056 0.944 14 C 0.060 3.940 15 N -0.895 5.895 16 Si 0.893 3.107 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.103 3.897 21 C -0.162 4.162 22 C -0.194 4.194 23 C -0.171 4.171 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.131 0.869 38 H 0.044 0.956 39 H 0.030 0.970 40 H 0.261 0.739 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.123 0.877 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.095 -16.050 3.173 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C 0.108 3.892 4 C -0.219 4.219 5 C -0.224 4.224 6 N -0.373 5.373 7 C -0.115 4.115 8 C 0.412 3.588 9 O -0.458 6.458 10 N -0.344 5.344 11 C 0.142 3.858 12 C -0.555 4.555 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.535 5.535 16 Si 0.722 3.278 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.020 4.020 21 C -0.181 4.181 22 C -0.231 4.231 23 C -0.208 4.208 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.148 0.852 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.125 0.875 43 H 0.141 0.859 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.302 -15.249 3.100 17.637 hybrid contribution 0.609 0.010 -1.043 1.208 sum -7.693 -15.238 2.057 17.194 Atomic orbital electron populations 1.21877 0.95154 1.01445 1.02471 1.21824 0.96311 0.95797 1.02057 1.20069 0.78822 0.94542 0.95771 1.22242 1.00476 1.02617 0.96543 1.22363 0.99787 1.03989 0.96253 1.47166 1.05129 1.04900 1.80140 1.23481 1.01529 0.86708 0.99750 1.15907 0.81838 0.83097 0.77995 1.90789 1.67369 1.31105 1.56491 1.47471 1.05378 1.10409 1.71140 1.19169 0.90398 0.79591 0.96666 1.21501 1.32656 1.05788 0.95582 0.92539 1.24911 0.96316 0.95650 0.97242 1.69943 1.39712 1.10356 1.33485 0.86519 0.78217 0.78088 0.85021 1.19970 1.20985 1.21097 1.22267 0.97103 0.88437 0.94238 1.23089 0.99958 0.92514 1.02580 1.23157 1.02787 0.94595 1.02552 1.22957 0.91355 1.04088 1.02444 0.92848 0.92236 0.92122 0.91476 0.91762 0.90608 0.92095 0.93307 0.93355 0.92698 0.89088 0.93844 0.92739 0.85180 0.93793 0.95223 0.92928 0.91700 0.87494 0.85886 0.88893 0.89042 0.89000 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.21 37.16 0.34 -1.07 16 2 C -0.12 -1.36 3.83 -26.73 -0.10 -1.46 16 3 C 0.19 2.85 0.82 -131.82 -0.11 2.74 16 4 C -0.16 -2.35 8.05 37.16 0.30 -2.05 16 5 C -0.17 -2.62 8.04 37.16 0.30 -2.32 16 6 N -0.63 -10.74 2.82 -201.80 -0.57 -11.31 16 7 C 0.03 0.36 6.72 59.84 0.40 0.76 16 8 C 0.71 15.46 7.48 -86.92 -0.65 14.81 16 9 O -0.58 -14.79 12.24 5.28 0.06 -14.72 16 10 N -0.61 -13.27 2.46 -188.01 -0.46 -13.74 16 11 C 0.26 6.92 5.22 -5.20 -0.03 6.89 16 12 C -0.52 -14.54 8.79 -34.44 -0.30 -14.85 16 13 H 0.06 1.59 6.40 -52.48 -0.34 1.26 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 16 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 17 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 C 0.10 1.74 5.13 -4.04 -0.02 1.72 16 21 C -0.16 -2.58 4.47 -90.62 -0.41 -2.98 16 22 C -0.19 -2.28 8.71 -26.73 -0.23 -2.52 16 23 C -0.17 -2.29 10.21 -26.73 -0.27 -2.56 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 26 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 27 H 0.07 0.73 6.87 -51.93 -0.36 0.38 16 28 H 0.06 0.67 7.78 -51.93 -0.40 0.27 16 29 H 0.07 1.37 6.56 -51.93 -0.34 1.03 16 30 H 0.06 0.74 6.43 -51.92 -0.33 0.41 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.72 6.43 -51.93 -0.33 0.38 16 34 H 0.09 1.80 5.84 -51.93 -0.30 1.49 16 35 H 0.04 0.51 6.98 -51.93 -0.36 0.14 16 36 H 0.05 0.63 6.04 -51.93 -0.31 0.32 16 37 H 0.13 1.85 1.18 -74.77 -0.09 1.76 16 38 H 0.04 1.32 7.35 -51.93 -0.38 0.94 16 39 H 0.03 0.80 7.99 -51.93 -0.41 0.39 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.06 1.08 7.97 -51.93 -0.41 0.67 16 42 H 0.11 1.52 3.32 -86.72 -0.29 1.24 16 43 H 0.12 2.43 6.25 -51.93 -0.32 2.10 16 44 H 0.09 0.91 7.65 -51.93 -0.40 0.51 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 344.87 15.07 5.20 5.20 Total: -1.00 -32.15 344.87 -8.66 -40.82 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.73 Total: 4.06 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -0.88 Total: -1.27 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.30 Total: -51.12 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.06 Total: -14.72 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.15 -8.66 -40.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619592079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.366 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds