Wall clock time and date at job start Tue Mar 31 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47520 * 2 1 4 4 C 1.53005 * 109.47231 * 120.00473 * 2 1 3 5 5 H 1.09004 * 108.73719 * 305.08948 * 4 2 1 6 6 C 1.54268 * 108.99010 * 186.66093 * 4 2 1 7 7 C 1.53812 * 112.02424 * 197.73736 * 6 4 2 8 8 C 1.50811 * 111.62094 * 319.00011 * 7 6 4 9 9 N 1.47624 * 108.04027 * 95.06740 * 8 7 6 10 10 C 1.46903 * 111.00283 * 150.30778 * 9 8 7 11 11 C 1.50700 * 109.47162 * 298.90888 * 10 9 8 12 12 O 1.21275 * 119.99854 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99824 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99741 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47250 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99804 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00279 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00059 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00165 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47012 * 60.00359 * 19 17 15 21 21 H 1.48497 * 109.47258 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46939 * 300.00751 * 19 17 15 23 23 C 1.39784 * 114.77154 * 277.16938 * 9 8 7 24 24 C 1.50750 * 108.85687 * 63.54152 * 4 2 1 25 25 H 1.09000 * 109.46438 * 294.12402 * 1 2 3 26 26 H 1.08998 * 109.46900 * 54.11989 * 1 2 3 27 27 H 1.08998 * 109.47162 * 174.12299 * 1 2 3 28 28 H 1.08998 * 109.47101 * 239.99823 * 2 1 3 29 29 H 1.09001 * 109.47529 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46901 * 300.00398 * 3 2 1 31 31 H 1.08998 * 109.47078 * 59.99809 * 3 2 1 32 32 H 1.08996 * 108.98830 * 77.05957 * 6 4 2 33 33 H 1.08994 * 108.84697 * 318.32758 * 6 4 2 34 34 H 1.08998 * 109.05162 * 198.44525 * 7 6 4 35 35 H 1.09007 * 109.04825 * 79.54702 * 7 6 4 36 36 H 1.08998 * 109.75059 * 335.42717 * 8 7 6 37 37 H 1.09004 * 109.75319 * 214.70536 * 8 7 6 38 38 H 1.08999 * 109.46874 * 58.91086 * 10 9 8 39 39 H 1.09005 * 109.47141 * 178.90454 * 10 9 8 40 40 H 0.97003 * 120.00143 * 0.02562 * 13 11 10 41 41 H 1.08999 * 109.47513 * 300.00353 * 14 13 11 42 42 H 1.08997 * 109.47639 * 60.00525 * 14 13 11 43 43 H 0.97001 * 119.99866 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.02192 * 301.68970 * 23 9 8 45 45 H 1.08995 * 109.02255 * 182.85691 * 23 9 8 46 46 H 1.09003 * 109.53708 * 93.94874 * 24 4 2 47 47 H 1.09003 * 109.54246 * 333.77742 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.5973 -0.2539 2.1288 6 6 3.5734 -0.5700 1.3254 7 6 4.2084 -1.6017 2.2732 8 6 3.3872 -1.7860 3.5246 9 7 2.4964 -2.9453 3.3201 10 6 2.2081 -3.6189 4.5934 11 6 3.4932 -4.1255 5.1958 12 8 4.5454 -3.9437 4.6209 13 7 3.4731 -4.7805 6.3736 14 6 4.7223 -5.2734 6.9589 15 6 4.4266 -5.9643 8.2652 16 1 3.4098 -6.0300 8.6233 17 6 5.4540 -6.5135 9.0026 18 7 6.6922 -6.4339 8.5664 19 14 5.0875 -7.3705 10.6215 20 1 4.1691 -8.5122 10.3802 21 1 6.3537 -7.8701 11.2149 22 1 4.4482 -6.4100 11.5564 23 6 1.3171 -2.6622 2.6250 24 6 1.6032 -2.1631 1.1918 25 1 -0.3632 0.4200 0.9380 26 1 -0.3633 0.6023 -0.8327 27 1 -0.3633 -1.0222 -0.1052 28 1 1.8933 -0.5138 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9563 0.8899 32 1 3.8136 0.4322 1.6801 33 1 3.9903 -0.7019 0.3270 34 1 5.2071 -1.2635 2.5495 35 1 4.2884 -2.5579 1.7560 36 1 2.7918 -0.8920 3.7094 37 1 4.0456 -1.9726 4.3731 38 1 1.7384 -2.9138 5.2792 39 1 1.5344 -4.4573 4.4165 40 1 2.6314 -4.9261 6.8332 41 1 5.1914 -5.9789 6.2732 42 1 5.3965 -4.4354 7.1353 43 1 7.4151 -6.8199 9.0854 44 1 0.7623 -1.8946 3.1644 45 1 0.7103 -3.5661 2.5719 46 1 2.3945 -2.7663 0.7467 47 1 0.6986 -2.2462 0.5894 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734149702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:40 Heat of formation + Delta-G solvation = -73.527101 kcal Electronic energy + Delta-G solvation = -22922.371691 eV Core-core repulsion = 19717.349202 eV Total energy + Delta-G solvation = -3205.022489 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.23269 -39.89988 -37.42484 -36.03577 -34.37895 -34.02201 -32.34047 -30.14201 -28.66828 -27.97369 -25.97986 -25.68185 -24.23034 -21.80903 -21.69803 -21.28946 -19.92131 -18.89464 -17.56389 -17.37476 -16.76557 -16.71158 -16.10477 -15.91086 -15.67923 -15.40933 -15.09911 -14.78750 -14.40466 -14.28586 -14.02480 -13.87503 -13.65250 -13.18064 -12.99818 -12.95110 -12.90109 -12.68638 -12.58896 -12.43345 -12.23889 -12.21425 -12.04233 -11.67467 -11.54099 -11.50084 -11.07862 -11.01780 -10.90591 -10.77812 -10.55197 -9.76049 -9.07753 -8.28641 -6.45392 1.42824 1.47050 1.55217 1.84240 2.30572 2.51935 3.05969 3.08497 3.72463 3.88302 3.89779 4.02829 4.13520 4.24883 4.30186 4.33654 4.39332 4.47006 4.51840 4.64958 4.66558 4.75317 4.78195 4.85579 4.90700 4.97136 5.04791 5.10286 5.13138 5.14244 5.19690 5.25986 5.27051 5.38235 5.39789 5.46103 5.48919 5.50673 5.60651 5.70905 5.73555 5.86271 6.10013 6.58591 6.66097 6.98818 7.24416 7.56977 8.83351 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046697 B = 0.002832 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.466544 B = 9882.962474 C =10233.255868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.077 4.077 5 H 0.060 0.940 6 C -0.104 4.104 7 C -0.106 4.106 8 C 0.075 3.925 9 N -0.553 5.553 10 C 0.054 3.946 11 C 0.492 3.508 12 O -0.580 6.580 13 N -0.711 5.711 14 C 0.270 3.730 15 C -0.556 4.556 16 H 0.084 0.916 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.985 3.015 20 H -0.262 1.262 21 H -0.286 1.286 22 H -0.262 1.262 23 C 0.075 3.925 24 C -0.111 4.111 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.407 0.593 41 H -0.016 1.016 42 H -0.015 1.015 43 H 0.268 0.732 44 H 0.026 0.974 45 H 0.081 0.919 46 H 0.057 0.943 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.285 12.969 -14.943 25.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.095 4.095 5 H 0.078 0.922 6 C -0.142 4.142 7 C -0.145 4.145 8 C -0.051 4.051 9 N -0.278 5.278 10 C -0.077 4.077 11 C 0.279 3.721 12 O -0.460 6.460 13 N -0.362 5.362 14 C 0.147 3.853 15 C -0.594 4.594 16 H 0.102 0.898 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.808 3.192 20 H -0.186 1.186 21 H -0.212 1.212 22 H -0.186 1.186 23 C -0.054 4.054 24 C -0.149 4.149 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.144 0.856 40 H 0.243 0.757 41 H 0.002 0.998 42 H 0.003 0.997 43 H 0.077 0.923 44 H 0.044 0.956 45 H 0.100 0.900 46 H 0.076 0.924 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.129 12.771 -15.599 25.205 hybrid contribution 0.029 -0.129 1.537 1.542 sum -15.100 12.642 -14.062 24.198 Atomic orbital electron populations 1.21896 0.94582 1.02095 1.01788 1.21200 0.96173 0.96072 0.97438 1.21890 1.01123 0.95885 1.01693 1.21069 0.94611 0.95721 0.98145 0.92188 1.21991 0.95238 0.98102 0.98855 1.21228 0.97843 0.99564 0.95826 1.21715 0.94828 0.90060 0.98513 1.58368 1.19993 1.29757 1.19712 1.21915 0.93304 1.00887 0.91557 1.21378 0.92085 0.77984 0.80666 1.90629 1.34819 1.58480 1.62116 1.46199 1.11485 1.56634 1.21923 1.18463 0.82351 0.92085 0.92389 1.21606 0.95175 1.37370 1.05248 0.89806 1.26084 0.94384 0.96573 1.02662 1.70140 1.00590 1.45663 1.40659 0.85208 0.77591 0.78825 0.77598 1.18605 1.21153 1.18626 1.21051 0.89418 1.00418 0.94528 1.21613 1.02143 0.95550 0.95599 0.92933 0.92273 0.91947 0.91358 0.92715 0.92299 0.93012 0.91953 0.91924 0.93517 0.92647 0.93636 0.93065 0.90077 0.85642 0.75725 0.99768 0.99725 0.92283 0.95562 0.90038 0.92380 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.85 71.98 0.64 -1.08 16 2 C -0.09 -1.26 2.37 -10.79 -0.03 -1.28 16 3 C -0.15 -1.98 8.71 71.98 0.63 -1.35 16 4 C -0.08 -1.33 1.31 -11.09 -0.01 -1.34 16 5 H 0.06 1.10 6.58 -2.38 -0.02 1.08 16 6 C -0.10 -2.12 4.12 31.30 0.13 -1.99 16 7 C -0.11 -2.96 5.41 30.16 0.16 -2.80 16 8 C 0.08 2.22 4.62 85.45 0.39 2.61 16 9 N -0.55 -15.18 3.76 -917.82 -3.45 -18.63 16 10 C 0.05 1.46 5.46 85.56 0.47 1.93 16 11 C 0.49 19.79 7.25 87.66 0.64 20.42 16 12 O -0.58 -28.84 14.29 -3.01 -0.04 -28.89 16 13 N -0.71 -30.18 5.55 -466.80 -2.59 -32.77 16 14 C 0.27 15.01 5.43 85.63 0.46 15.48 16 15 C -0.56 -30.47 9.28 25.60 0.24 -30.24 16 16 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 17 C 0.00 0.14 5.46 84.65 0.46 0.60 16 18 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 19 Si 0.98 42.51 29.54 68.60 2.03 44.53 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 21 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 23 C 0.07 1.49 4.93 88.07 0.43 1.93 16 24 C -0.11 -2.01 5.01 30.35 0.15 -1.86 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.68 6.34 -2.39 -0.02 0.66 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 0.76 6.67 -2.39 -0.02 0.75 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 1.19 7.37 -2.39 -0.02 1.17 16 33 H 0.06 1.21 7.98 -2.39 -0.02 1.19 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.05 1.76 7.26 -2.38 -0.02 1.75 16 36 H 0.05 1.17 6.67 -2.39 -0.02 1.15 16 37 H 0.05 1.90 5.61 -2.39 -0.01 1.89 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.13 2.73 7.83 -2.38 -0.02 2.71 16 40 H 0.41 14.10 8.32 -92.71 -0.77 13.33 16 41 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 42 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 43 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 44 H 0.03 0.49 7.55 -2.39 -0.02 0.47 16 45 H 0.08 1.43 7.80 -2.39 -0.02 1.41 16 46 H 0.06 1.28 7.11 -2.39 -0.02 1.26 16 47 H 0.09 1.28 5.72 -2.39 -0.01 1.27 16 Total: -1.00 -70.49 353.94 1.16 -69.33 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.17 Total: 21.98 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 4.76 Total: 1.02 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -5.75 Total: -107.98 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.04 Total: -28.89 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -70.49 1.16 -69.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734149702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.193 kcal (2) G-P(sol) polarization free energy of solvation -70.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds