Wall clock time and date at job start Tue Mar 31 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47022 * 2 1 4 4 C 1.53001 * 109.46791 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.86070 * 51.21181 * 4 3 2 6 6 C 1.54627 * 111.00410 * 287.39403 * 4 3 2 7 7 C 1.51287 * 104.25676 * 266.45255 * 6 4 3 8 8 O 1.21281 * 124.94308 * 164.00875 * 7 6 4 9 9 N 1.34415 * 110.11572 * 344.14314 * 7 6 4 10 10 C 1.46494 * 124.35094 * 179.44190 * 9 7 6 11 11 N 1.46902 * 109.47053 * 269.69475 * 10 9 7 12 12 C 1.46894 * 111.00283 * 204.99871 * 11 10 9 13 13 C 1.50702 * 109.47265 * 75.88344 * 12 11 10 14 14 H 1.08004 * 119.99735 * 355.37310 * 13 12 11 15 15 C 1.37870 * 120.00530 * 175.37661 * 13 12 11 16 16 N 1.31511 * 120.00159 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99984 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.46864 * 90.00433 * 17 15 13 19 19 H 1.48498 * 109.47398 * 210.00299 * 17 15 13 20 20 H 1.48504 * 109.47167 * 330.00756 * 17 15 13 21 21 C 1.46904 * 110.99726 * 81.04894 * 11 10 9 22 22 C 1.52993 * 109.47171 * 73.02633 * 21 11 10 23 23 C 1.52998 * 109.47197 * 193.02861 * 21 11 10 24 24 C 1.46768 * 111.29811 * 359.17045 * 9 7 6 25 25 H 1.08999 * 109.46537 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47020 * 299.99944 * 1 2 3 27 27 H 1.08994 * 109.46605 * 59.99911 * 1 2 3 28 28 H 1.08992 * 109.46872 * 239.99475 * 2 1 3 29 29 H 1.09002 * 109.46559 * 119.99768 * 2 1 3 30 30 H 1.09001 * 109.47177 * 60.00152 * 3 2 1 31 31 H 1.09000 * 109.46838 * 299.99640 * 3 2 1 32 32 H 1.09004 * 110.48228 * 25.34080 * 6 4 3 33 33 H 1.08992 * 110.49069 * 147.85857 * 6 4 3 34 34 H 1.09009 * 109.47478 * 149.70093 * 10 9 7 35 35 H 1.09002 * 109.47423 * 29.69708 * 10 9 7 36 36 H 1.08996 * 109.47405 * 315.88704 * 12 11 10 37 37 H 1.08995 * 109.47425 * 195.88109 * 12 11 10 38 38 H 0.97003 * 120.00271 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.47014 * 313.02655 * 21 11 10 40 40 H 1.08996 * 109.47134 * 60.00096 * 22 21 11 41 41 H 1.09004 * 109.47403 * 180.02562 * 22 21 11 42 42 H 1.09002 * 109.47483 * 299.99810 * 22 21 11 43 43 H 1.09000 * 109.47103 * 54.39654 * 23 21 11 44 44 H 1.08999 * 109.47211 * 174.40343 * 23 21 11 45 45 H 1.09006 * 109.47142 * 294.40341 * 23 21 11 46 46 H 1.09000 * 110.24506 * 136.28435 * 24 9 7 47 47 H 1.08997 * 110.24755 * 258.28248 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9585 0.8042 -0.7930 6 6 4.1237 1.0111 1.3785 7 6 4.3417 2.3135 2.1167 8 8 4.5046 2.4143 3.3143 9 7 4.3256 3.3430 1.2526 10 6 4.4950 4.7467 1.6360 11 7 3.1813 5.3373 1.9249 12 6 3.2047 6.7933 1.7317 13 6 3.1810 7.1049 0.2575 14 1 3.2271 6.3032 -0.4647 15 6 3.1007 8.4134 -0.1694 16 7 3.0796 8.6853 -1.4559 17 14 3.0204 9.8001 1.0797 18 1 4.3968 10.2521 1.4065 19 1 2.2489 10.9344 0.5111 20 1 2.3521 9.3161 2.3143 21 6 2.7365 4.9934 3.2821 22 6 3.5533 5.7877 4.3031 23 6 1.2538 5.3384 3.4356 24 6 4.1230 2.8794 -0.1251 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 3.3986 0.3888 1.9031 33 1 5.0675 0.4788 1.2608 34 1 4.9667 5.2923 0.8187 35 1 5.1239 4.8074 2.5242 36 1 4.1115 7.2042 2.1754 37 1 2.3323 7.2375 2.2109 38 1 3.0235 9.6059 -1.7563 39 1 2.8807 3.9265 3.4523 40 1 3.4091 6.8546 4.1329 41 1 3.2236 5.5322 5.3102 42 1 4.6096 5.5419 4.1938 43 1 0.6834 4.8501 2.6455 44 1 0.8990 4.9930 4.4066 45 1 1.1227 6.4182 3.3640 46 1 3.4018 3.5177 -0.6356 47 1 5.0703 2.8733 -0.6642 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743359698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:46 Heat of formation + Delta-G solvation = -42.765501 kcal Electronic energy + Delta-G solvation = -24022.158876 eV Core-core repulsion = 20818.470310 eV Total energy + Delta-G solvation = -3203.688566 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.33364 -37.63688 -36.68349 -34.61667 -32.74932 -32.02316 -30.43882 -28.02316 -27.55919 -26.64738 -25.92971 -24.04832 -22.09748 -21.75988 -20.39579 -19.32560 -18.49719 -17.05116 -16.39315 -16.15202 -15.38750 -15.22227 -14.72758 -14.36192 -13.96097 -13.74381 -13.67287 -13.40464 -13.13139 -12.90367 -12.72571 -12.60742 -12.43555 -12.20774 -11.87056 -11.67120 -11.48204 -11.46174 -11.38774 -11.08342 -10.86514 -10.75278 -10.70667 -10.60225 -10.52437 -10.43743 -9.92434 -9.83403 -9.42329 -9.33601 -8.60924 -8.39461 -7.39373 -6.08939 -4.05759 2.87720 3.25678 3.33789 3.35734 3.44856 4.39007 4.47471 4.54111 4.71081 4.80896 4.98476 5.07054 5.23132 5.24342 5.32271 5.48244 5.56504 5.59973 5.63729 5.68128 5.76851 5.78611 5.85701 5.89111 5.93472 5.96993 6.04172 6.08634 6.10436 6.18781 6.26844 6.28184 6.30238 6.40912 6.42858 6.63259 6.76154 6.78380 6.91096 6.95754 7.53467 7.62615 7.92349 8.00864 8.52914 8.63872 8.98862 9.53566 11.04085 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016174 B = 0.005369 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.750754 B = 5213.397014 C = 5727.573251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.112 4.112 4 C -0.098 4.098 5 H 0.092 0.908 6 C -0.152 4.152 7 C 0.514 3.486 8 O -0.545 6.545 9 N -0.596 5.596 10 C 0.291 3.709 11 N -0.532 5.532 12 C 0.164 3.836 13 C -0.507 4.507 14 H 0.079 0.921 15 C 0.070 3.930 16 N -0.900 5.900 17 Si 0.871 3.129 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.070 3.930 22 C -0.178 4.178 23 C -0.137 4.137 24 C 0.107 3.893 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.052 0.948 36 H -0.014 1.014 37 H 0.036 0.964 38 H 0.263 0.737 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.055 0.945 46 H 0.091 0.909 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.482 -15.189 3.332 15.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.149 4.149 4 C -0.117 4.117 5 H 0.110 0.890 6 C -0.192 4.192 7 C 0.301 3.699 8 O -0.424 6.424 9 N -0.329 5.329 10 C 0.080 3.920 11 N -0.257 5.257 12 C 0.037 3.963 13 C -0.545 4.545 14 H 0.097 0.903 15 C -0.131 4.131 16 N -0.539 5.539 17 Si 0.699 3.301 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.039 4.039 22 C -0.237 4.237 23 C -0.195 4.195 24 C -0.016 4.016 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.070 0.930 36 H 0.004 0.996 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.109 0.891 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.736 -15.068 3.500 15.487 hybrid contribution 0.494 1.302 1.042 1.739 sum -0.242 -13.766 4.542 14.498 Atomic orbital electron populations 1.21770 0.95961 1.01216 1.02106 1.21544 0.95850 0.96959 1.01693 1.21629 0.93316 0.96638 1.03338 1.22203 0.96450 0.96259 0.96816 0.88969 1.22439 1.03240 0.96773 0.96778 1.20862 0.75620 0.86839 0.86542 1.90673 1.51162 1.86584 1.13946 1.48423 1.69989 1.06686 1.07821 1.21830 0.90967 0.79117 1.00106 1.61925 1.26384 1.13992 1.23418 1.20178 0.95506 0.82426 0.98157 1.21033 1.50026 0.93348 0.90092 0.90313 1.24866 0.94873 0.98469 0.94936 1.69883 1.51005 1.19521 1.13490 0.86929 0.78494 0.82458 0.82268 1.20326 1.21182 1.19141 1.21777 0.94629 0.99719 0.87742 1.22409 1.00571 1.01086 0.99662 1.21782 0.95659 1.01775 1.00245 1.22162 1.01132 0.94610 0.83729 0.93102 0.92700 0.92627 0.92121 0.92185 0.91345 0.91008 0.88438 0.88515 0.88044 0.93012 0.99583 0.94596 0.92690 0.90072 0.92477 0.93082 0.93070 0.92180 0.93536 0.92648 0.89112 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.02 16 2 C -0.12 -1.11 5.82 -26.73 -0.16 -1.26 16 3 C -0.11 -1.22 4.60 -26.73 -0.12 -1.34 16 4 C -0.10 -1.03 3.12 -88.99 -0.28 -1.31 16 5 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.15 -1.74 6.28 -26.74 -0.17 -1.91 16 7 C 0.51 8.29 7.31 -10.86 -0.08 8.21 16 8 O -0.55 -10.63 15.95 5.56 0.09 -10.54 16 9 N -0.60 -9.69 3.14 -175.90 -0.55 -10.25 16 10 C 0.29 5.51 5.44 -63.32 -0.34 5.17 16 11 N -0.53 -10.91 4.45 -231.98 -1.03 -11.94 16 12 C 0.16 3.82 2.32 -4.98 -0.01 3.81 16 13 C -0.51 -13.70 9.08 -34.44 -0.31 -14.01 16 14 H 0.08 2.30 8.06 -52.48 -0.42 1.87 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -26.72 13.96 55.43 0.77 -25.95 16 17 Si 0.87 21.08 27.56 -169.99 -4.69 16.40 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.24 6.41 56.52 0.36 -5.88 16 21 C 0.07 1.31 2.86 -67.72 -0.19 1.12 16 22 C -0.18 -3.17 8.50 37.15 0.32 -2.86 16 23 C -0.14 -2.39 9.11 37.16 0.34 -2.05 16 24 C 0.11 1.43 6.90 -3.12 -0.02 1.41 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.52 6.91 -51.93 -0.36 0.16 16 30 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 31 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 32 H 0.10 1.06 6.69 -51.93 -0.35 0.71 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.10 2.03 7.26 -51.92 -0.38 1.66 16 35 H 0.05 1.00 6.07 -51.93 -0.32 0.69 16 36 H -0.01 -0.32 7.00 -51.93 -0.36 -0.68 16 37 H 0.04 0.87 4.75 -51.93 -0.25 0.62 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 39 H 0.08 1.59 5.42 -51.93 -0.28 1.31 16 40 H 0.06 1.05 6.67 -51.93 -0.35 0.70 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.92 6.60 -51.93 -0.34 0.58 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 1.02 6.59 -51.93 -0.34 0.67 16 46 H 0.09 1.39 7.88 -51.93 -0.41 0.98 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -30.54 358.24 -9.17 -39.71 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.40 Total: 1.34 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.76 Total: -4.17 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -0.81 Total: -48.13 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.69 Total: 16.40 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.54 -9.17 -39.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743359698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.058 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds