Wall clock time and date at job start Tue Mar 31 2020 06:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47005 * 2 1 4 4 C 1.53003 * 109.47010 * 119.99936 * 2 1 3 5 5 H 1.09004 * 108.73774 * 305.19593 * 4 2 1 6 6 C 1.50462 * 108.76902 * 63.49690 * 4 2 1 7 7 C 1.54510 * 108.85217 * 212.95362 * 6 4 2 8 8 C 1.45853 * 111.59123 * 282.80629 * 7 6 4 9 9 N 1.47805 * 112.91638 * 61.32800 * 8 7 6 10 10 C 1.46909 * 111.00034 * 153.86524 * 9 8 7 11 11 C 1.50702 * 109.46687 * 66.04514 * 10 9 8 12 12 O 1.21280 * 120.00657 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99375 * 180.27478 * 11 10 9 14 14 C 1.46503 * 119.99406 * 179.72836 * 13 11 10 15 15 C 1.50705 * 109.46668 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00273 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99920 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00240 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99779 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47088 * 90.00263 * 19 17 15 21 21 H 1.48502 * 109.46964 * 209.99955 * 19 17 15 22 22 H 1.48495 * 109.47543 * 330.00067 * 19 17 15 23 23 C 1.44270 * 109.46348 * 276.73677 * 9 8 7 24 24 C 1.54073 * 111.97833 * 96.43911 * 23 9 8 25 25 H 1.09001 * 109.46838 * 54.08102 * 1 2 3 26 26 H 1.09003 * 109.47260 * 174.07741 * 1 2 3 27 27 H 1.09001 * 109.47573 * 294.07843 * 1 2 3 28 28 H 1.08997 * 109.47357 * 240.00051 * 2 1 3 29 29 H 1.09000 * 109.46956 * 179.97438 * 3 2 1 30 30 H 1.08990 * 109.47190 * 300.00064 * 3 2 1 31 31 H 1.09005 * 109.47091 * 60.00099 * 3 2 1 32 32 H 1.09001 * 109.57688 * 93.14392 * 6 4 2 33 33 H 1.09000 * 109.67901 * 332.82740 * 6 4 2 34 34 H 1.08998 * 109.05329 * 162.26358 * 7 6 4 35 35 H 1.08999 * 109.05495 * 43.35373 * 7 6 4 36 36 H 1.09000 * 108.79937 * 300.44268 * 8 7 6 37 37 H 1.08998 * 108.79861 * 182.21293 * 8 7 6 38 38 H 1.08996 * 109.47010 * 306.05209 * 10 9 8 39 39 H 1.08996 * 109.47314 * 186.04760 * 10 9 8 40 40 H 0.96990 * 120.00539 * 359.72607 * 13 11 10 41 41 H 1.08999 * 109.46972 * 299.99653 * 14 13 11 42 42 H 1.09001 * 109.47552 * 60.00325 * 14 13 11 43 43 H 0.96996 * 120.00483 * 179.97438 * 18 17 15 44 44 H 1.09004 * 108.97813 * 217.07969 * 23 9 8 45 45 H 1.08995 * 108.98194 * 335.79332 * 23 9 8 46 46 H 1.09002 * 108.91430 * 198.19398 * 24 23 9 47 47 H 1.08999 * 108.84633 * 79.59080 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.5958 -0.2549 2.1287 6 6 1.6020 -2.1595 1.1906 7 6 1.3389 -2.6603 2.6285 8 6 2.5831 -2.9517 3.3314 9 7 3.4524 -1.7654 3.4786 10 6 4.3296 -1.8976 4.6497 11 6 5.3005 -3.0280 4.4249 12 8 5.2657 -3.6609 3.3910 13 7 6.2044 -3.3388 5.3752 14 6 7.1444 -4.4416 5.1592 15 6 8.0402 -4.5810 6.3630 16 1 7.9210 -3.9151 7.2049 17 6 9.0114 -5.5594 6.3901 18 7 9.7935 -5.6808 7.4403 19 14 9.2161 -6.7125 4.9347 20 1 10.1838 -6.1275 3.9720 21 1 9.7232 -8.0247 5.4105 22 1 7.9045 -6.9020 4.2648 23 6 4.2236 -1.5820 2.2732 24 6 3.5726 -0.5594 1.3222 25 1 -0.3633 0.6029 -0.8323 26 1 -0.3634 -1.0222 -0.1060 27 1 -0.3634 0.4193 0.9382 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 2.3863 -2.7617 0.7320 33 1 0.6879 -2.2412 0.6025 34 1 0.7343 -3.5662 2.5847 35 1 0.7909 -1.8944 3.1773 36 1 3.1266 -3.7190 2.7801 37 1 2.3446 -3.3373 4.3226 38 1 3.7268 -2.1067 5.5333 39 1 4.8809 -0.9690 4.7973 40 1 6.2326 -2.8324 6.2019 41 1 6.5896 -5.3679 5.0103 42 1 7.7503 -4.2351 4.2769 43 1 10.4764 -6.3693 7.4595 44 1 5.2211 -1.2329 2.5401 45 1 4.3105 -2.5390 1.7588 46 1 3.9897 -0.6901 0.3237 47 1 3.8055 0.4459 1.6733 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734149703.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:47 Heat of formation + Delta-G solvation = -53.576453 kcal Electronic energy + Delta-G solvation = -23219.383947 eV Core-core repulsion = 20015.226583 eV Total energy + Delta-G solvation = -3204.157364 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.21800 -38.58658 -36.29457 -34.29044 -33.11464 -32.40511 -31.55550 -28.97742 -27.81099 -26.95049 -24.68888 -24.58841 -22.08215 -20.93577 -20.61313 -19.95469 -19.16191 -17.25414 -16.18361 -16.04935 -15.69387 -15.15384 -14.96261 -14.67405 -14.51522 -14.24169 -13.86969 -13.58516 -13.25740 -13.08360 -12.84993 -12.51963 -12.42793 -12.36500 -12.15192 -11.76847 -11.60368 -11.43030 -11.36218 -11.10896 -11.04421 -10.80902 -10.65438 -10.55114 -10.29710 -10.13884 -10.01599 -9.96831 -9.79872 -9.51813 -8.81067 -8.18722 -7.98940 -6.24628 -4.27035 3.15173 3.23793 3.30341 3.38280 3.95605 4.03573 4.30168 4.56555 4.71860 4.80255 4.95695 5.10346 5.13498 5.17632 5.29120 5.37820 5.39665 5.43134 5.47700 5.49773 5.55512 5.63124 5.65444 5.72454 5.77421 5.87789 5.90767 5.96834 6.04487 6.09875 6.14721 6.18947 6.24833 6.34445 6.36628 6.47596 6.56515 6.75677 7.02939 7.07797 7.20424 7.24489 7.36127 8.09315 8.47646 8.71371 8.88074 9.35482 10.87350 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035789 B = 0.003197 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.177036 B = 8755.413169 C = 8765.971934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.069 4.069 5 H 0.073 0.927 6 C -0.116 4.116 7 C -0.110 4.110 8 C 0.046 3.954 9 N -0.503 5.503 10 C 0.033 3.967 11 C 0.466 3.534 12 O -0.559 6.559 13 N -0.704 5.704 14 C 0.220 3.780 15 C -0.544 4.544 16 H 0.079 0.921 17 C 0.078 3.922 18 N -0.892 5.892 19 Si 0.878 3.122 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.262 1.262 23 C 0.055 3.945 24 C -0.104 4.104 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.397 0.603 41 H 0.023 0.977 42 H 0.019 0.981 43 H 0.268 0.732 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.056 0.944 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.808 11.791 -11.727 24.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.088 4.088 5 H 0.092 0.908 6 C -0.154 4.154 7 C -0.148 4.148 8 C -0.081 4.081 9 N -0.225 5.225 10 C -0.099 4.099 11 C 0.250 3.750 12 O -0.439 6.439 13 N -0.353 5.353 14 C 0.098 3.902 15 C -0.582 4.582 16 H 0.097 0.903 17 C -0.126 4.126 18 N -0.529 5.529 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.186 1.186 23 C -0.074 4.074 24 C -0.142 4.142 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.230 0.770 41 H 0.041 0.959 42 H 0.037 0.963 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.963 11.645 -12.300 24.689 hybrid contribution 0.953 -1.145 -0.235 1.508 sum -17.010 10.500 -12.535 23.595 Atomic orbital electron populations 1.21908 0.95637 1.01496 1.01432 1.21289 0.95405 0.96179 0.98679 1.21888 1.01311 0.96101 1.01214 1.20876 0.95336 0.95303 0.97261 0.90837 1.21505 1.00972 0.96277 0.96597 1.20559 0.97267 1.01025 0.95949 1.21080 0.94536 0.91935 1.00569 1.62019 1.19684 1.38070 1.02766 1.22462 0.94327 0.97510 0.95575 1.21872 0.82598 0.86164 0.84329 1.90626 1.72288 1.53771 1.27190 1.46318 1.34270 1.35399 1.19283 1.19464 0.88053 0.85223 0.97468 1.21101 1.16469 1.18415 1.02224 0.90254 1.24805 0.94902 0.96864 0.96063 1.69876 1.20206 1.33868 1.28964 0.86809 0.79443 0.80508 0.82852 1.19870 1.20868 1.18633 1.21937 0.95158 0.99413 0.90852 1.22080 0.94841 0.99055 0.98230 0.93217 0.92523 0.92744 0.91700 0.92374 0.93372 0.92793 0.92175 0.91813 0.92108 0.91754 0.92276 0.92287 0.88208 0.88083 0.76984 0.95889 0.96336 0.92234 0.92539 0.92040 0.92532 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.85 37.16 0.33 -0.81 16 2 C -0.10 -0.84 2.36 -90.62 -0.21 -1.05 16 3 C -0.15 -1.21 8.69 37.16 0.32 -0.88 16 4 C -0.07 -0.69 1.44 -91.21 -0.13 -0.82 16 5 H 0.07 0.80 7.37 -51.93 -0.38 0.41 16 6 C -0.12 -1.20 4.96 -27.21 -0.13 -1.34 16 7 C -0.11 -1.19 5.53 -29.32 -0.16 -1.35 16 8 C 0.05 0.61 4.23 -6.71 -0.03 0.58 16 9 N -0.50 -6.65 4.45 -241.00 -1.07 -7.73 16 10 C 0.03 0.44 5.57 -4.97 -0.03 0.41 16 11 C 0.47 8.45 7.04 -10.98 -0.08 8.38 16 12 O -0.56 -11.89 12.38 5.56 0.07 -11.82 16 13 N -0.70 -13.92 5.55 -61.47 -0.34 -14.26 16 14 C 0.22 5.39 4.50 -5.19 -0.02 5.37 16 15 C -0.54 -14.89 9.83 -34.44 -0.34 -15.23 16 16 H 0.08 2.26 7.84 -52.49 -0.41 1.84 16 17 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 18 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 19 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 23 C 0.06 0.76 3.75 -4.67 -0.02 0.75 16 24 C -0.10 -1.16 4.33 -25.50 -0.11 -1.27 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.43 6.33 -51.93 -0.33 0.10 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.49 6.63 -51.93 -0.34 0.14 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.71 7.15 -51.93 -0.37 0.34 16 33 H 0.06 0.58 5.71 -51.93 -0.30 0.29 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.67 7.59 -51.93 -0.39 0.28 16 36 H 0.06 0.95 5.91 -51.93 -0.31 0.65 16 37 H 0.06 0.77 7.64 -51.93 -0.40 0.38 16 38 H 0.10 1.16 7.89 -51.93 -0.41 0.75 16 39 H 0.10 1.18 8.13 -51.93 -0.42 0.76 16 40 H 0.40 6.89 8.32 -40.82 -0.34 6.55 16 41 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 42 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.06 0.84 7.29 -51.93 -0.38 0.46 16 45 H 0.06 1.00 5.46 -51.93 -0.28 0.72 16 46 H 0.06 0.61 7.97 -51.93 -0.41 0.20 16 47 H 0.06 0.63 7.32 -51.93 -0.38 0.25 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -30.46 347.60 -9.04 -39.50 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -8.33 Total: 3.11 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -0.71 Total: -5.18 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.64 Total: -47.69 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.07 Total: -11.82 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.46 -9.04 -39.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734149703.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.073 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds