Wall clock time and date at job start Tue Mar 31 2020 06:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.47040 * 2 1 4 4 C 1.53005 * 109.46780 * 119.99633 * 2 1 3 5 5 H 1.08994 * 110.88643 * 296.19316 * 4 2 1 6 6 C 1.54625 * 110.96700 * 172.37769 * 4 2 1 7 7 C 1.51289 * 104.25935 * 266.46691 * 6 4 2 8 8 O 1.21278 * 124.94472 * 164.00964 * 7 6 4 9 9 N 1.34418 * 110.10940 * 344.14333 * 7 6 4 10 10 C 1.46501 * 124.34663 * 179.44121 * 9 7 6 11 11 N 1.46908 * 109.47035 * 280.36660 * 10 9 7 12 12 C 1.46898 * 110.99773 * 279.78901 * 11 10 9 13 13 C 1.50704 * 109.46799 * 170.00046 * 12 11 10 14 14 H 1.07997 * 119.99797 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00009 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00189 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00112 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47334 * 59.99794 * 17 15 13 19 19 H 1.48507 * 109.47447 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47266 * 300.00120 * 17 15 13 21 21 C 1.46898 * 111.00028 * 155.83095 * 11 10 9 22 22 C 1.53004 * 109.46965 * 294.60489 * 21 11 10 23 23 C 1.53000 * 109.46976 * 54.60064 * 21 11 10 24 24 C 1.46762 * 111.30425 * 359.17376 * 9 7 6 25 25 H 1.09000 * 109.46830 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46905 * 300.00169 * 1 2 3 27 27 H 1.08999 * 109.46584 * 59.99948 * 1 2 3 28 28 H 1.09000 * 109.46905 * 239.99830 * 2 1 3 29 29 H 1.09002 * 109.47400 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47504 * 300.00057 * 3 2 1 31 31 H 1.09000 * 109.47410 * 60.00140 * 3 2 1 32 32 H 1.09002 * 110.48529 * 25.36223 * 6 4 2 33 33 H 1.09001 * 110.48549 * 147.86761 * 6 4 2 34 34 H 1.09003 * 109.46867 * 160.37168 * 10 9 7 35 35 H 1.08998 * 109.47537 * 40.37027 * 10 9 7 36 36 H 1.09005 * 109.47138 * 289.99354 * 12 11 10 37 37 H 1.08991 * 109.47602 * 49.99876 * 12 11 10 38 38 H 0.96998 * 120.00273 * 179.97438 * 16 15 13 39 39 H 1.08990 * 109.47286 * 174.60229 * 21 11 10 40 40 H 1.08998 * 109.47122 * 186.14376 * 22 21 11 41 41 H 1.09001 * 109.46954 * 306.14616 * 22 21 11 42 42 H 1.08995 * 109.47147 * 66.14668 * 22 21 11 43 43 H 1.08998 * 109.47546 * 301.86840 * 23 21 11 44 44 H 1.08999 * 109.46844 * 61.87328 * 23 21 11 45 45 H 1.09004 * 109.46818 * 181.86856 * 23 21 11 46 46 H 1.08997 * 110.24822 * 136.27790 * 24 9 7 47 47 H 1.09002 * 110.24803 * 258.19424 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7457 -0.1879 2.1532 6 6 3.5737 -0.9094 1.1923 7 6 3.7582 -2.2848 0.5897 8 8 4.7956 -2.7052 0.1228 9 7 2.6043 -2.9720 0.6445 10 6 2.4289 -4.3348 0.1365 11 7 2.2539 -4.2952 -1.3216 12 6 0.8741 -3.9376 -1.6767 13 6 0.7904 -3.6669 -3.1568 14 1 1.6740 -3.7516 -3.7720 15 6 -0.4141 -3.3111 -3.7255 16 7 -1.4901 -3.2084 -2.9765 17 14 -0.5177 -2.9748 -5.5601 18 1 -0.1122 -4.1908 -6.3099 19 1 -1.9129 -2.6146 -5.9194 20 1 0.3896 -1.8523 -5.9096 21 6 2.6405 -5.5737 -1.9331 22 6 4.1414 -5.7989 -1.7385 23 6 1.8637 -6.7122 -1.2690 24 6 1.5443 -2.1839 1.2843 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 4.0282 -0.1480 0.5584 33 1 4.0000 -0.8738 2.1949 34 1 1.5481 -4.7833 0.5960 35 1 3.3089 -4.9298 0.3808 36 1 0.2078 -4.7611 -1.4197 37 1 0.5771 -3.0448 -1.1267 38 1 -2.3375 -2.9578 -3.3765 39 1 2.4117 -5.5507 -2.9985 40 1 4.4487 -6.6908 -2.2845 41 1 4.6901 -4.9355 -2.1147 42 1 4.3544 -5.9308 -0.6778 43 1 2.0668 -6.7145 -0.1981 44 1 0.7961 -6.5694 -1.4361 45 1 2.1747 -7.6640 -1.6998 46 1 0.6133 -2.2801 0.7256 47 1 1.4009 -2.5104 2.3143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739841944.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:35 Heat of formation + Delta-G solvation = -39.634713 kcal Electronic energy + Delta-G solvation = -24504.272531 eV Core-core repulsion = 21300.719725 eV Total energy + Delta-G solvation = -3203.552805 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.23414 -37.57289 -36.73298 -34.30338 -32.79224 -31.32145 -29.88420 -28.00077 -26.89116 -26.50445 -26.07418 -24.25330 -22.43735 -22.05219 -19.66575 -19.56081 -18.36728 -16.43684 -16.24414 -15.83792 -15.35968 -14.85816 -14.57451 -14.18142 -13.85060 -13.70678 -13.59083 -13.33165 -12.91045 -12.72501 -12.41248 -12.14486 -12.04420 -11.93340 -11.88270 -11.61488 -11.54604 -11.39112 -11.28711 -10.93941 -10.73732 -10.59479 -10.49378 -10.47172 -10.29030 -10.21601 -9.99888 -9.75188 -9.32464 -9.17494 -8.45919 -8.21262 -7.21216 -6.03416 -4.02998 3.08792 3.32688 3.36440 3.40707 3.56179 4.42744 4.61388 4.67204 4.82651 5.02843 5.20128 5.32522 5.35432 5.49436 5.57558 5.60742 5.64345 5.72204 5.77911 5.82337 5.85957 5.89183 5.90441 5.96338 6.00321 6.08978 6.13232 6.13806 6.29902 6.30612 6.37625 6.46615 6.57715 6.70764 6.75100 6.85942 6.88149 6.99879 7.34046 7.37747 7.65333 7.82910 8.10010 8.24703 8.55358 8.74613 9.03947 9.60726 11.06859 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011836 B = 0.007948 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.128112 B = 3521.843840 C = 5062.318372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.145 4.145 4 C -0.090 4.090 5 H 0.090 0.910 6 C -0.154 4.154 7 C 0.524 3.476 8 O -0.535 6.535 9 N -0.600 5.600 10 C 0.290 3.710 11 N -0.540 5.540 12 C 0.194 3.806 13 C -0.503 4.503 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.898 5.898 17 Si 0.892 3.108 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.277 1.277 21 C 0.089 3.911 22 C -0.140 4.140 23 C -0.182 4.182 24 C 0.098 3.902 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.080 0.920 36 H -0.007 1.007 37 H 0.031 0.969 38 H 0.260 0.740 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.043 0.957 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.090 0.910 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.496 3.243 10.314 11.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.109 4.109 5 H 0.108 0.892 6 C -0.194 4.194 7 C 0.311 3.689 8 O -0.412 6.412 9 N -0.335 5.335 10 C 0.078 3.922 11 N -0.266 5.266 12 C 0.069 3.931 13 C -0.541 4.541 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.537 5.537 17 Si 0.721 3.279 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.020 4.020 22 C -0.197 4.197 23 C -0.240 4.240 24 C -0.026 4.026 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.011 0.989 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.108 0.892 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.137 3.347 9.843 11.596 hybrid contribution -0.933 -0.371 -0.724 1.238 sum 4.204 2.976 9.119 10.473 Atomic orbital electron populations 1.21829 0.94483 1.02778 1.01037 1.21092 0.96392 0.95592 0.97781 1.21843 1.00724 0.96119 1.01492 1.22187 0.93915 0.95191 0.99621 0.89211 1.22458 0.97377 0.96773 1.02785 1.20684 0.83300 0.87015 0.77915 1.90663 1.29680 1.74101 1.46731 1.48319 1.11037 1.16050 1.58068 1.21704 0.99837 0.81029 0.89580 1.62031 1.28499 1.29589 1.06481 1.19781 0.81392 0.95144 0.96756 1.21103 0.94441 1.45729 0.92874 0.92159 1.24910 0.95700 0.95735 0.97910 1.69926 0.99716 1.48764 1.35333 0.86649 0.76802 0.78818 0.85673 1.20368 1.21434 1.20264 1.21509 0.93376 0.86658 1.00468 1.21862 0.96383 1.00982 1.00502 1.22481 1.02247 0.99481 0.99838 1.22327 0.92633 0.90158 0.97442 0.91476 0.93484 0.92579 0.89963 0.92828 0.92646 0.93016 0.88256 0.88701 0.93578 0.90251 0.98893 0.95138 0.93028 0.88822 0.93409 0.91835 0.93714 0.93788 0.91777 0.93065 0.89167 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.96 37.16 0.33 -1.76 16 2 C -0.09 -1.27 2.49 -90.61 -0.23 -1.50 16 3 C -0.14 -1.69 9.04 37.16 0.34 -1.36 16 4 C -0.09 -1.12 2.68 -88.98 -0.24 -1.36 16 5 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 6 C -0.15 -2.03 6.27 -26.74 -0.17 -2.20 16 7 C 0.52 9.40 8.03 -10.86 -0.09 9.31 16 8 O -0.54 -11.57 17.73 5.56 0.10 -11.47 16 9 N -0.60 -10.37 3.03 -175.90 -0.53 -10.90 16 10 C 0.29 5.35 4.13 -63.30 -0.26 5.09 16 11 N -0.54 -11.55 4.55 -231.96 -1.06 -12.61 16 12 C 0.19 4.78 4.45 -4.98 -0.02 4.76 16 13 C -0.50 -13.74 8.38 -34.44 -0.29 -14.03 16 14 H 0.06 1.69 7.17 -52.49 -0.38 1.31 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -25.43 13.29 55.43 0.74 -24.69 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.09 1.74 2.78 -67.71 -0.19 1.55 16 22 C -0.14 -2.42 9.02 37.16 0.34 -2.09 16 23 C -0.18 -3.13 8.59 37.16 0.32 -2.81 16 24 C 0.10 1.39 6.53 -3.12 -0.02 1.37 16 25 H 0.07 1.12 6.14 -51.93 -0.32 0.81 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.05 0.60 6.58 -51.93 -0.34 0.26 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.10 1.29 6.35 -51.93 -0.33 0.96 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.82 7.45 -51.93 -0.39 0.43 16 35 H 0.08 1.44 5.76 -51.93 -0.30 1.14 16 36 H -0.01 -0.17 6.40 -51.93 -0.33 -0.50 16 37 H 0.03 0.79 6.34 -51.93 -0.33 0.46 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.09 2.04 6.66 -51.93 -0.35 1.69 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.04 0.74 6.44 -51.93 -0.33 0.41 16 43 H 0.04 0.69 6.70 -51.93 -0.35 0.34 16 44 H 0.06 1.24 6.63 -51.93 -0.34 0.89 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.09 1.47 4.44 -51.93 -0.23 1.24 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 357.19 15.07 5.38 5.38 Total: -1.00 -30.55 357.19 -8.77 -39.32 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -8.10 Total: 2.00 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -0.27 Total: -3.50 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.85 Total: -48.21 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.10 Total: -11.47 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.55 -8.77 -39.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739841944.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.317 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds