Wall clock time and date at job start Tue Mar 31 2020 06:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47051 * 2 1 4 4 C 1.53000 * 109.47396 * 119.99809 * 2 1 3 5 5 H 1.09003 * 110.85739 * 297.66422 * 4 2 1 6 6 C 1.54633 * 110.96860 * 61.45461 * 4 2 1 7 7 C 1.51278 * 104.19438 * 93.36035 * 6 4 2 8 8 O 1.21286 * 124.94212 * 196.23483 * 7 6 4 9 9 N 1.34424 * 110.11791 * 16.25191 * 7 6 4 10 10 C 1.46497 * 124.34710 * 180.40853 * 9 7 6 11 11 N 1.46899 * 109.46929 * 99.49065 * 10 9 7 12 12 C 1.46901 * 111.00149 * 156.78210 * 11 10 9 13 13 C 1.50692 * 109.47490 * 201.78701 * 12 11 10 14 14 H 1.08000 * 120.00078 * 5.41257 * 13 12 11 15 15 C 1.37881 * 120.00147 * 185.41218 * 13 12 11 16 16 N 1.31511 * 120.00002 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99736 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47494 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47123 * 119.99912 * 17 15 13 20 20 H 1.48492 * 109.47224 * 239.99756 * 17 15 13 21 21 C 1.46901 * 110.99867 * 280.73052 * 11 10 9 22 22 C 1.52999 * 109.47493 * 167.58400 * 21 11 10 23 23 C 1.53000 * 109.47438 * 287.58881 * 21 11 10 24 24 C 1.46761 * 111.29948 * 0.67173 * 9 7 6 25 25 H 1.08998 * 109.47470 * 300.00083 * 1 2 3 26 26 H 1.08996 * 109.47103 * 60.00160 * 1 2 3 27 27 H 1.09008 * 109.47063 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47470 * 239.99917 * 2 1 3 29 29 H 1.08998 * 109.47163 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47036 * 299.99880 * 3 2 1 31 31 H 1.09001 * 109.47196 * 60.00162 * 3 2 1 32 32 H 1.09001 * 110.48496 * 334.68269 * 6 4 2 33 33 H 1.08997 * 110.48453 * 212.03880 * 6 4 2 34 34 H 1.08996 * 109.47321 * 339.48477 * 10 9 7 35 35 H 1.09005 * 109.46837 * 219.48399 * 10 9 7 36 36 H 1.09001 * 109.47168 * 81.78369 * 12 11 10 37 37 H 1.08997 * 109.47177 * 321.79160 * 12 11 10 38 38 H 0.97003 * 120.00031 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.46911 * 47.58555 * 21 11 10 40 40 H 1.08997 * 109.46818 * 68.10983 * 22 21 11 41 41 H 1.08995 * 109.47387 * 188.12006 * 22 21 11 42 42 H 1.09006 * 109.46478 * 308.11780 * 22 21 11 43 43 H 1.08999 * 109.47512 * 51.34110 * 23 21 11 44 44 H 1.09001 * 109.47199 * 171.35132 * 23 21 11 45 45 H 1.09009 * 109.46564 * 291.34777 * 23 21 11 46 46 H 1.09003 * 110.24363 * 101.71812 * 24 9 7 47 47 H 1.08995 * 110.25073 * 223.71763 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7235 -0.2017 2.1537 6 6 1.5740 -2.1955 1.2661 7 6 2.7153 -2.9527 0.6239 8 8 2.6429 -4.0840 0.1927 9 7 3.8216 -2.1894 0.6009 10 6 5.1067 -2.6133 0.0397 11 7 5.2589 -2.0560 -1.3109 12 6 6.6759 -1.9723 -1.6893 13 6 6.8440 -0.9507 -2.7841 14 1 6.0009 -0.3546 -3.1007 15 6 8.0744 -0.7767 -3.3818 16 7 9.1012 -1.5021 -2.9960 17 14 8.2825 0.4893 -4.7395 18 1 6.9853 1.1692 -4.9856 19 1 9.2968 1.4933 -4.3289 20 1 8.7310 -0.1874 -5.9828 21 6 4.4974 -2.8397 -2.2926 22 6 4.4224 -2.0696 -3.6125 23 6 5.1937 -4.1823 -2.5243 24 6 3.5782 -0.8792 1.2157 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 0.6612 -2.3138 0.6821 33 1 1.4194 -2.5350 2.2903 34 1 5.1401 -3.7016 -0.0103 35 1 5.9166 -2.2537 0.6745 36 1 7.0151 -2.9453 -2.0450 37 1 7.2666 -1.6765 -0.8224 38 1 9.9669 -1.3794 -3.4162 39 1 3.4895 -3.0135 -1.9157 40 1 5.4144 -2.0210 -4.0616 41 1 3.7402 -2.5796 -4.2926 42 1 4.0593 -1.0593 -3.4235 43 1 5.3850 -4.6628 -1.5648 44 1 4.5540 -4.8235 -3.1307 45 1 6.1383 -4.0169 -3.0425 46 1 3.9846 -0.8558 2.2269 47 1 4.0242 -0.0899 0.6108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739841945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:41 Heat of formation + Delta-G solvation = -35.284714 kcal Electronic energy + Delta-G solvation = -24312.645573 eV Core-core repulsion = 21109.281397 eV Total energy + Delta-G solvation = -3203.364175 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.43898 -37.59296 -36.93743 -34.56685 -32.59719 -31.49148 -29.83687 -28.13889 -27.24648 -26.34186 -26.18366 -24.12753 -22.59582 -22.20700 -19.84926 -19.30922 -18.49155 -16.65527 -16.23439 -16.01531 -15.50685 -15.05138 -14.65641 -14.40000 -14.11300 -13.98057 -13.56362 -13.26802 -12.96294 -12.64402 -12.36341 -12.27322 -12.18579 -12.08402 -11.87577 -11.73457 -11.44764 -11.24237 -11.15150 -10.82602 -10.79201 -10.72212 -10.64855 -10.52272 -10.46627 -10.26682 -10.14839 -9.55640 -9.40609 -9.12719 -8.46762 -8.36615 -7.25100 -6.01648 -3.99403 2.86260 3.29863 3.38137 3.39572 3.43302 4.40839 4.43104 4.49528 4.61779 4.93863 4.98623 5.13092 5.31126 5.32344 5.38791 5.56530 5.58733 5.62951 5.64941 5.70696 5.80252 5.82738 5.86450 5.89117 5.93283 6.00179 6.09843 6.15375 6.16810 6.38300 6.40402 6.43856 6.60157 6.62180 6.77510 6.83665 7.01812 7.14527 7.43097 7.47432 7.50707 7.85453 8.11622 8.20006 8.46737 8.58608 9.06539 9.61343 11.08419 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017738 B = 0.005518 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.169233 B = 5072.647461 C = 5766.305522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.093 4.093 5 H 0.091 0.909 6 C -0.155 4.155 7 C 0.514 3.486 8 O -0.542 6.542 9 N -0.598 5.598 10 C 0.281 3.719 11 N -0.543 5.543 12 C 0.187 3.813 13 C -0.494 4.494 14 H 0.070 0.930 15 C 0.052 3.948 16 N -0.900 5.900 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.286 1.286 21 C 0.095 3.905 22 C -0.138 4.138 23 C -0.178 4.178 24 C 0.106 3.894 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.014 0.986 37 H 0.020 0.980 38 H 0.259 0.741 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.028 0.972 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.180 2.852 8.789 16.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.204 4.204 4 C -0.112 4.112 5 H 0.109 0.891 6 C -0.195 4.195 7 C 0.301 3.699 8 O -0.420 6.420 9 N -0.332 5.332 10 C 0.070 3.930 11 N -0.269 5.269 12 C 0.062 3.938 13 C -0.532 4.532 14 H 0.088 0.912 15 C -0.148 4.148 16 N -0.540 5.540 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.212 1.212 21 C -0.013 4.013 22 C -0.195 4.195 23 C -0.236 4.236 24 C -0.018 4.018 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.032 0.968 37 H 0.038 0.962 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.116 2.696 8.499 16.696 hybrid contribution 0.648 -0.078 -0.702 0.958 sum -13.468 2.617 7.797 15.781 Atomic orbital electron populations 1.21885 0.95330 1.01621 1.01653 1.21070 0.95373 0.96514 0.97776 1.21841 1.01901 0.95255 1.01375 1.22253 0.94733 0.94717 0.99518 0.89052 1.22501 0.98774 0.95463 1.02802 1.20861 0.84777 0.85807 0.78414 1.90702 1.83855 1.18164 1.49298 1.48433 1.11574 1.15799 1.57443 1.21868 0.83315 0.96844 0.90953 1.62117 1.15042 1.50134 0.99593 1.19860 0.80365 0.97307 0.96227 1.21289 0.95129 1.19125 1.17688 0.91236 1.24975 0.96010 0.96385 0.97455 1.69961 1.00844 1.40478 1.42716 0.86537 0.78128 0.81468 0.81895 1.19663 1.21191 1.21210 1.21382 0.95846 0.90789 0.93326 1.22034 1.03189 0.98899 0.95420 1.22391 1.02016 0.98307 1.00916 1.22202 0.95149 0.86399 0.98022 0.92774 0.92644 0.92597 0.90423 0.91771 0.92700 0.92996 0.88147 0.88428 0.92431 0.89985 0.96779 0.96170 0.93103 0.92394 0.89317 0.95285 0.93027 0.93748 0.93657 0.91034 0.91657 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.98 37.15 0.33 -0.97 16 2 C -0.09 -0.94 2.50 -90.62 -0.23 -1.16 16 3 C -0.15 -1.47 9.03 37.16 0.34 -1.14 16 4 C -0.09 -0.93 2.67 -88.89 -0.24 -1.16 16 5 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 6 C -0.16 -1.74 6.25 -26.74 -0.17 -1.91 16 7 C 0.51 8.26 7.22 -10.86 -0.08 8.18 16 8 O -0.54 -10.83 16.83 5.55 0.09 -10.73 16 9 N -0.60 -9.36 3.06 -175.80 -0.54 -9.90 16 10 C 0.28 5.16 5.68 -63.32 -0.36 4.80 16 11 N -0.54 -11.26 4.54 -231.97 -1.05 -12.31 16 12 C 0.19 4.58 4.52 -4.98 -0.02 4.56 16 13 C -0.49 -13.00 6.69 -34.44 -0.23 -13.23 16 14 H 0.07 1.84 6.19 -52.49 -0.32 1.51 16 15 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 16 N -0.90 -25.86 13.29 55.43 0.74 -25.12 16 17 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.10 1.94 2.87 -67.71 -0.19 1.74 16 22 C -0.14 -2.80 7.84 37.16 0.29 -2.51 16 23 C -0.18 -3.57 8.27 37.16 0.31 -3.26 16 24 C 0.11 1.29 6.79 -3.03 -0.02 1.27 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.49 6.22 -51.92 -0.32 0.17 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.72 6.48 -51.93 -0.34 0.39 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.10 1.08 5.94 -51.93 -0.31 0.77 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.13 5.79 -51.93 -0.30 0.83 16 35 H 0.08 1.45 7.50 -51.93 -0.39 1.06 16 36 H 0.01 0.38 5.43 -51.93 -0.28 0.10 16 37 H 0.02 0.52 7.51 -51.93 -0.39 0.13 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.06 1.20 6.45 -51.93 -0.33 0.87 16 40 H 0.09 2.02 5.80 -51.93 -0.30 1.72 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 43 H 0.04 0.88 6.38 -51.93 -0.33 0.55 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.07 1.57 6.42 -51.92 -0.33 1.24 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 1.23 6.24 -51.93 -0.32 0.90 16 LS Contribution 353.10 15.07 5.32 5.32 Total: -1.00 -29.90 353.10 -8.87 -38.77 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -8.04 Total: 1.35 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -0.37 Total: -3.47 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.85 Total: -47.34 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.90 -8.87 -38.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739841945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.481 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds