Wall clock time and date at job start Tue Mar 31 2020 06:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47520 * 2 1 4 4 C 1.53005 * 109.47231 * 120.00473 * 2 1 3 5 5 H 1.09004 * 108.73719 * 305.08948 * 4 2 1 6 6 C 1.54268 * 108.99010 * 186.66093 * 4 2 1 7 7 C 1.53812 * 112.02424 * 197.73736 * 6 4 2 8 8 C 1.50811 * 111.62094 * 319.00011 * 7 6 4 9 9 N 1.47624 * 108.04027 * 95.06740 * 8 7 6 10 10 C 1.46903 * 111.00283 * 150.30778 * 9 8 7 11 11 C 1.50700 * 109.47162 * 298.90888 * 10 9 8 12 12 O 1.21275 * 119.99854 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99824 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99741 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47250 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99804 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00279 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00059 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00165 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47012 * 60.00359 * 19 17 15 21 21 H 1.48497 * 109.47258 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46939 * 300.00751 * 19 17 15 23 23 C 1.39784 * 114.77154 * 277.16938 * 9 8 7 24 24 C 1.50750 * 108.85687 * 63.54152 * 4 2 1 25 25 H 1.09000 * 109.46438 * 294.12402 * 1 2 3 26 26 H 1.08998 * 109.46900 * 54.11989 * 1 2 3 27 27 H 1.08998 * 109.47162 * 174.12299 * 1 2 3 28 28 H 1.08998 * 109.47101 * 239.99823 * 2 1 3 29 29 H 1.09001 * 109.47529 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46901 * 300.00398 * 3 2 1 31 31 H 1.08998 * 109.47078 * 59.99809 * 3 2 1 32 32 H 1.08996 * 108.98830 * 77.05957 * 6 4 2 33 33 H 1.08994 * 108.84697 * 318.32758 * 6 4 2 34 34 H 1.08998 * 109.05162 * 198.44525 * 7 6 4 35 35 H 1.09007 * 109.04825 * 79.54702 * 7 6 4 36 36 H 1.08998 * 109.75059 * 335.42717 * 8 7 6 37 37 H 1.09004 * 109.75319 * 214.70536 * 8 7 6 38 38 H 1.08999 * 109.46874 * 58.91086 * 10 9 8 39 39 H 1.09005 * 109.47141 * 178.90454 * 10 9 8 40 40 H 0.97003 * 120.00143 * 0.02562 * 13 11 10 41 41 H 1.08999 * 109.47513 * 300.00353 * 14 13 11 42 42 H 1.08997 * 109.47639 * 60.00525 * 14 13 11 43 43 H 0.97001 * 119.99866 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.02192 * 301.68970 * 23 9 8 45 45 H 1.08995 * 109.02255 * 182.85691 * 23 9 8 46 46 H 1.09003 * 109.53708 * 93.94874 * 24 4 2 47 47 H 1.09003 * 109.54246 * 333.77742 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.5973 -0.2539 2.1288 6 6 3.5734 -0.5700 1.3254 7 6 4.2084 -1.6017 2.2732 8 6 3.3872 -1.7860 3.5246 9 7 2.4964 -2.9453 3.3201 10 6 2.2081 -3.6189 4.5934 11 6 3.4932 -4.1255 5.1958 12 8 4.5454 -3.9437 4.6209 13 7 3.4731 -4.7805 6.3736 14 6 4.7223 -5.2734 6.9589 15 6 4.4266 -5.9643 8.2652 16 1 3.4098 -6.0300 8.6233 17 6 5.4540 -6.5135 9.0026 18 7 6.6922 -6.4339 8.5664 19 14 5.0875 -7.3705 10.6215 20 1 4.1691 -8.5122 10.3802 21 1 6.3537 -7.8701 11.2149 22 1 4.4482 -6.4100 11.5564 23 6 1.3171 -2.6622 2.6250 24 6 1.6032 -2.1631 1.1918 25 1 -0.3632 0.4200 0.9380 26 1 -0.3633 0.6023 -0.8327 27 1 -0.3633 -1.0222 -0.1052 28 1 1.8933 -0.5138 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9563 0.8899 32 1 3.8136 0.4322 1.6801 33 1 3.9903 -0.7019 0.3270 34 1 5.2071 -1.2635 2.5495 35 1 4.2884 -2.5579 1.7560 36 1 2.7918 -0.8920 3.7094 37 1 4.0456 -1.9726 4.3731 38 1 1.7384 -2.9138 5.2792 39 1 1.5344 -4.4573 4.4165 40 1 2.6314 -4.9261 6.8332 41 1 5.1914 -5.9789 6.2732 42 1 5.3965 -4.4354 7.1353 43 1 7.4151 -6.8199 9.0854 44 1 0.7623 -1.8946 3.1644 45 1 0.7103 -3.5661 2.5719 46 1 2.3945 -2.7663 0.7467 47 1 0.6986 -2.2462 0.5894 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734149702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:41 Heat of formation + Delta-G solvation = -53.204857 kcal Electronic energy + Delta-G solvation = -22921.490453 eV Core-core repulsion = 19717.349202 eV Total energy + Delta-G solvation = -3204.141251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.07058 -38.52296 -36.42505 -34.09922 -33.12522 -32.27706 -31.43729 -28.62980 -27.71400 -26.61482 -25.04940 -24.48904 -22.34336 -20.96337 -20.75514 -19.61506 -19.04951 -17.05485 -16.31795 -15.66023 -15.57599 -15.12830 -14.92789 -14.74400 -14.46565 -14.20656 -13.99299 -13.67629 -13.25468 -13.04006 -12.56765 -12.48821 -12.33771 -12.09379 -11.96816 -11.84717 -11.65649 -11.56153 -11.42709 -11.09665 -10.98216 -10.86236 -10.76545 -10.55563 -10.30069 -10.27675 -10.15899 -10.05839 -9.39290 -8.90078 -8.70493 -8.00828 -7.81043 -6.15269 -4.22175 3.25750 3.30554 3.32010 3.44133 3.81847 4.27816 4.44944 4.48016 4.63509 4.69376 4.98395 5.01008 5.20596 5.21481 5.26974 5.28437 5.39057 5.40328 5.43113 5.51166 5.52466 5.61869 5.63296 5.68004 5.69702 5.79990 5.84958 5.86666 5.90739 5.95270 6.09396 6.18645 6.22550 6.24334 6.33935 6.54041 6.64792 7.18197 7.35679 7.48707 7.54770 7.60000 7.70418 7.99287 8.67335 8.81391 9.16837 9.44724 10.94880 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046697 B = 0.002832 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.466544 B = 9882.962474 C =10233.255868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.082 4.082 5 H 0.063 0.937 6 C -0.112 4.112 7 C -0.110 4.110 8 C 0.070 3.930 9 N -0.538 5.538 10 C 0.040 3.960 11 C 0.497 3.503 12 O -0.536 6.536 13 N -0.716 5.716 14 C 0.252 3.748 15 C -0.543 4.543 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.276 1.276 23 C 0.079 3.921 24 C -0.116 4.116 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.029 0.971 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.389 0.611 41 H 0.026 0.974 42 H 0.025 0.975 43 H 0.266 0.734 44 H 0.015 0.985 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.096 12.620 -15.073 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.100 4.100 5 H 0.081 0.919 6 C -0.150 4.150 7 C -0.148 4.148 8 C -0.056 4.056 9 N -0.262 5.262 10 C -0.090 4.090 11 C 0.281 3.719 12 O -0.414 6.414 13 N -0.366 5.366 14 C 0.131 3.869 15 C -0.582 4.582 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.051 4.051 24 C -0.153 4.153 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.221 0.779 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.076 0.924 44 H 0.033 0.967 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.877 12.406 -15.713 23.278 hybrid contribution -1.009 -0.054 1.653 1.937 sum -12.886 12.352 -14.060 22.722 Atomic orbital electron populations 1.21916 0.95524 1.01659 1.01480 1.21237 0.95444 0.96110 0.98434 1.21894 1.01354 0.96072 1.01285 1.21117 0.95782 0.95718 0.97378 0.91904 1.22061 0.94300 0.99027 0.99575 1.21292 0.98157 0.99710 0.95680 1.21867 0.94936 0.89175 0.99647 1.58382 1.18478 1.29770 1.19600 1.21962 0.96602 0.99382 0.91093 1.20330 0.90496 0.79432 0.81655 1.90642 1.32419 1.57227 1.61136 1.46465 1.12603 1.56313 1.21175 1.19056 0.80710 0.94454 0.92642 1.21200 0.94028 1.37653 1.05302 0.92007 1.24953 0.94813 0.95934 0.98328 1.69968 0.99213 1.44425 1.38707 0.86481 0.77666 0.79792 0.82998 1.20067 1.21077 1.20100 1.20925 0.90589 0.99281 0.94311 1.21625 1.01806 0.95776 0.96132 0.92858 0.93030 0.92362 0.91351 0.92315 0.93174 0.92924 0.92619 0.92436 0.92124 0.90473 0.95244 0.89253 0.92725 0.88617 0.77891 0.95590 0.95684 0.92408 0.96750 0.91467 0.90634 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.85 37.16 0.33 -0.76 16 2 C -0.09 -0.76 2.37 -90.62 -0.21 -0.97 16 3 C -0.15 -1.14 8.71 37.16 0.32 -0.82 16 4 C -0.08 -0.78 1.31 -91.08 -0.12 -0.90 16 5 H 0.06 0.65 6.58 -51.93 -0.34 0.31 16 6 C -0.11 -1.18 4.12 -25.64 -0.11 -1.28 16 7 C -0.11 -1.49 5.41 -27.41 -0.15 -1.63 16 8 C 0.07 1.02 4.62 -4.52 -0.02 1.00 16 9 N -0.54 -7.68 3.76 -241.45 -0.91 -8.58 16 10 C 0.04 0.59 5.46 -4.97 -0.03 0.56 16 11 C 0.50 9.84 7.25 -10.99 -0.08 9.76 16 12 O -0.54 -12.66 14.29 5.56 0.08 -12.58 16 13 N -0.72 -15.01 5.55 -61.48 -0.34 -15.36 16 14 C 0.25 6.70 5.43 -5.19 -0.03 6.67 16 15 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 16 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 19 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 C 0.08 0.89 4.93 -6.74 -0.03 0.86 16 24 C -0.12 -1.16 5.01 -27.11 -0.14 -1.30 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.41 6.34 -51.93 -0.33 0.08 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.46 6.67 -51.93 -0.35 0.11 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.56 7.37 -51.93 -0.38 0.18 16 33 H 0.06 0.58 7.98 -51.93 -0.41 0.16 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.17 7.26 -51.93 -0.38 0.79 16 36 H 0.03 0.39 6.67 -51.93 -0.35 0.05 16 37 H 0.09 1.58 5.61 -51.93 -0.29 1.29 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.10 1.20 7.83 -51.93 -0.41 0.80 16 40 H 0.39 6.96 8.32 -40.82 -0.34 6.62 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.01 0.16 7.55 -51.93 -0.39 -0.23 16 45 H 0.07 0.71 7.80 -51.93 -0.40 0.30 16 46 H 0.07 0.87 7.11 -51.93 -0.37 0.50 16 47 H 0.07 0.60 5.72 -51.93 -0.30 0.31 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -30.88 353.94 -9.17 -40.06 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.38 Total: 2.98 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -0.68 Total: -2.25 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.51 Total: -49.42 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.88 -9.17 -40.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734149702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.150 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds