Wall clock time and date at job start Tue Mar 31 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47146 * 2 1 4 4 C 1.53000 * 109.47113 * 240.00198 * 2 1 3 5 5 H 1.09005 * 109.47088 * 158.90363 * 4 2 1 6 6 N 1.46899 * 109.47414 * 38.90102 * 4 2 1 7 7 C 1.53001 * 109.47257 * 278.90108 * 4 2 1 8 8 C 1.53003 * 109.46859 * 292.99146 * 7 4 2 9 9 C 1.53010 * 109.47054 * 52.98635 * 7 4 2 10 10 C 1.50693 * 109.47566 * 172.99028 * 7 4 2 11 11 O 1.21284 * 119.99839 * 5.46371 * 10 7 4 12 12 N 1.34778 * 120.00228 * 185.46532 * 10 7 4 13 13 C 1.46500 * 119.99855 * 184.92805 * 12 10 7 14 14 C 1.53004 * 109.46991 * 185.00795 * 13 12 10 15 15 C 1.50701 * 115.54868 * 303.49642 * 14 13 12 16 16 H 1.08003 * 120.00156 * 114.18487 * 15 14 13 17 17 C 1.37878 * 120.00061 * 294.17813 * 15 14 13 18 18 N 1.31509 * 120.00026 * 144.59443 * 17 15 14 19 19 Si 1.86799 * 119.99766 * 324.60227 * 17 15 14 20 20 H 1.48500 * 109.47388 * 53.97298 * 19 17 15 21 21 H 1.48510 * 109.46955 * 173.97124 * 19 17 15 22 22 H 1.48494 * 109.47307 * 293.96995 * 19 17 15 23 23 C 1.53002 * 117.49986 * 157.82440 * 14 13 12 24 24 C 1.52999 * 117.49995 * 89.16238 * 14 13 12 25 25 H 1.09007 * 109.46962 * 60.00219 * 1 2 3 26 26 H 1.08994 * 109.47546 * 299.99919 * 1 2 3 27 27 H 1.09007 * 109.47218 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47117 * 120.00246 * 2 1 3 29 29 H 1.08997 * 109.47582 * 164.62351 * 3 2 1 30 30 H 1.08998 * 109.47109 * 284.62779 * 3 2 1 31 31 H 1.09004 * 109.46976 * 44.61981 * 3 2 1 32 32 H 1.00896 * 111.00084 * 300.00082 * 6 4 2 33 33 H 1.00895 * 110.99788 * 63.95259 * 6 4 2 34 34 H 1.09002 * 109.47421 * 79.18570 * 8 7 4 35 35 H 1.08999 * 109.47093 * 199.17778 * 8 7 4 36 36 H 1.08997 * 109.47077 * 319.18125 * 8 7 4 37 37 H 1.08998 * 109.46688 * 48.87302 * 9 7 4 38 38 H 1.08994 * 109.46742 * 168.87178 * 9 7 4 39 39 H 1.08999 * 109.46927 * 288.87669 * 9 7 4 40 40 H 0.97000 * 119.99515 * 4.93012 * 12 10 7 41 41 H 1.08995 * 109.47224 * 305.00779 * 13 12 10 42 42 H 1.09002 * 109.47225 * 65.00961 * 13 12 10 43 43 H 0.97002 * 119.99804 * 180.02562 * 18 17 15 44 44 H 1.09000 * 117.49638 * 359.97438 * 23 14 13 45 45 H 1.08997 * 117.49649 * 145.02361 * 23 14 13 46 46 H 1.08998 * 117.50357 * 214.98040 * 24 14 13 47 47 H 1.08999 * 117.49557 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 3.0651 -0.4123 -1.4541 6 7 1.1871 -0.3785 -2.3951 7 6 1.9996 -2.2330 -1.0176 8 6 3.0186 -2.6114 0.0592 9 6 0.5980 -2.6415 -0.5594 10 6 2.3365 -2.9472 -2.3011 11 8 2.6810 -2.3127 -3.2757 12 7 2.2551 -4.2909 -2.3661 13 6 2.6853 -4.9930 -3.5778 14 6 2.3746 -6.4849 -3.4402 15 6 2.9767 -7.1660 -2.2383 16 1 2.3361 -7.5543 -1.4603 17 6 4.3455 -7.2936 -2.1319 18 7 4.9241 -7.2096 -0.9539 19 14 5.3779 -7.5857 -3.6610 20 1 5.0852 -6.5312 -4.6648 21 1 6.8182 -7.5410 -3.3017 22 1 5.0513 -8.9169 -4.2320 23 6 2.2513 -7.3025 -4.7276 24 6 1.0009 -6.9668 -3.9108 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 0.8899 29 1 3.0953 1.4548 0.2725 30 1 1.9164 1.8715 -0.9943 31 1 1.4714 2.0288 0.7219 32 1 0.2309 -0.6549 -2.2297 33 1 1.2470 0.6058 -2.6089 34 1 2.6069 -2.3882 1.0435 35 1 3.2404 -3.6764 -0.0087 36 1 3.9342 -2.0392 -0.0900 37 1 -0.1444 -2.2012 -1.2250 38 1 0.5098 -3.7276 -0.5844 39 1 0.4304 -2.2866 0.4574 40 1 1.9116 -4.7930 -1.6106 41 1 2.1541 -4.5893 -4.4397 42 1 3.7579 -4.8565 -3.7154 43 1 5.8871 -7.2990 -0.8791 44 1 2.3910 -6.7774 -5.6725 45 1 2.6052 -8.3331 -4.7050 46 1 0.5328 -7.7767 -3.3514 47 1 0.3183 -6.2209 -4.3180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713010955.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:30 Heat of formation + Delta-G solvation = -28.842960 kcal Electronic energy + Delta-G solvation = -24088.002448 eV Core-core repulsion = 20884.917609 eV Total energy + Delta-G solvation = -3203.084840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.43341 -39.27589 -38.23175 -35.10931 -34.33430 -34.03819 -32.19429 -29.40942 -28.41012 -27.32350 -26.94590 -25.99033 -23.62694 -23.13997 -21.13190 -20.67427 -19.50799 -18.47448 -17.56234 -17.11563 -16.85695 -16.53177 -15.99966 -15.86979 -15.61591 -15.22068 -14.89954 -14.71466 -14.42892 -14.22409 -14.19284 -13.82600 -13.25193 -13.13292 -13.08191 -12.98049 -12.91653 -12.85351 -12.69706 -12.17029 -12.15143 -12.10072 -11.88577 -11.62013 -11.56507 -11.52504 -11.21753 -11.14488 -10.52180 -10.36314 -10.07958 -9.65709 -9.21902 -8.42872 -6.19769 1.35250 1.40266 1.46471 1.99898 2.39452 2.47461 2.87926 3.36954 3.59523 3.75014 3.91269 4.08985 4.10440 4.15815 4.16737 4.22469 4.36916 4.49751 4.50045 4.65803 4.69828 4.73032 4.76828 4.85030 4.88914 4.90469 4.92501 4.96676 5.01892 5.08558 5.09675 5.11324 5.25565 5.30663 5.33325 5.37811 5.48903 5.50322 5.51011 5.70987 5.83535 6.35977 6.46418 6.74872 6.77091 6.99527 7.38356 7.62345 8.70553 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024080 B = 0.004844 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.512700 B = 5779.026910 C = 6109.030641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.126 4.126 3 C -0.145 4.145 4 C 0.131 3.869 5 H 0.056 0.944 6 N -0.838 5.838 7 C -0.067 4.067 8 C -0.141 4.141 9 C -0.145 4.145 10 C 0.512 3.488 11 O -0.566 6.566 12 N -0.704 5.704 13 C 0.171 3.829 14 C -0.025 4.025 15 C -0.511 4.511 16 H 0.049 0.951 17 C 0.066 3.934 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.261 1.261 21 H -0.299 1.299 22 H -0.264 1.264 23 C -0.199 4.199 24 C -0.155 4.155 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.340 0.660 33 H 0.342 0.658 34 H 0.093 0.907 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.098 0.902 40 H 0.406 0.594 41 H 0.048 0.952 42 H 0.020 0.980 43 H 0.265 0.735 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.787 13.449 3.579 17.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.146 4.146 3 C -0.202 4.202 4 C 0.018 3.982 5 H 0.075 0.925 6 N -0.370 5.370 7 C -0.070 4.070 8 C -0.199 4.199 9 C -0.202 4.202 10 C 0.299 3.701 11 O -0.445 6.445 12 N -0.355 5.355 13 C 0.046 3.954 14 C -0.027 4.027 15 C -0.547 4.547 16 H 0.067 0.933 17 C -0.138 4.138 18 N -0.524 5.524 19 Si 0.718 3.282 20 H -0.186 1.186 21 H -0.226 1.226 22 H -0.189 1.189 23 C -0.237 4.237 24 C -0.192 4.192 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.112 0.888 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.242 0.758 41 H 0.066 0.934 42 H 0.039 0.961 43 H 0.075 0.925 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.106 0.894 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.896 13.384 2.569 16.275 hybrid contribution 0.623 -0.217 0.226 0.697 sum -8.273 13.167 2.795 15.800 Atomic orbital electron populations 1.22533 0.94320 1.04387 1.02170 1.21884 0.97109 0.96759 0.98855 1.21831 1.00977 0.95590 1.01834 1.21104 0.96881 0.91037 0.89178 0.92525 1.58731 1.13519 1.23630 1.41152 1.20813 0.98465 0.95685 0.92071 1.21919 0.98011 1.01455 0.98477 1.22326 0.93353 1.01676 1.02832 1.20975 0.76923 0.81785 0.90448 1.90625 1.48444 1.66649 1.38756 1.45860 1.64868 1.06338 1.18449 1.20641 0.96489 0.91489 0.86732 1.19390 0.98646 0.90605 0.94015 1.19988 0.90843 1.39973 1.03895 0.93319 1.25313 0.98670 0.93190 0.96647 1.70290 1.11037 1.44655 1.26447 0.86650 0.77405 0.80351 0.83840 1.18570 1.22569 1.18864 1.23076 1.04209 1.00895 0.95540 1.22811 0.90144 1.02981 1.03245 0.92727 0.91757 0.89585 0.90098 0.93065 0.93066 0.91530 0.84416 0.84419 0.88780 0.93392 0.92883 0.91066 0.92737 0.88317 0.75834 0.93356 0.96128 0.92528 0.89522 0.90062 0.89373 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 7.61 71.98 0.55 -2.00 16 2 C -0.13 -2.21 2.29 -10.79 -0.02 -2.23 16 3 C -0.14 -2.33 9.21 71.98 0.66 -1.67 16 4 C 0.13 3.25 1.61 44.92 0.07 3.32 16 5 H 0.06 1.70 7.82 -2.38 -0.02 1.68 16 6 N -0.84 -21.02 7.12 -168.67 -1.20 -22.22 16 7 C -0.07 -1.87 0.50 -52.93 -0.03 -1.90 16 8 C -0.14 -3.93 8.15 71.98 0.59 -3.34 16 9 C -0.14 -3.19 6.56 71.99 0.47 -2.72 16 10 C 0.51 19.67 6.20 87.65 0.54 20.21 16 11 O -0.57 -25.63 15.03 -3.04 -0.05 -25.67 16 12 N -0.70 -28.49 5.01 -463.06 -2.32 -30.81 16 13 C 0.17 7.63 5.48 86.38 0.47 8.11 16 14 C -0.03 -1.12 1.11 -52.93 -0.06 -1.18 16 15 C -0.51 -26.55 8.49 25.60 0.22 -26.33 16 16 H 0.05 2.74 8.06 -2.91 -0.02 2.72 16 17 C 0.07 3.60 5.35 84.66 0.45 4.05 16 18 N -0.89 -50.97 13.96 21.45 0.30 -50.67 16 19 Si 0.89 43.11 25.92 68.60 1.78 44.89 16 20 H -0.26 -12.49 6.91 99.48 0.69 -11.80 16 21 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 22 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 23 C -0.20 -7.95 8.24 30.62 0.25 -7.69 16 24 C -0.15 -5.75 9.93 30.62 0.30 -5.45 16 25 H 0.05 0.77 6.72 -2.38 -0.02 0.75 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 1.22 3.60 -2.38 -0.01 1.21 16 28 H 0.08 1.39 6.38 -2.39 -0.02 1.37 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.83 7.20 -2.39 -0.02 0.81 16 31 H 0.07 0.89 8.05 -2.39 -0.02 0.88 16 32 H 0.34 7.44 5.36 -89.70 -0.48 6.96 16 33 H 0.34 7.43 8.20 -89.70 -0.74 6.69 16 34 H 0.09 1.99 6.85 -2.39 -0.02 1.97 16 35 H 0.05 1.62 7.66 -2.39 -0.02 1.61 16 36 H 0.05 1.51 7.89 -2.39 -0.02 1.49 16 37 H 0.07 1.45 5.48 -2.39 -0.01 1.44 16 38 H 0.05 1.31 6.87 -2.39 -0.02 1.30 16 39 H 0.10 1.65 5.84 -2.39 -0.01 1.63 16 40 H 0.41 16.05 6.75 -92.71 -0.63 15.42 16 41 H 0.05 2.08 8.06 -2.39 -0.02 2.07 16 42 H 0.02 1.03 7.38 -2.39 -0.02 1.01 16 43 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 44 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 45 H 0.08 3.32 7.59 -2.39 -0.02 3.31 16 46 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 47 H 0.09 3.11 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -63.42 349.65 2.11 -61.31 By element: Atomic # 1 Polarization: 42.86 SS G_CDS: -0.88 Total: 41.99 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 4.48 Total: -18.81 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -3.22 Total: -103.70 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.05 Total: -25.67 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.78 Total: 44.89 kcal Total: -63.42 2.11 -61.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713010955.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.467 kcal (2) G-P(sol) polarization free energy of solvation -63.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds