Wall clock time and date at job start Tue Mar 31 2020 05:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47034 * 2 1 4 4 C 1.53004 * 109.47089 * 59.99488 * 3 2 1 5 5 C 1.53003 * 109.47125 * 300.00098 * 3 2 1 6 6 N 1.46490 * 109.47227 * 179.97438 * 3 2 1 7 7 C 1.46504 * 120.00042 * 359.97438 * 6 3 2 8 8 C 1.34776 * 120.00501 * 180.02562 * 6 3 2 9 9 O 1.21589 * 119.99508 * 353.42244 * 8 6 3 10 10 N 1.34771 * 120.00218 * 173.42205 * 8 6 3 11 11 C 1.46924 * 120.63402 * 339.78770 * 10 8 6 12 12 C 1.53187 * 108.89433 * 233.51767 * 11 10 8 13 13 C 1.53072 * 109.29637 * 305.57422 * 12 11 10 14 14 C 1.50706 * 109.44208 * 181.23398 * 13 12 11 15 15 H 1.07995 * 120.00343 * 245.14752 * 14 13 12 16 16 C 1.37880 * 119.99350 * 65.14833 * 14 13 12 17 17 N 1.31507 * 120.00420 * 5.16062 * 16 14 13 18 18 Si 1.86799 * 119.99606 * 185.15529 * 16 14 13 19 19 H 1.48497 * 109.47072 * 85.00044 * 18 16 14 20 20 H 1.48502 * 109.47187 * 205.00114 * 18 16 14 21 21 H 1.48503 * 109.47195 * 325.00429 * 18 16 14 22 22 C 1.53044 * 109.65551 * 61.15683 * 13 12 11 23 23 C 1.46930 * 120.62997 * 159.76692 * 10 8 6 24 24 H 1.08997 * 109.47554 * 300.00358 * 1 2 3 25 25 H 1.08999 * 109.46668 * 60.00378 * 1 2 3 26 26 H 1.08997 * 109.47118 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47154 * 240.00000 * 2 1 3 28 28 H 1.08999 * 109.46668 * 119.99622 * 2 1 3 29 29 H 1.08997 * 109.47060 * 179.97438 * 4 3 2 30 30 H 1.08992 * 109.47603 * 300.00113 * 4 3 2 31 31 H 1.09008 * 109.47047 * 60.00171 * 4 3 2 32 32 H 1.09007 * 109.46574 * 299.99816 * 5 3 2 33 33 H 1.08996 * 109.47263 * 59.99297 * 5 3 2 34 34 H 1.08997 * 109.47069 * 180.02562 * 5 3 2 35 35 H 1.08998 * 109.47237 * 272.41519 * 7 6 3 36 36 H 1.09001 * 109.46996 * 32.41549 * 7 6 3 37 37 H 1.09000 * 109.47073 * 152.41228 * 7 6 3 38 38 H 1.09007 * 109.58300 * 353.37651 * 11 10 8 39 39 H 1.09001 * 109.58648 * 113.65828 * 11 10 8 40 40 H 1.09000 * 109.49791 * 65.39009 * 12 11 10 41 41 H 1.09000 * 109.49828 * 185.48322 * 12 11 10 42 42 H 1.08995 * 109.35226 * 301.13258 * 13 12 11 43 43 H 0.97000 * 120.00264 * 179.97438 * 17 16 14 44 44 H 1.08997 * 109.49892 * 178.74597 * 22 13 12 45 45 H 1.08998 * 109.52232 * 58.66487 * 22 13 12 46 46 H 1.08998 * 109.58824 * 246.20228 * 23 10 8 47 47 H 1.09000 * 109.58348 * 6.48809 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5300 2.1638 -1.2493 6 7 3.5050 1.4426 0.0006 7 6 4.2375 0.1738 0.0017 8 6 4.1789 2.6097 0.0012 9 8 3.5770 3.6593 -0.1193 10 7 5.5199 2.6135 0.1355 11 6 6.2179 1.4561 0.7116 12 6 7.0999 1.9344 1.8692 13 6 8.0261 3.0475 1.3729 14 6 8.9164 3.4997 2.5017 15 1 8.8280 4.5034 2.8903 16 6 9.8438 2.6318 3.0381 17 7 10.0224 1.4452 2.5000 18 14 10.8468 3.1416 4.5293 19 1 10.0754 2.8563 5.7657 20 1 12.1206 2.3787 4.5535 21 1 11.1416 4.5951 4.4542 22 6 7.1904 4.2301 0.8777 23 6 6.3118 3.7750 -0.2919 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8936 3.1913 1.2494 30 1 0.4400 2.1638 1.2492 31 1 1.8932 1.6500 2.1393 32 1 1.8934 1.6499 -2.1392 33 1 0.4401 2.1637 -1.2493 34 1 1.8937 3.1913 -1.2495 35 1 4.3813 -0.1619 1.0287 36 1 3.6681 -0.5749 -0.5490 37 1 5.2082 0.3143 -0.4739 38 1 5.4878 0.7362 1.0817 39 1 6.8391 0.9871 -0.0515 40 1 6.4701 2.3184 2.6717 41 1 7.6958 1.1009 2.2410 42 1 8.6398 2.6690 0.5555 43 1 10.6751 0.8348 2.8772 44 1 7.8524 5.0298 0.5457 45 1 6.5582 4.5939 1.6877 46 1 6.9425 3.4966 -1.1361 47 1 5.6436 4.5844 -0.5861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619594500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:27 Heat of formation + Delta-G solvation = -1.498681 kcal Electronic energy + Delta-G solvation = -24216.977608 eV Core-core repulsion = 21015.078505 eV Total energy + Delta-G solvation = -3201.899103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.64080 -37.95180 -36.38805 -34.38050 -33.01283 -30.99894 -30.28558 -29.71657 -27.21982 -27.09382 -25.51549 -24.59857 -22.71787 -22.13775 -20.42066 -19.05416 -18.31732 -16.79306 -16.33577 -15.98935 -15.69896 -15.01620 -14.80237 -14.47822 -14.07299 -13.63854 -13.38955 -13.26978 -12.95325 -12.78877 -12.71600 -12.35740 -12.30466 -12.15687 -11.93724 -11.69287 -11.57690 -11.36169 -11.20975 -10.94126 -10.85333 -10.71353 -10.65871 -10.48909 -10.29282 -10.12995 -9.55305 -9.35084 -9.03788 -8.83303 -8.44838 -8.32144 -7.75998 -6.02280 -4.05057 2.91371 3.30271 3.36664 3.40139 3.50979 4.11845 4.43689 4.63961 4.79628 5.00624 5.09370 5.22500 5.28849 5.29857 5.42259 5.46101 5.64881 5.71836 5.76122 5.77716 5.81175 5.85554 5.87977 5.92548 5.99775 6.02716 6.06243 6.08550 6.22045 6.38020 6.39230 6.49807 6.56102 6.70548 6.80563 7.00041 7.06765 7.19311 7.25580 7.47086 7.69858 7.94817 8.00612 8.35137 8.44092 8.98307 8.99358 9.59031 11.05787 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030146 B = 0.004144 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.599910 B = 6754.424740 C = 7085.881948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.192 3.808 4 C -0.163 4.163 5 C -0.164 4.164 6 N -0.628 5.628 7 C 0.065 3.935 8 C 0.713 3.287 9 O -0.594 6.594 10 N -0.623 5.623 11 C 0.078 3.922 12 C -0.118 4.118 13 C 0.048 3.952 14 C -0.512 4.512 15 H 0.054 0.946 16 C 0.063 3.937 17 N -0.892 5.892 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.122 4.122 23 C 0.132 3.868 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.038 0.962 41 H 0.087 0.913 42 H 0.031 0.969 43 H 0.259 0.741 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.458 -5.494 -6.251 17.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C 0.108 3.892 4 C -0.221 4.221 5 C -0.222 4.222 6 N -0.366 5.366 7 C -0.077 4.077 8 C 0.416 3.584 9 O -0.473 6.473 10 N -0.360 5.360 11 C -0.043 4.043 12 C -0.156 4.156 13 C 0.030 3.970 14 C -0.550 4.550 15 H 0.072 0.928 16 C -0.138 4.138 17 N -0.530 5.530 18 Si 0.716 3.284 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.160 4.160 23 C 0.009 3.991 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.105 0.895 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.650 -5.081 -6.303 17.620 hybrid contribution 0.827 -0.004 0.988 1.288 sum -14.823 -5.085 -5.315 16.548 Atomic orbital electron populations 1.21876 0.94919 1.01715 1.02454 1.21860 0.96554 0.95440 1.02388 1.20140 0.78100 0.95027 0.95972 1.22260 1.00636 1.02688 0.96540 1.22326 1.00346 1.03312 0.96221 1.47201 1.05580 1.04959 1.78890 1.22478 0.98070 0.86260 1.00941 1.15870 0.81636 0.83368 0.77509 1.90769 1.67446 1.30646 1.58452 1.47287 1.04002 1.19320 1.65369 1.22917 0.96356 0.88052 0.96982 1.21952 0.96692 1.02035 0.94961 1.18629 0.91978 0.90208 0.96189 1.21203 1.17851 0.98538 1.17441 0.92811 1.24946 0.96711 0.95185 0.97005 1.69913 1.35172 1.07735 1.40228 0.86680 0.79518 0.78647 0.83576 1.20693 1.21341 1.20017 1.21987 0.97604 1.00121 0.96330 1.21536 0.93315 0.87112 0.97099 0.92140 0.92174 0.92611 0.91317 0.91363 0.90478 0.91911 0.92970 0.93251 0.92204 0.89659 0.92313 0.91745 0.89522 0.88962 0.92508 0.94358 0.89506 0.95080 0.93076 0.92304 0.93027 0.92788 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.21 37.16 0.34 -0.85 16 2 C -0.12 -1.17 3.79 -26.73 -0.10 -1.28 16 3 C 0.19 2.40 0.82 -131.82 -0.11 2.29 16 4 C -0.16 -2.12 8.05 37.16 0.30 -1.83 16 5 C -0.16 -2.05 8.05 37.16 0.30 -1.75 16 6 N -0.63 -9.13 2.82 -179.71 -0.51 -9.64 16 7 C 0.06 0.77 7.68 59.85 0.46 1.23 16 8 C 0.71 12.94 7.37 -86.92 -0.64 12.30 16 9 O -0.59 -12.14 12.18 5.29 0.06 -12.08 16 10 N -0.62 -11.52 2.90 -178.50 -0.52 -12.04 16 11 C 0.08 1.40 4.38 -3.71 -0.02 1.38 16 12 C -0.12 -2.62 5.21 -26.60 -0.14 -2.76 16 13 C 0.05 1.17 1.93 -91.71 -0.18 1.00 16 14 C -0.51 -13.88 8.49 -34.44 -0.29 -14.18 16 15 H 0.05 1.47 7.75 -52.49 -0.41 1.06 16 16 C 0.06 1.70 5.26 -17.82 -0.09 1.61 16 17 N -0.89 -24.76 11.93 55.43 0.66 -24.10 16 18 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.12 -2.59 5.31 -26.61 -0.14 -2.73 16 23 C 0.13 2.49 6.43 -3.71 -0.02 2.47 16 24 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 25 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.61 6.87 -51.93 -0.36 0.25 16 28 H 0.07 0.63 7.78 -51.93 -0.40 0.23 16 29 H 0.08 1.24 6.39 -51.93 -0.33 0.91 16 30 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 31 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.62 6.43 -51.93 -0.33 0.28 16 34 H 0.08 1.33 5.96 -51.93 -0.31 1.02 16 35 H 0.06 0.68 6.70 -51.93 -0.35 0.33 16 36 H 0.06 0.61 5.87 -51.93 -0.30 0.31 16 37 H 0.09 1.10 5.05 -51.93 -0.26 0.84 16 38 H 0.09 1.44 3.50 -61.11 -0.21 1.22 16 39 H 0.06 0.99 7.59 -51.93 -0.39 0.60 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 2.12 6.68 -51.93 -0.35 1.77 16 42 H 0.03 0.82 8.12 -51.93 -0.42 0.39 16 43 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.08 1.42 7.11 -51.93 -0.37 1.05 16 LS Contribution 339.06 15.07 5.11 5.11 Total: -1.00 -29.72 339.06 -8.44 -38.16 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.90 Total: 1.60 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -0.33 Total: -3.09 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.36 Total: -45.78 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.06 Total: -12.08 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.72 -8.44 -38.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619594500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.666 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds