Wall clock time and date at job start Tue Mar 31 2020 05:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.52994 * 109.47404 * 294.99916 * 4 2 1 6 6 H 1.09005 * 115.55089 * 29.33196 * 5 4 2 7 7 C 1.53001 * 117.50169 * 243.62357 * 5 4 2 8 8 C 1.52998 * 117.50279 * 174.99812 * 5 4 2 9 9 H 1.09004 * 117.49605 * 359.97438 * 8 5 4 10 10 N 1.46501 * 117.50254 * 214.98293 * 8 5 4 11 11 C 1.34780 * 119.99742 * 155.00092 * 10 8 5 12 12 O 1.21276 * 120.00338 * 0.02562 * 11 10 8 13 13 C 1.50703 * 119.99733 * 180.02562 * 11 10 8 14 14 H 1.09003 * 109.47026 * 39.99812 * 13 11 10 15 15 N 1.46900 * 109.47232 * 159.99774 * 13 11 10 16 16 C 1.53000 * 109.47234 * 279.99972 * 13 11 10 17 17 C 1.52998 * 109.47307 * 175.00033 * 16 13 11 18 18 C 1.52994 * 109.47117 * 180.02562 * 17 16 13 19 19 C 1.50705 * 109.47286 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99559 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00205 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99810 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99830 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47650 * 60.00047 * 23 21 19 25 25 H 1.48504 * 109.47141 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47011 * 299.99497 * 23 21 19 27 27 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 28 28 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 29 29 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 31 31 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 32 32 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 34 34 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 35 35 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 36 36 H 1.08993 * 117.49813 * 359.97438 * 7 5 4 37 37 H 1.09000 * 117.49679 * 145.02584 * 7 5 4 38 38 H 0.96996 * 120.00005 * 335.00110 * 10 8 5 39 39 H 1.00896 * 110.99785 * 296.04521 * 15 13 11 40 40 H 1.00896 * 110.99734 * 60.00152 * 15 13 11 41 41 H 1.08996 * 109.46828 * 294.99962 * 16 13 11 42 42 H 1.09001 * 109.47007 * 54.99806 * 16 13 11 43 43 H 1.09009 * 109.46889 * 299.99814 * 17 16 13 44 44 H 1.08996 * 109.46982 * 59.99566 * 17 16 13 45 45 H 1.09000 * 109.47442 * 299.99651 * 18 17 16 46 46 H 1.08996 * 109.47738 * 59.99797 * 18 17 16 47 47 H 0.96998 * 119.99811 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6352 -2.1954 -1.1881 6 1 0.7159 -2.4083 -0.6424 7 6 2.7568 -3.2335 -1.1156 8 6 1.9516 -3.0660 -2.4057 9 1 2.4477 -2.5884 -3.2507 10 7 0.9961 -4.1223 -2.7488 11 6 0.9174 -4.5741 -4.0162 12 8 1.6379 -4.1067 -4.8725 13 6 -0.0659 -5.6602 -4.3692 14 1 -1.0034 -5.4873 -3.8407 15 7 -0.3106 -5.6473 -5.8176 16 6 0.5067 -7.0190 -3.9608 17 6 -0.5405 -8.1077 -4.2040 18 6 0.0319 -9.4663 -3.7950 19 6 -0.9998 -10.5386 -4.0341 20 1 -1.9671 -10.2770 -4.4370 21 6 -0.7087 -11.8535 -3.7384 22 7 0.4693 -12.1720 -3.2482 23 14 -1.9872 -13.1825 -4.0353 24 1 -2.3474 -13.2101 -5.4757 25 1 -1.4313 -14.5015 -3.6394 26 1 -3.1991 -12.8929 -3.2274 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9562 0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6053 -0.2617 -2.1370 35 1 3.1263 -0.6443 -1.2952 36 1 3.7830 -2.8663 -1.1119 37 1 2.5755 -4.1296 -0.5221 38 1 0.4201 -4.4964 -2.0639 39 1 -0.7487 -4.7843 -6.1026 40 1 0.5440 -5.8056 -6.3301 41 1 1.3962 -7.2315 -4.5537 42 1 0.7710 -6.9989 -2.9035 43 1 -1.4301 -7.8951 -3.6110 44 1 -0.8048 -8.1277 -5.2613 45 1 0.9216 -9.6791 -4.3877 46 1 0.2959 -9.4460 -2.7377 47 1 0.6742 -13.0970 -3.0405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691600167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:22 Heat of formation + Delta-G solvation = -57.032844 kcal Electronic energy + Delta-G solvation = -21692.630392 eV Core-core repulsion = 18488.323148 eV Total energy + Delta-G solvation = -3204.307245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15462 -38.46094 -35.99797 -35.55744 -33.33590 -32.92947 -31.34151 -28.09485 -27.63532 -27.42857 -25.24080 -22.93917 -21.91949 -21.24632 -20.50944 -20.00971 -19.87798 -17.24004 -16.85027 -16.31871 -15.85244 -15.48138 -14.90765 -14.69587 -14.42986 -14.37632 -14.18601 -13.89286 -13.41290 -13.02662 -12.97705 -12.60465 -12.40740 -12.32673 -12.04302 -11.77002 -11.68075 -11.45035 -11.17910 -11.13539 -11.04623 -10.94361 -10.72204 -10.63736 -10.41741 -10.33793 -10.20006 -9.59587 -9.21720 -9.04826 -8.85759 -8.56977 -8.28444 -5.94266 -3.95934 2.48528 2.96050 3.37160 3.41128 3.44092 3.60092 4.28415 4.45573 4.49937 4.52407 4.58259 4.66499 4.72754 4.79807 4.90450 5.01179 5.17959 5.25540 5.33620 5.40648 5.41007 5.41559 5.44346 5.52600 5.55299 5.63690 5.70331 5.77879 5.86910 5.93693 6.00967 6.02685 6.12663 6.35027 6.44881 6.82800 7.01865 7.09397 7.25286 7.38379 7.51958 7.75556 7.91327 8.07257 8.11026 8.50488 9.11496 9.67628 11.17138 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025858 B = 0.002454 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.590525 B =11405.166438 C =11805.578148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.083 4.083 5 C -0.160 4.160 6 H 0.109 0.891 7 C -0.189 4.189 8 C 0.082 3.918 9 H 0.133 0.867 10 N -0.701 5.701 11 C 0.487 3.513 12 O -0.549 6.549 13 C 0.078 3.922 14 H 0.100 0.900 15 N -0.811 5.811 16 C -0.103 4.103 17 C -0.100 4.100 18 C 0.019 3.981 19 C -0.517 4.517 20 H 0.055 0.945 21 C 0.054 3.946 22 N -0.898 5.898 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.404 0.596 39 H 0.338 0.662 40 H 0.350 0.650 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.044 0.956 44 H 0.063 0.937 45 H 0.014 0.986 46 H 0.012 0.988 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.170 25.755 6.592 26.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.121 4.121 5 C -0.179 4.179 6 H 0.127 0.873 7 C -0.227 4.227 8 C -0.025 4.025 9 H 0.151 0.849 10 N -0.351 5.351 11 C 0.273 3.727 12 O -0.426 6.426 13 C -0.037 4.037 14 H 0.118 0.882 15 N -0.339 5.339 16 C -0.142 4.142 17 C -0.138 4.138 18 C -0.018 4.018 19 C -0.555 4.555 20 H 0.073 0.927 21 C -0.146 4.146 22 N -0.537 5.537 23 Si 0.720 3.280 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.203 1.203 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.238 0.762 39 H 0.150 0.850 40 H 0.165 0.835 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.032 0.968 46 H 0.030 0.970 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.302 25.279 6.118 26.111 hybrid contribution -0.180 -0.163 0.377 0.449 sum 2.123 25.116 6.496 26.029 Atomic orbital electron populations 1.21899 0.95222 1.01893 1.01640 1.21079 0.95941 0.95947 0.98327 1.21846 1.00941 0.96021 1.01761 1.21235 1.00677 0.92080 0.98088 1.22942 1.00264 0.92879 1.01833 0.87271 1.23623 0.96988 1.00996 1.01133 1.21713 0.95399 0.92635 0.92710 0.84886 1.45580 1.39883 1.38687 1.10980 1.22599 0.84740 0.83641 0.81760 1.90658 1.44274 1.59360 1.48341 1.21775 0.96747 0.93801 0.91427 0.88163 1.59044 1.31740 1.40785 1.02348 1.21653 1.00271 0.91686 1.00549 1.21539 0.95943 0.94725 1.01548 1.19117 0.96227 0.90105 0.96321 1.21246 1.00144 0.92041 1.42084 0.92708 1.25038 0.95379 0.98793 0.95422 1.69959 1.21001 1.18275 1.44492 0.86666 0.81741 0.80952 0.78677 1.20242 1.21396 1.20301 0.92867 0.92718 0.92432 0.91057 0.92717 0.92718 0.92701 0.91468 0.91587 0.88108 0.88320 0.76161 0.85009 0.83534 0.91892 0.91942 0.93686 0.91808 0.96774 0.96990 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.01 37.16 0.33 -0.59 16 2 C -0.09 -0.58 2.92 -90.62 -0.26 -0.85 16 3 C -0.15 -0.83 9.19 37.16 0.34 -0.49 16 4 C -0.08 -0.57 4.96 -26.74 -0.13 -0.70 16 5 C -0.16 -1.23 5.45 -90.62 -0.49 -1.72 16 6 H 0.11 0.79 6.38 -51.93 -0.33 0.46 16 7 C -0.19 -1.60 10.10 -26.73 -0.27 -1.87 16 8 C 0.08 0.83 6.15 -67.93 -0.42 0.41 16 9 H 0.13 1.55 7.40 -51.93 -0.38 1.17 16 10 N -0.70 -7.62 5.57 -53.80 -0.30 -7.92 16 11 C 0.49 6.65 7.07 -10.98 -0.08 6.57 16 12 O -0.55 -9.18 15.82 5.56 0.09 -9.09 16 13 C 0.08 1.07 3.15 -68.86 -0.22 0.85 16 14 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 15 N -0.81 -11.15 8.44 -5.65 -0.05 -11.20 16 16 C -0.10 -1.71 4.84 -26.73 -0.13 -1.84 16 17 C -0.10 -2.04 5.04 -26.74 -0.13 -2.17 16 18 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 19 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 20 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 21 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 22 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 23 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.36 6.41 -51.93 -0.33 0.03 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.44 7.88 -51.92 -0.41 0.03 16 36 H 0.10 0.78 8.03 -51.93 -0.42 0.37 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.40 3.57 8.83 -40.82 -0.36 3.21 16 39 H 0.34 4.02 9.06 -39.29 -0.36 3.67 16 40 H 0.35 5.03 8.58 -39.29 -0.34 4.69 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.04 0.89 8.14 -51.92 -0.42 0.46 16 44 H 0.06 1.35 7.75 -51.93 -0.40 0.95 16 45 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -32.33 381.75 -9.59 -41.92 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -8.79 Total: 5.94 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -2.01 Total: -15.71 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.39 Total: -45.75 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.33 -9.59 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691600167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.115 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds