Wall clock time and date at job start Tue Mar 31 2020 06:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47146 * 2 1 4 4 C 1.53000 * 109.47113 * 240.00198 * 2 1 3 5 5 H 1.09005 * 109.47088 * 158.90363 * 4 2 1 6 6 N 1.46899 * 109.47414 * 38.90102 * 4 2 1 7 7 C 1.53001 * 109.47257 * 278.90108 * 4 2 1 8 8 C 1.53003 * 109.46859 * 292.99146 * 7 4 2 9 9 C 1.53010 * 109.47054 * 52.98635 * 7 4 2 10 10 C 1.50693 * 109.47566 * 172.99028 * 7 4 2 11 11 O 1.21284 * 119.99839 * 5.46371 * 10 7 4 12 12 N 1.34778 * 120.00228 * 185.46532 * 10 7 4 13 13 C 1.46500 * 119.99855 * 184.92805 * 12 10 7 14 14 C 1.53004 * 109.46991 * 185.00795 * 13 12 10 15 15 C 1.50701 * 115.54868 * 303.49642 * 14 13 12 16 16 H 1.08003 * 120.00156 * 114.18487 * 15 14 13 17 17 C 1.37878 * 120.00061 * 294.17813 * 15 14 13 18 18 N 1.31509 * 120.00026 * 144.59443 * 17 15 14 19 19 Si 1.86799 * 119.99766 * 324.60227 * 17 15 14 20 20 H 1.48500 * 109.47388 * 53.97298 * 19 17 15 21 21 H 1.48510 * 109.46955 * 173.97124 * 19 17 15 22 22 H 1.48494 * 109.47307 * 293.96995 * 19 17 15 23 23 C 1.53002 * 117.49986 * 157.82440 * 14 13 12 24 24 C 1.52999 * 117.49995 * 89.16238 * 14 13 12 25 25 H 1.09007 * 109.46962 * 60.00219 * 1 2 3 26 26 H 1.08994 * 109.47546 * 299.99919 * 1 2 3 27 27 H 1.09007 * 109.47218 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47117 * 120.00246 * 2 1 3 29 29 H 1.08997 * 109.47582 * 164.62351 * 3 2 1 30 30 H 1.08998 * 109.47109 * 284.62779 * 3 2 1 31 31 H 1.09004 * 109.46976 * 44.61981 * 3 2 1 32 32 H 1.00896 * 111.00084 * 300.00082 * 6 4 2 33 33 H 1.00895 * 110.99788 * 63.95259 * 6 4 2 34 34 H 1.09002 * 109.47421 * 79.18570 * 8 7 4 35 35 H 1.08999 * 109.47093 * 199.17778 * 8 7 4 36 36 H 1.08997 * 109.47077 * 319.18125 * 8 7 4 37 37 H 1.08998 * 109.46688 * 48.87302 * 9 7 4 38 38 H 1.08994 * 109.46742 * 168.87178 * 9 7 4 39 39 H 1.08999 * 109.46927 * 288.87669 * 9 7 4 40 40 H 0.97000 * 119.99515 * 4.93012 * 12 10 7 41 41 H 1.08995 * 109.47224 * 305.00779 * 13 12 10 42 42 H 1.09002 * 109.47225 * 65.00961 * 13 12 10 43 43 H 0.97002 * 119.99804 * 180.02562 * 18 17 15 44 44 H 1.09000 * 117.49638 * 359.97438 * 23 14 13 45 45 H 1.08997 * 117.49649 * 145.02361 * 23 14 13 46 46 H 1.08998 * 117.50357 * 214.98040 * 24 14 13 47 47 H 1.08999 * 117.49557 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 3.0651 -0.4123 -1.4541 6 7 1.1871 -0.3785 -2.3951 7 6 1.9996 -2.2330 -1.0176 8 6 3.0186 -2.6114 0.0592 9 6 0.5980 -2.6415 -0.5594 10 6 2.3365 -2.9472 -2.3011 11 8 2.6810 -2.3127 -3.2757 12 7 2.2551 -4.2909 -2.3661 13 6 2.6853 -4.9930 -3.5778 14 6 2.3746 -6.4849 -3.4402 15 6 2.9767 -7.1660 -2.2383 16 1 2.3361 -7.5543 -1.4603 17 6 4.3455 -7.2936 -2.1319 18 7 4.9241 -7.2096 -0.9539 19 14 5.3779 -7.5857 -3.6610 20 1 5.0852 -6.5312 -4.6648 21 1 6.8182 -7.5410 -3.3017 22 1 5.0513 -8.9169 -4.2320 23 6 2.2513 -7.3025 -4.7276 24 6 1.0009 -6.9668 -3.9108 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 0.8899 29 1 3.0953 1.4548 0.2725 30 1 1.9164 1.8715 -0.9943 31 1 1.4714 2.0288 0.7219 32 1 0.2309 -0.6549 -2.2297 33 1 1.2470 0.6058 -2.6089 34 1 2.6069 -2.3882 1.0435 35 1 3.2404 -3.6764 -0.0087 36 1 3.9342 -2.0392 -0.0900 37 1 -0.1444 -2.2012 -1.2250 38 1 0.5098 -3.7276 -0.5844 39 1 0.4304 -2.2866 0.4574 40 1 1.9116 -4.7930 -1.6106 41 1 2.1541 -4.5893 -4.4397 42 1 3.7579 -4.8565 -3.7154 43 1 5.8871 -7.2990 -0.8791 44 1 2.3910 -6.7774 -5.6725 45 1 2.6052 -8.3331 -4.7050 46 1 0.5328 -7.7767 -3.3514 47 1 0.3183 -6.2209 -4.3180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713010955.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:31 Heat of formation + Delta-G solvation = -9.429882 kcal Electronic energy + Delta-G solvation = -24087.160634 eV Core-core repulsion = 20884.917609 eV Total energy + Delta-G solvation = -3202.243025 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16436 -37.85558 -36.63641 -33.71377 -32.72544 -32.27522 -31.21831 -28.52679 -26.71229 -26.22657 -25.19420 -24.95532 -22.33860 -21.51918 -19.58651 -19.25807 -18.19636 -16.83491 -16.09027 -15.80805 -15.53008 -14.91584 -14.80415 -14.55619 -14.06774 -13.95803 -13.54830 -13.35958 -13.05628 -12.85203 -12.51279 -12.30545 -12.26625 -12.08931 -11.91870 -11.82221 -11.66650 -11.13065 -11.11472 -10.99669 -10.77833 -10.77003 -10.54638 -10.46122 -10.26369 -10.17772 -9.63464 -9.41092 -8.88276 -8.66644 -8.23501 -8.12654 -7.92771 -6.34118 -4.11704 3.32861 3.40338 3.46675 3.52261 3.97569 4.43164 4.62903 4.70070 4.80686 4.87983 4.99329 5.11567 5.15144 5.18108 5.25618 5.43577 5.53358 5.64750 5.66378 5.71346 5.76608 5.80035 5.92189 5.96716 5.99392 6.00794 6.07077 6.13385 6.20854 6.22816 6.23469 6.42998 6.46335 6.51720 6.53130 6.70094 6.82304 7.06907 7.13114 7.40872 7.48131 7.66560 7.73493 8.40517 8.55863 8.86032 9.18867 9.46399 10.76480 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024080 B = 0.004844 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.512700 B = 5779.026910 C = 6109.030641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.134 4.134 3 C -0.146 4.146 4 C 0.125 3.875 5 H 0.082 0.918 6 N -0.822 5.822 7 C -0.073 4.073 8 C -0.145 4.145 9 C -0.149 4.149 10 C 0.518 3.482 11 O -0.531 6.531 12 N -0.704 5.704 13 C 0.163 3.837 14 C 0.000 4.000 15 C -0.521 4.521 16 H 0.075 0.925 17 C 0.106 3.894 18 N -0.853 5.853 19 Si 0.850 3.150 20 H -0.263 1.263 21 H -0.295 1.295 22 H -0.274 1.274 23 C -0.202 4.202 24 C -0.181 4.181 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.332 0.668 33 H 0.333 0.667 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.404 0.596 41 H 0.043 0.957 42 H 0.052 0.948 43 H 0.266 0.734 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.016 12.513 3.517 15.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.155 4.155 3 C -0.203 4.203 4 C 0.012 3.988 5 H 0.100 0.900 6 N -0.352 5.352 7 C -0.077 4.077 8 C -0.202 4.202 9 C -0.206 4.206 10 C 0.302 3.698 11 O -0.407 6.407 12 N -0.355 5.355 13 C 0.039 3.961 14 C -0.002 4.002 15 C -0.556 4.556 16 H 0.093 0.907 17 C -0.102 4.102 18 N -0.486 5.486 19 Si 0.676 3.324 20 H -0.187 1.187 21 H -0.221 1.221 22 H -0.199 1.199 23 C -0.240 4.240 24 C -0.218 4.218 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.240 0.760 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.108 12.456 2.509 14.559 hybrid contribution 0.094 0.062 0.244 0.269 sum -7.014 12.518 2.753 14.611 Atomic orbital electron populations 1.22563 0.95659 1.04073 1.01359 1.21985 0.96110 0.96662 1.00721 1.21841 1.00982 0.96062 1.01447 1.21238 0.97920 0.92045 0.87553 0.89963 1.58793 1.13010 1.22749 1.40665 1.20791 0.96988 0.95167 0.94728 1.21942 0.97910 1.03601 0.96792 1.22289 0.95067 1.02152 1.01080 1.20093 0.78241 0.82295 0.89170 1.90652 1.46986 1.66126 1.36972 1.45828 1.64833 1.05784 1.19012 1.20867 0.98358 0.91330 0.85563 1.19526 0.95813 0.90769 0.94063 1.19917 0.91324 1.40917 1.03438 0.90690 1.24779 0.97518 0.92855 0.95052 1.70223 1.10889 1.42467 1.24978 0.87331 0.78735 0.80141 0.86192 1.18718 1.22118 1.19918 1.23049 1.03735 1.01475 0.95755 1.22771 0.91044 1.03040 1.04929 0.93022 0.93041 0.89697 0.90427 0.92665 0.92952 0.92949 0.85272 0.85379 0.91996 0.90444 0.92303 0.91937 0.91796 0.91077 0.76038 0.93839 0.92955 0.92447 0.91168 0.89572 0.89858 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 7.61 37.16 0.28 -1.30 16 2 C -0.13 -1.34 2.29 -90.62 -0.21 -1.54 16 3 C -0.15 -1.33 9.21 37.16 0.34 -0.98 16 4 C 0.13 1.62 1.61 -67.71 -0.11 1.51 16 5 H 0.08 1.23 7.82 -51.93 -0.41 0.82 16 6 N -0.82 -10.77 7.12 -4.67 -0.03 -10.80 16 7 C -0.07 -1.05 0.50 -155.66 -0.08 -1.13 16 8 C -0.14 -2.05 8.15 37.16 0.30 -1.75 16 9 C -0.15 -1.79 6.56 37.16 0.24 -1.55 16 10 C 0.52 9.89 6.20 -10.99 -0.07 9.82 16 11 O -0.53 -11.88 15.03 5.55 0.08 -11.79 16 12 N -0.70 -14.12 5.01 -60.29 -0.30 -14.42 16 13 C 0.16 3.63 5.48 -4.04 -0.02 3.60 16 14 C 0.00 -0.01 1.11 -155.66 -0.17 -0.18 16 15 C -0.52 -13.41 8.49 -34.44 -0.29 -13.70 16 16 H 0.08 2.07 8.06 -52.48 -0.42 1.65 16 17 C 0.11 2.84 5.35 -17.82 -0.10 2.74 16 18 N -0.85 -23.88 13.96 55.43 0.77 -23.11 16 19 Si 0.85 20.86 25.92 -169.99 -4.41 16.46 16 20 H -0.26 -6.41 6.91 56.52 0.39 -6.02 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 23 C -0.20 -4.23 8.24 -26.69 -0.22 -4.45 16 24 C -0.18 -3.57 9.93 -26.69 -0.27 -3.83 16 25 H 0.05 0.44 6.72 -51.93 -0.35 0.09 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.75 3.60 -51.93 -0.19 0.56 16 28 H 0.08 0.78 6.38 -51.93 -0.33 0.45 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.47 7.20 -51.93 -0.37 0.10 16 31 H 0.05 0.43 8.05 -51.93 -0.42 0.01 16 32 H 0.33 3.94 5.36 -39.29 -0.21 3.73 16 33 H 0.33 3.81 8.20 -39.29 -0.32 3.49 16 34 H 0.06 0.72 6.85 -51.93 -0.36 0.36 16 35 H 0.08 1.29 7.66 -51.93 -0.40 0.89 16 36 H 0.06 0.83 7.89 -51.93 -0.41 0.42 16 37 H 0.06 0.71 5.48 -51.93 -0.28 0.43 16 38 H 0.06 0.82 6.87 -51.93 -0.36 0.46 16 39 H 0.07 0.71 5.84 -51.93 -0.30 0.41 16 40 H 0.40 7.91 6.75 -40.82 -0.28 7.63 16 41 H 0.04 0.95 8.06 -51.93 -0.42 0.53 16 42 H 0.05 1.29 7.38 -51.93 -0.38 0.90 16 43 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 45 H 0.09 1.85 7.59 -51.93 -0.39 1.45 16 46 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 47 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 349.65 15.07 5.27 5.27 Total: -1.00 -29.15 349.65 -6.83 -35.98 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -7.86 Total: 15.16 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -0.36 Total: -12.74 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.44 Total: -48.33 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.41 Total: 16.46 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.15 -6.83 -35.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713010955.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.552 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds