Wall clock time and date at job start Tue Mar 31 2020 06:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47125 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00269 * 2 1 3 5 5 N 1.46906 * 109.47284 * 178.35934 * 4 2 1 6 6 C 1.46905 * 110.99787 * 286.28565 * 5 4 2 7 7 C 1.50698 * 109.46834 * 75.55540 * 6 5 4 8 8 H 1.08006 * 120.00401 * 5.29160 * 7 6 5 9 9 C 1.37875 * 120.00179 * 185.28324 * 7 6 5 10 10 N 1.31511 * 120.00331 * 180.02562 * 9 7 6 11 11 Si 1.86810 * 119.99645 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.46708 * 89.99668 * 11 9 7 13 13 H 1.48493 * 109.47100 * 209.99903 * 11 9 7 14 14 H 1.48496 * 109.47166 * 329.99925 * 11 9 7 15 15 C 1.46898 * 111.00052 * 162.33188 * 5 4 2 16 16 C 1.50698 * 109.47360 * 287.24306 * 15 5 4 17 17 O 1.21283 * 119.99768 * 353.74253 * 16 15 5 18 18 N 1.34777 * 120.00317 * 173.75087 * 16 15 5 19 19 C 1.46498 * 120.00033 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.46798 * 180.02562 * 19 18 16 21 21 C 1.53781 * 113.61842 * 85.86329 * 20 19 18 22 22 C 1.54053 * 86.98773 * 140.01766 * 21 20 19 23 23 C 1.53783 * 87.07538 * 334.56875 * 22 21 20 24 24 H 1.09009 * 109.46567 * 299.99624 * 1 2 3 25 25 H 1.08994 * 109.47357 * 59.99469 * 1 2 3 26 26 H 1.08994 * 109.47256 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46567 * 240.00376 * 2 1 3 28 28 H 1.08999 * 109.46934 * 184.38886 * 3 2 1 29 29 H 1.09007 * 109.47098 * 304.38781 * 3 2 1 30 30 H 1.08997 * 109.47505 * 64.38968 * 3 2 1 31 31 H 1.09004 * 109.47173 * 58.36007 * 4 2 1 32 32 H 1.08999 * 109.47463 * 298.36032 * 4 2 1 33 33 H 1.09002 * 109.46824 * 195.55714 * 6 5 4 34 34 H 1.08993 * 109.47153 * 315.55651 * 6 5 4 35 35 H 0.97005 * 119.99784 * 180.02562 * 10 9 7 36 36 H 1.09003 * 109.47018 * 167.23512 * 15 5 4 37 37 H 1.09005 * 109.47096 * 47.24065 * 15 5 4 38 38 H 0.97001 * 119.99341 * 359.97438 * 18 16 15 39 39 H 1.09003 * 109.47047 * 59.99974 * 19 18 16 40 40 H 1.09000 * 109.47240 * 299.99609 * 19 18 16 41 41 H 1.08998 * 112.84931 * 314.66196 * 20 19 18 42 42 H 1.08994 * 113.61427 * 254.61175 * 21 20 19 43 43 H 1.09008 * 113.61035 * 25.51408 * 21 20 19 44 44 H 1.09003 * 113.61691 * 220.02439 * 22 21 20 45 45 H 1.08998 * 113.61201 * 89.11333 * 22 21 20 46 46 H 1.09001 * 113.61695 * 270.87818 * 23 22 21 47 47 H 1.09002 * 113.68978 * 139.98688 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5086 -0.7557 1.2294 6 6 3.9992 -1.7247 0.2403 7 6 3.8431 -1.1516 -1.1446 8 1 3.5020 -0.1349 -1.2731 9 6 4.1358 -1.9250 -2.2479 10 7 4.0000 -1.4247 -3.4565 11 14 4.7253 -3.6837 -2.0257 12 1 3.5558 -4.5986 -2.0037 13 1 5.6206 -4.0517 -3.1518 14 1 5.4679 -3.7988 -0.7449 15 6 4.0463 -1.0483 2.5648 16 6 3.8732 0.1579 3.4514 17 8 3.4584 1.1982 2.9859 18 7 4.1796 0.0807 4.7616 19 6 4.0118 1.2535 5.6234 20 6 4.4280 0.8998 7.0526 21 6 5.9350 1.0606 7.3131 22 6 5.5529 1.6387 8.6890 23 6 4.2096 2.0424 8.0584 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 3.1271 1.4434 -0.0786 29 1 1.6138 1.9785 -0.8481 30 1 1.7423 1.9331 0.9267 31 1 1.6529 -1.7401 1.2639 32 1 1.7010 -0.1908 2.1389 33 1 5.0517 -1.9359 0.4297 34 1 3.4237 -2.6470 0.3189 35 1 4.2057 -1.9691 -4.2326 36 1 5.1058 -1.2914 2.4845 37 1 3.5108 -1.8949 2.9945 38 1 4.5111 -0.7514 5.1339 39 1 2.9670 1.5640 5.6151 40 1 4.6358 2.0676 5.2547 41 1 4.0271 -0.0575 7.3855 42 1 6.4719 0.1138 7.3697 43 1 6.4173 1.7832 6.6546 44 1 6.1659 2.4878 8.9915 45 1 5.4594 0.8834 9.4692 46 1 4.2209 3.0328 7.6034 47 1 3.3535 1.8882 8.7153 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739915449.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:45 Heat of formation + Delta-G solvation = -18.523862 kcal Electronic energy + Delta-G solvation = -23025.747937 eV Core-core repulsion = 19823.110567 eV Total energy + Delta-G solvation = -3202.637370 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.79414 -38.79686 -37.01878 -34.18479 -33.53782 -32.44488 -29.40648 -27.99140 -26.45465 -26.16057 -25.90732 -23.97279 -22.68628 -20.80972 -20.25931 -19.45709 -19.02195 -17.08295 -16.46444 -16.27847 -15.61366 -15.18876 -14.79597 -14.68694 -14.24873 -13.95139 -13.70554 -13.32816 -13.05620 -12.75787 -12.60201 -12.55780 -12.28867 -12.21142 -11.93068 -11.56051 -11.44238 -11.18919 -11.04344 -10.90950 -10.70286 -10.63526 -10.54654 -10.41510 -10.02379 -9.86813 -9.80341 -9.68735 -9.19841 -8.91227 -8.86566 -8.45279 -7.30663 -6.00028 -3.94698 3.04935 3.27426 3.29439 3.37365 3.37561 4.28464 4.33965 4.40834 4.44540 4.54847 4.82069 4.99511 5.16516 5.24230 5.29103 5.41297 5.44378 5.53611 5.58681 5.60958 5.67896 5.71958 5.80902 5.83737 5.92678 5.93737 6.14840 6.16625 6.22821 6.34837 6.53066 6.59607 6.67692 6.75907 6.83816 6.86452 6.99417 7.12369 7.55102 7.56163 7.69174 7.74744 7.96529 8.10168 8.61925 8.71365 9.14603 9.60973 11.11605 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021206 B = 0.003789 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.033866 B = 7388.951310 C = 8254.036290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C -0.117 4.117 4 C 0.084 3.916 5 N -0.507 5.507 6 C 0.163 3.837 7 C -0.508 4.508 8 H 0.102 0.898 9 C 0.068 3.932 10 N -0.898 5.898 11 Si 0.870 3.130 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.270 1.270 15 C 0.035 3.965 16 C 0.509 3.491 17 O -0.508 6.508 18 N -0.742 5.742 19 C 0.132 3.868 20 C -0.124 4.124 21 C -0.137 4.137 22 C -0.143 4.143 23 C -0.132 4.132 24 H 0.038 0.962 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.124 0.876 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.035 0.965 31 H 0.016 0.984 32 H 0.052 0.948 33 H 0.024 0.976 34 H -0.013 1.013 35 H 0.263 0.737 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.396 0.604 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.310 1.837 22.132 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 C -0.175 4.175 4 C -0.044 4.044 5 N -0.231 5.231 6 C 0.037 3.963 7 C -0.546 4.546 8 H 0.120 0.880 9 C -0.133 4.133 10 N -0.537 5.537 11 Si 0.698 3.302 12 H -0.205 1.205 13 H -0.213 1.213 14 H -0.195 1.195 15 C -0.097 4.097 16 C 0.295 3.705 17 O -0.381 6.381 18 N -0.397 5.397 19 C 0.009 3.991 20 C -0.143 4.143 21 C -0.174 4.174 22 C -0.181 4.181 23 C -0.170 4.170 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.142 0.858 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.005 0.995 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.229 0.771 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.188 3.043 21.419 21.635 hybrid contribution 0.231 -2.314 0.544 2.388 sum 0.419 0.729 21.963 21.979 Atomic orbital electron populations 1.21822 0.97532 1.00255 1.00342 1.21580 0.92605 0.97713 1.01005 1.21507 1.02621 0.94887 0.98456 1.21956 0.86988 0.97075 0.98366 1.61620 1.08214 1.51320 1.01897 1.20301 0.94551 0.89112 0.92376 1.21309 1.43846 1.02214 0.87226 0.88016 1.24908 0.95455 0.97708 0.95268 1.69886 1.49378 1.36773 0.97647 0.86947 0.79128 0.86259 0.77890 1.20484 1.21312 1.19456 1.21968 1.02098 0.93548 0.92070 1.20932 0.77105 0.90900 0.81552 1.90702 1.42919 1.30798 1.73674 1.46067 1.69757 1.14679 1.09198 1.21257 1.01262 0.88619 0.88010 1.22812 0.97162 0.99895 0.94411 1.23048 0.95676 1.01506 0.97191 1.22859 0.97386 1.00933 0.96897 1.22871 0.97856 0.98545 0.97714 0.94294 0.93202 0.93824 0.85849 0.91134 0.95194 0.94545 0.96543 0.92938 0.95831 0.99539 0.92734 0.88495 0.93436 0.77119 0.91845 0.91646 0.88797 0.91430 0.89794 0.91405 0.90268 0.89732 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.19 37.16 0.34 -2.20 16 2 C -0.11 -2.35 2.40 -90.63 -0.22 -2.57 16 3 C -0.12 -2.52 8.45 37.16 0.31 -2.21 16 4 C 0.08 1.70 3.98 -3.82 -0.02 1.69 16 5 N -0.51 -10.69 3.43 -237.51 -0.82 -11.50 16 6 C 0.16 3.84 3.83 -4.97 -0.02 3.82 16 7 C -0.51 -13.95 7.48 -34.44 -0.26 -14.21 16 8 H 0.10 3.01 4.89 -52.48 -0.26 2.75 16 9 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 10 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 11 Si 0.87 21.09 27.37 -169.99 -4.65 16.44 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.27 -6.25 6.70 56.52 0.38 -5.87 16 15 C 0.04 0.58 5.46 -4.98 -0.03 0.56 16 16 C 0.51 8.21 7.25 -10.99 -0.08 8.13 16 17 O -0.51 -10.25 15.42 5.56 0.09 -10.17 16 18 N -0.74 -8.59 5.56 -60.30 -0.33 -8.92 16 19 C 0.13 1.40 5.50 -4.04 -0.02 1.37 16 20 C -0.12 -0.93 3.75 -89.81 -0.34 -1.27 16 21 C -0.14 -0.98 7.65 -25.78 -0.20 -1.17 16 22 C -0.14 -0.90 8.09 -25.77 -0.21 -1.11 16 23 C -0.13 -0.90 7.64 -25.92 -0.20 -1.10 16 24 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.12 3.09 4.77 -51.92 -0.25 2.84 16 28 H 0.07 1.70 6.87 -51.93 -0.36 1.35 16 29 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.02 0.33 7.78 -51.93 -0.40 -0.08 16 32 H 0.05 1.03 6.66 -51.93 -0.35 0.69 16 33 H 0.02 0.56 7.07 -51.93 -0.37 0.19 16 34 H -0.01 -0.31 6.90 -51.93 -0.36 -0.67 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.10 1.49 7.67 -51.93 -0.40 1.09 16 37 H 0.05 0.69 8.04 -51.93 -0.42 0.27 16 38 H 0.40 3.45 8.47 -40.82 -0.35 3.11 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.66 7.92 -51.92 -0.41 0.25 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -31.56 363.64 -9.03 -40.59 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -8.55 Total: 2.76 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -1.02 Total: -8.44 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.38 Total: -46.67 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.65 Total: 16.44 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.56 -9.03 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739915449.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.068 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds