Wall clock time and date at job start Tue Mar 31 2020 06:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47125 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00269 * 2 1 3 5 5 N 1.46906 * 109.47284 * 178.35934 * 4 2 1 6 6 C 1.46905 * 110.99787 * 286.28565 * 5 4 2 7 7 C 1.50698 * 109.46834 * 75.55540 * 6 5 4 8 8 H 1.08006 * 120.00401 * 5.29160 * 7 6 5 9 9 C 1.37875 * 120.00179 * 185.28324 * 7 6 5 10 10 N 1.31511 * 120.00331 * 180.02562 * 9 7 6 11 11 Si 1.86810 * 119.99645 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.46708 * 89.99668 * 11 9 7 13 13 H 1.48493 * 109.47100 * 209.99903 * 11 9 7 14 14 H 1.48496 * 109.47166 * 329.99925 * 11 9 7 15 15 C 1.46898 * 111.00052 * 162.33188 * 5 4 2 16 16 C 1.50698 * 109.47360 * 287.24306 * 15 5 4 17 17 O 1.21283 * 119.99768 * 353.74253 * 16 15 5 18 18 N 1.34777 * 120.00317 * 173.75087 * 16 15 5 19 19 C 1.46498 * 120.00033 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.46798 * 180.02562 * 19 18 16 21 21 C 1.53781 * 113.61842 * 85.86329 * 20 19 18 22 22 C 1.54053 * 86.98773 * 140.01766 * 21 20 19 23 23 C 1.53783 * 87.07538 * 334.56875 * 22 21 20 24 24 H 1.09009 * 109.46567 * 299.99624 * 1 2 3 25 25 H 1.08994 * 109.47357 * 59.99469 * 1 2 3 26 26 H 1.08994 * 109.47256 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46567 * 240.00376 * 2 1 3 28 28 H 1.08999 * 109.46934 * 184.38886 * 3 2 1 29 29 H 1.09007 * 109.47098 * 304.38781 * 3 2 1 30 30 H 1.08997 * 109.47505 * 64.38968 * 3 2 1 31 31 H 1.09004 * 109.47173 * 58.36007 * 4 2 1 32 32 H 1.08999 * 109.47463 * 298.36032 * 4 2 1 33 33 H 1.09002 * 109.46824 * 195.55714 * 6 5 4 34 34 H 1.08993 * 109.47153 * 315.55651 * 6 5 4 35 35 H 0.97005 * 119.99784 * 180.02562 * 10 9 7 36 36 H 1.09003 * 109.47018 * 167.23512 * 15 5 4 37 37 H 1.09005 * 109.47096 * 47.24065 * 15 5 4 38 38 H 0.97001 * 119.99341 * 359.97438 * 18 16 15 39 39 H 1.09003 * 109.47047 * 59.99974 * 19 18 16 40 40 H 1.09000 * 109.47240 * 299.99609 * 19 18 16 41 41 H 1.08998 * 112.84931 * 314.66196 * 20 19 18 42 42 H 1.08994 * 113.61427 * 254.61175 * 21 20 19 43 43 H 1.09008 * 113.61035 * 25.51408 * 21 20 19 44 44 H 1.09003 * 113.61691 * 220.02439 * 22 21 20 45 45 H 1.08998 * 113.61201 * 89.11333 * 22 21 20 46 46 H 1.09001 * 113.61695 * 270.87818 * 23 22 21 47 47 H 1.09002 * 113.68978 * 139.98688 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5086 -0.7557 1.2294 6 6 3.9992 -1.7247 0.2403 7 6 3.8431 -1.1516 -1.1446 8 1 3.5020 -0.1349 -1.2731 9 6 4.1358 -1.9250 -2.2479 10 7 4.0000 -1.4247 -3.4565 11 14 4.7253 -3.6837 -2.0257 12 1 3.5558 -4.5986 -2.0037 13 1 5.6206 -4.0517 -3.1518 14 1 5.4679 -3.7988 -0.7449 15 6 4.0463 -1.0483 2.5648 16 6 3.8732 0.1579 3.4514 17 8 3.4584 1.1982 2.9859 18 7 4.1796 0.0807 4.7616 19 6 4.0118 1.2535 5.6234 20 6 4.4280 0.8998 7.0526 21 6 5.9350 1.0606 7.3131 22 6 5.5529 1.6387 8.6890 23 6 4.2096 2.0424 8.0584 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 3.1271 1.4434 -0.0786 29 1 1.6138 1.9785 -0.8481 30 1 1.7423 1.9331 0.9267 31 1 1.6529 -1.7401 1.2639 32 1 1.7010 -0.1908 2.1389 33 1 5.0517 -1.9359 0.4297 34 1 3.4237 -2.6470 0.3189 35 1 4.2057 -1.9691 -4.2326 36 1 5.1058 -1.2914 2.4845 37 1 3.5108 -1.8949 2.9945 38 1 4.5111 -0.7514 5.1339 39 1 2.9670 1.5640 5.6151 40 1 4.6358 2.0676 5.2547 41 1 4.0271 -0.0575 7.3855 42 1 6.4719 0.1138 7.3697 43 1 6.4173 1.7832 6.6546 44 1 6.1659 2.4878 8.9915 45 1 5.4594 0.8834 9.4692 46 1 4.2209 3.0328 7.6034 47 1 3.3535 1.8882 8.7153 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739915449.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:45 Heat of formation + Delta-G solvation = -39.229178 kcal Electronic energy + Delta-G solvation = -23026.645787 eV Core-core repulsion = 19823.110567 eV Total energy + Delta-G solvation = -3203.535220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.89738 -39.67544 -38.55132 -35.29057 -35.18383 -34.50476 -30.81996 -29.46090 -27.82294 -27.76436 -26.46362 -25.58961 -23.60778 -22.46398 -21.41507 -20.75933 -20.17736 -18.84609 -17.87514 -17.25994 -16.77330 -16.35883 -16.23763 -16.17889 -15.45453 -15.28689 -15.09930 -14.57203 -14.53913 -14.28384 -14.15069 -13.95514 -13.31271 -13.24272 -13.07923 -12.92909 -12.83676 -12.72063 -12.52898 -12.44387 -12.15901 -11.85012 -11.64970 -11.49918 -11.47369 -11.44621 -11.29286 -11.13196 -10.89372 -10.60764 -10.51680 -9.96397 -8.90500 -8.14873 -6.13759 1.38715 1.40256 1.49933 1.79559 2.20874 2.42252 3.15941 3.29471 3.67860 3.73413 3.82990 4.00313 4.03812 4.18874 4.26195 4.36506 4.40392 4.42778 4.53669 4.56640 4.70335 4.77058 4.78719 4.89074 4.89803 4.90115 4.94628 5.02149 5.05268 5.09005 5.12417 5.13862 5.18216 5.29099 5.33456 5.43396 5.54525 5.64481 5.66007 5.74484 5.91277 6.11965 6.42091 6.64688 6.80712 6.95864 7.43838 7.46197 9.00076 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021206 B = 0.003789 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.033866 B = 7388.951310 C = 8254.036290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 C -0.101 4.101 4 C 0.092 3.908 5 N -0.530 5.530 6 C 0.172 3.828 7 C -0.506 4.506 8 H 0.066 0.934 9 C 0.007 3.993 10 N -0.949 5.949 11 Si 0.938 3.062 12 H -0.272 1.272 13 H -0.290 1.290 14 H -0.246 1.246 15 C 0.032 3.968 16 C 0.510 3.490 17 O -0.557 6.557 18 N -0.720 5.720 19 C 0.134 3.866 20 C -0.116 4.116 21 C -0.139 4.139 22 C -0.138 4.138 23 C -0.134 4.134 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.042 0.958 31 H 0.023 0.977 32 H 0.060 0.940 33 H 0.030 0.970 34 H -0.007 1.007 35 H 0.262 0.738 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.413 0.587 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.110 0.890 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.403 -0.054 25.247 25.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 C -0.159 4.159 4 C -0.036 4.036 5 N -0.254 5.254 6 C 0.045 3.955 7 C -0.544 4.544 8 H 0.084 0.916 9 C -0.190 4.190 10 N -0.591 5.591 11 Si 0.762 3.238 12 H -0.198 1.198 13 H -0.216 1.216 14 H -0.170 1.170 15 C -0.099 4.099 16 C 0.296 3.704 17 O -0.434 6.434 18 N -0.375 5.375 19 C 0.010 3.990 20 C -0.135 4.135 21 C -0.176 4.176 22 C -0.175 4.175 23 C -0.172 4.172 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.011 0.989 35 H 0.071 0.929 36 H 0.129 0.871 37 H 0.097 0.903 38 H 0.250 0.750 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.128 0.872 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.109 0.891 46 H 0.096 0.904 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.300 1.128 24.612 24.640 hybrid contribution 0.193 -1.603 -0.366 1.656 sum 0.493 -0.475 24.247 24.256 Atomic orbital electron populations 1.21735 0.94864 1.01301 1.01330 1.21459 0.94932 0.96747 0.99896 1.21317 1.00204 0.95679 0.98673 1.21870 0.86714 0.97208 0.97809 1.61417 1.08792 1.51162 1.04027 1.20070 0.94995 0.89435 0.90984 1.21574 1.42296 1.00946 0.89623 0.91561 1.25757 0.95977 1.02469 0.94774 1.70054 1.51625 1.38742 0.98700 0.85856 0.78843 0.80463 0.78609 1.19758 1.21580 1.16995 1.22070 1.03101 0.94757 0.89954 1.20897 0.76740 0.90006 0.82736 1.90692 1.45548 1.32325 1.74842 1.45864 1.67960 1.15829 1.07803 1.21311 1.00369 0.87804 0.89534 1.22808 0.97552 1.00873 0.92250 1.23048 0.95252 1.01742 0.97586 1.22854 0.96742 1.01252 0.96642 1.22896 0.98696 0.97971 0.97604 0.92461 0.93057 0.92753 0.90014 0.94598 0.95067 0.93936 0.95867 0.92131 0.95158 0.98903 0.92871 0.87085 0.90324 0.75017 0.92941 0.93247 0.87238 0.90557 0.90949 0.91195 0.89063 0.90387 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 9.19 71.98 0.66 -4.03 16 2 C -0.11 -4.79 2.40 -10.80 -0.03 -4.81 16 3 C -0.10 -4.50 8.45 71.98 0.61 -3.89 16 4 C 0.09 3.62 3.98 86.30 0.34 3.97 16 5 N -0.53 -21.90 3.43 -905.36 -3.11 -25.01 16 6 C 0.17 7.93 3.83 85.56 0.33 8.26 16 7 C -0.51 -28.42 7.48 25.60 0.19 -28.23 16 8 H 0.07 4.13 4.89 -2.91 -0.01 4.12 16 9 C 0.01 0.38 5.47 84.65 0.46 0.84 16 10 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 11 Si 0.94 43.25 27.37 68.60 1.88 45.12 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 13 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 14 H -0.25 -10.33 6.70 99.48 0.67 -9.67 16 15 C 0.03 0.99 5.46 85.56 0.47 1.46 16 16 C 0.51 15.65 7.25 87.66 0.64 16.29 16 17 O -0.56 -22.41 15.42 -3.04 -0.05 -22.46 16 18 N -0.72 -15.05 5.56 -463.06 -2.57 -17.62 16 19 C 0.13 2.64 5.50 86.38 0.48 3.11 16 20 C -0.12 -1.47 3.75 -10.27 -0.04 -1.51 16 21 C -0.14 -1.67 7.65 31.21 0.24 -1.43 16 22 C -0.14 -1.39 8.09 31.21 0.25 -1.14 16 23 C -0.13 -1.55 7.64 31.12 0.24 -1.32 16 24 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.08 4.25 4.77 -2.38 -0.01 4.23 16 28 H 0.03 1.81 6.87 -2.39 -0.02 1.79 16 29 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.02 0.88 7.78 -2.39 -0.02 0.86 16 32 H 0.06 2.30 6.66 -2.39 -0.02 2.28 16 33 H 0.03 1.36 7.07 -2.39 -0.02 1.34 16 34 H -0.01 -0.30 6.90 -2.39 -0.02 -0.32 16 35 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 36 H 0.11 3.08 7.67 -2.39 -0.02 3.06 16 37 H 0.08 1.96 8.04 -2.38 -0.02 1.94 16 38 H 0.41 5.79 8.47 -92.71 -0.79 5.01 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 1.15 7.87 -2.39 -0.02 1.14 16 41 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 1.05 7.92 -2.38 -0.02 1.03 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 45 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.08 1.01 8.10 -2.39 -0.02 0.99 16 47 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -70.90 363.64 1.39 -69.51 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.11 Total: 21.75 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 4.84 Total: -12.42 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -5.38 Total: -101.49 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.05 Total: -22.46 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.88 Total: 45.12 kcal Total: -70.90 1.39 -69.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739915449.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.280 kcal (2) G-P(sol) polarization free energy of solvation -70.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds