Wall clock time and date at job start Tue Mar 31 2020 06:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46988 * 2 1 4 4 C 1.53002 * 109.47122 * 119.99857 * 2 1 3 5 5 N 1.46898 * 109.47003 * 177.04234 * 4 2 1 6 6 C 1.46896 * 111.00244 * 287.89841 * 5 4 2 7 7 C 1.50694 * 109.47461 * 160.45043 * 6 5 4 8 8 H 1.08006 * 119.99878 * 4.70455 * 7 6 5 9 9 C 1.37877 * 120.00276 * 184.70455 * 7 6 5 10 10 N 1.31516 * 119.99729 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00064 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47207 * 59.99936 * 11 9 7 13 13 H 1.48503 * 109.47090 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47219 * 299.99415 * 11 9 7 15 15 C 1.46904 * 111.00190 * 163.94212 * 5 4 2 16 16 C 1.53007 * 109.47011 * 293.95758 * 15 5 4 17 17 C 1.52996 * 109.47094 * 179.97438 * 16 15 5 18 18 N 1.46497 * 109.47424 * 179.97438 * 17 16 15 19 19 C 1.46760 * 124.35235 * 89.99703 * 18 17 16 20 20 C 1.54475 * 105.55365 * 197.08103 * 19 18 17 21 21 C 1.54631 * 101.76208 * 334.54338 * 20 19 18 22 22 C 1.34619 * 124.46605 * 270.02613 * 18 17 16 23 23 O 1.21287 * 124.91437 * 359.55645 * 22 18 17 24 24 H 1.08999 * 109.47319 * 300.00000 * 1 2 3 25 25 H 1.09002 * 109.47168 * 60.00244 * 1 2 3 26 26 H 1.08998 * 109.46752 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47319 * 240.00000 * 2 1 3 28 28 H 1.08999 * 109.47090 * 59.99860 * 3 2 1 29 29 H 1.08998 * 109.47238 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46967 * 299.99879 * 3 2 1 31 31 H 1.08995 * 109.47208 * 57.04248 * 4 2 1 32 32 H 1.09001 * 109.47174 * 297.03998 * 4 2 1 33 33 H 1.09001 * 109.46825 * 280.45227 * 6 5 4 34 34 H 1.09003 * 109.46974 * 40.44603 * 6 5 4 35 35 H 0.97001 * 119.99996 * 180.02562 * 10 9 7 36 36 H 1.08990 * 109.47267 * 173.95384 * 15 5 4 37 37 H 1.08997 * 109.46621 * 53.95033 * 15 5 4 38 38 H 1.08999 * 109.47130 * 59.99180 * 16 15 5 39 39 H 1.09005 * 109.46743 * 299.99454 * 16 15 5 40 40 H 1.09005 * 109.47232 * 59.99430 * 17 16 15 41 41 H 1.09000 * 109.47420 * 300.00253 * 17 16 15 42 42 H 1.09005 * 110.24055 * 78.03368 * 19 18 17 43 43 H 1.09000 * 110.24103 * 316.12606 * 19 18 17 44 44 H 1.09000 * 110.97070 * 92.65538 * 20 19 18 45 45 H 1.08992 * 110.97321 * 216.42691 * 20 19 18 46 46 H 1.08998 * 110.48851 * 143.48180 * 21 20 19 47 47 H 1.09002 * 110.48196 * 266.11439 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5072 -0.7834 1.2141 6 6 3.9694 -1.7412 0.2007 7 6 5.4051 -1.4473 -0.1505 8 1 5.9458 -0.6805 0.3844 9 6 6.0284 -2.1572 -1.1548 10 7 5.3701 -3.0912 -1.8058 11 14 7.8079 -1.7923 -1.5906 12 1 8.6664 -2.0242 -0.4013 13 1 8.2404 -2.6864 -2.6946 14 1 7.9316 -0.3768 -2.0221 15 6 4.0522 -1.1135 2.5377 16 6 3.7595 0.0313 3.5097 17 6 4.3264 -0.3128 4.8885 18 7 4.0468 0.7836 5.8191 19 6 2.8384 0.8798 6.6463 20 6 2.7677 2.3527 7.1066 21 6 4.2540 2.7746 7.0424 22 6 4.8633 1.8336 6.0267 23 8 5.9322 2.0008 5.4784 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6340 -1.7324 1.2762 32 1 1.7206 -0.1777 2.1385 33 1 3.8921 -2.7540 0.5961 34 1 3.3512 -1.6517 -0.6925 35 1 5.8087 -3.5910 -2.5121 36 1 5.1296 -1.2587 2.4612 37 1 3.5872 -2.0288 2.9040 38 1 2.6819 0.1765 3.5862 39 1 4.2244 0.9467 3.1434 40 1 5.4040 -0.4583 4.8123 41 1 3.8613 -1.2281 5.2546 42 1 2.9183 0.2183 7.5090 43 1 1.9570 0.6260 6.0573 44 1 2.1636 2.9471 6.4211 45 1 2.3853 2.4253 8.1246 46 1 4.3431 3.8079 6.7069 47 1 4.7293 2.6461 8.0149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739915256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:08 Heat of formation + Delta-G solvation = -49.539184 kcal Electronic energy + Delta-G solvation = -23013.630879 eV Core-core repulsion = 19809.648584 eV Total energy + Delta-G solvation = -3203.982295 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.35361 -37.71506 -36.42385 -34.68077 -33.51823 -32.30620 -30.18047 -27.69623 -27.20192 -26.63119 -25.71482 -23.85109 -22.12304 -21.66775 -20.52017 -19.32553 -18.95562 -16.80657 -16.66999 -16.32495 -15.54278 -14.80080 -14.76522 -14.41625 -14.21530 -13.95036 -13.79095 -13.59269 -13.28668 -13.16047 -12.76889 -12.40952 -12.16399 -12.05411 -11.84874 -11.76658 -11.53618 -11.51023 -11.25237 -11.09642 -10.96181 -10.67478 -10.58743 -10.39867 -10.37700 -10.07644 -10.01495 -9.76397 -9.48787 -9.14831 -8.70108 -8.34889 -7.16680 -5.96456 -3.96901 2.58424 2.98432 3.39234 3.42244 3.46952 4.20430 4.25918 4.48260 4.56618 4.82046 4.87751 5.12640 5.22202 5.26871 5.36528 5.39194 5.42957 5.47343 5.50312 5.57041 5.60294 5.71425 5.77276 5.85375 5.90199 5.96423 6.10105 6.12433 6.25361 6.27674 6.30938 6.47812 6.52258 6.60540 6.68078 6.76633 6.92006 7.03970 7.12449 7.31575 7.39471 7.89103 8.17550 8.19323 8.28880 8.61694 9.11015 9.67125 11.14054 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013231 B = 0.004617 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.729923 B = 6062.920861 C = 7496.358912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.131 4.131 4 C 0.060 3.940 5 N -0.531 5.531 6 C 0.192 3.808 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.901 5.901 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.068 3.932 16 C -0.129 4.129 17 C 0.126 3.874 18 N -0.619 5.619 19 C 0.101 3.899 20 C -0.132 4.132 21 C -0.155 4.155 22 C 0.512 3.488 23 O -0.528 6.528 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.019 0.981 32 H 0.058 0.942 33 H -0.014 1.014 34 H 0.036 0.964 35 H 0.260 0.740 36 H 0.082 0.918 37 H 0.017 0.983 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.100 0.900 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.289 8.201 17.035 21.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.188 4.188 4 C -0.068 4.068 5 N -0.256 5.256 6 C 0.068 3.932 7 C -0.540 4.540 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.541 5.541 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.061 4.061 16 C -0.168 4.168 17 C 0.004 3.996 18 N -0.353 5.353 19 C -0.022 4.022 20 C -0.170 4.170 21 C -0.196 4.196 22 C 0.299 3.701 23 O -0.404 6.404 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.004 0.996 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.035 0.965 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.118 0.882 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.497 8.541 16.409 20.794 hybrid contribution 0.509 -0.821 -0.128 0.975 sum -8.988 7.720 16.281 20.136 Atomic orbital electron populations 1.21815 0.96386 1.00977 1.00912 1.21108 0.93670 0.97236 0.99254 1.21643 1.03082 0.94840 0.99272 1.22102 0.90081 0.97432 0.97210 1.62070 1.05630 1.52718 1.05142 1.19762 0.96171 0.87854 0.89462 1.21141 0.96321 1.18915 1.17648 0.91997 1.24964 0.98160 0.95229 0.96207 1.69948 1.36865 1.23453 1.23853 0.86603 0.84981 0.78193 0.77895 1.20306 1.21464 1.20189 1.21850 1.01426 0.93781 0.89055 1.21999 1.00467 1.00864 0.93459 1.21443 1.02082 0.87586 0.88477 1.48391 1.21248 1.23733 1.41944 1.22055 0.88248 0.97185 0.94761 1.22589 0.96021 0.95438 1.02930 1.22329 0.96389 1.00676 1.00171 1.20966 0.84218 0.82389 0.82503 1.90760 1.21664 1.75614 1.52345 0.93418 0.93070 0.93262 0.90506 0.94251 0.90744 0.94317 0.96301 0.92369 0.99597 0.94629 0.92998 0.89963 0.96453 0.92416 0.90927 0.89791 0.90658 0.91248 0.90367 0.89944 0.89323 0.88170 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.19 37.16 0.34 -1.63 16 2 C -0.09 -1.61 2.92 -90.61 -0.26 -1.88 16 3 C -0.13 -2.18 9.06 37.16 0.34 -1.84 16 4 C 0.06 1.08 4.24 -3.82 -0.02 1.06 16 5 N -0.53 -11.24 3.74 -236.08 -0.88 -12.13 16 6 C 0.19 4.99 4.59 -4.98 -0.02 4.96 16 7 C -0.50 -14.23 8.61 -34.44 -0.30 -14.52 16 8 H 0.06 1.77 7.65 -52.48 -0.40 1.37 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 11 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.07 1.28 4.79 -3.82 -0.02 1.26 16 16 C -0.13 -1.99 5.50 -26.73 -0.15 -2.14 16 17 C 0.13 1.67 5.94 -4.05 -0.02 1.65 16 18 N -0.62 -7.35 2.94 -172.36 -0.51 -7.85 16 19 C 0.10 0.77 7.34 -3.13 -0.02 0.75 16 20 C -0.13 -0.79 7.18 -25.10 -0.18 -0.97 16 21 C -0.16 -1.30 6.86 -26.74 -0.18 -1.49 16 22 C 0.51 6.96 8.03 -10.77 -0.09 6.87 16 23 O -0.53 -9.81 17.60 5.55 0.10 -9.71 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.54 6.47 -51.93 -0.34 1.20 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.45 7.69 -51.93 -0.40 1.05 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 32 H 0.06 0.93 5.94 -51.93 -0.31 0.62 16 33 H -0.01 -0.38 8.00 -51.93 -0.42 -0.80 16 34 H 0.04 0.99 6.22 -51.93 -0.32 0.66 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.08 1.73 7.31 -51.93 -0.38 1.35 16 37 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 38 H 0.06 0.82 6.28 -51.93 -0.33 0.50 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.08 1.26 7.93 -51.93 -0.41 0.85 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -32.93 371.96 -9.43 -42.35 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -8.77 Total: -2.78 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -0.68 Total: -6.42 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.65 Total: -46.26 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.10 Total: -9.71 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.93 -9.43 -42.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739915256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.187 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds