Wall clock time and date at job start Tue Mar 31 2020 06:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47022 * 2 1 4 4 C 1.53001 * 109.46791 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.86070 * 51.21181 * 4 3 2 6 6 C 1.54627 * 111.00410 * 287.39403 * 4 3 2 7 7 C 1.51287 * 104.25676 * 266.45255 * 6 4 3 8 8 O 1.21281 * 124.94308 * 164.00875 * 7 6 4 9 9 N 1.34415 * 110.11572 * 344.14314 * 7 6 4 10 10 C 1.46494 * 124.35094 * 179.44190 * 9 7 6 11 11 N 1.46902 * 109.47053 * 269.69475 * 10 9 7 12 12 C 1.46894 * 111.00283 * 204.99871 * 11 10 9 13 13 C 1.50702 * 109.47265 * 75.88344 * 12 11 10 14 14 H 1.08004 * 119.99735 * 355.37310 * 13 12 11 15 15 C 1.37870 * 120.00530 * 175.37661 * 13 12 11 16 16 N 1.31511 * 120.00159 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99984 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.46864 * 90.00433 * 17 15 13 19 19 H 1.48498 * 109.47398 * 210.00299 * 17 15 13 20 20 H 1.48504 * 109.47167 * 330.00756 * 17 15 13 21 21 C 1.46904 * 110.99726 * 81.04894 * 11 10 9 22 22 C 1.52993 * 109.47171 * 73.02633 * 21 11 10 23 23 C 1.52998 * 109.47197 * 193.02861 * 21 11 10 24 24 C 1.46768 * 111.29811 * 359.17045 * 9 7 6 25 25 H 1.08999 * 109.46537 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47020 * 299.99944 * 1 2 3 27 27 H 1.08994 * 109.46605 * 59.99911 * 1 2 3 28 28 H 1.08992 * 109.46872 * 239.99475 * 2 1 3 29 29 H 1.09002 * 109.46559 * 119.99768 * 2 1 3 30 30 H 1.09001 * 109.47177 * 60.00152 * 3 2 1 31 31 H 1.09000 * 109.46838 * 299.99640 * 3 2 1 32 32 H 1.09004 * 110.48228 * 25.34080 * 6 4 3 33 33 H 1.08992 * 110.49069 * 147.85857 * 6 4 3 34 34 H 1.09009 * 109.47478 * 149.70093 * 10 9 7 35 35 H 1.09002 * 109.47423 * 29.69708 * 10 9 7 36 36 H 1.08996 * 109.47405 * 315.88704 * 12 11 10 37 37 H 1.08995 * 109.47425 * 195.88109 * 12 11 10 38 38 H 0.97003 * 120.00271 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.47014 * 313.02655 * 21 11 10 40 40 H 1.08996 * 109.47134 * 60.00096 * 22 21 11 41 41 H 1.09004 * 109.47403 * 180.02562 * 22 21 11 42 42 H 1.09002 * 109.47483 * 299.99810 * 22 21 11 43 43 H 1.09000 * 109.47103 * 54.39654 * 23 21 11 44 44 H 1.08999 * 109.47211 * 174.40343 * 23 21 11 45 45 H 1.09006 * 109.47142 * 294.40341 * 23 21 11 46 46 H 1.09000 * 110.24506 * 136.28435 * 24 9 7 47 47 H 1.08997 * 110.24755 * 258.28248 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9585 0.8042 -0.7930 6 6 4.1237 1.0111 1.3785 7 6 4.3417 2.3135 2.1167 8 8 4.5046 2.4143 3.3143 9 7 4.3256 3.3430 1.2526 10 6 4.4950 4.7467 1.6360 11 7 3.1813 5.3373 1.9249 12 6 3.2047 6.7933 1.7317 13 6 3.1810 7.1049 0.2575 14 1 3.2271 6.3032 -0.4647 15 6 3.1007 8.4134 -0.1694 16 7 3.0796 8.6853 -1.4559 17 14 3.0204 9.8001 1.0797 18 1 4.3968 10.2521 1.4065 19 1 2.2489 10.9344 0.5111 20 1 2.3521 9.3161 2.3143 21 6 2.7365 4.9934 3.2821 22 6 3.5533 5.7877 4.3031 23 6 1.2538 5.3384 3.4356 24 6 4.1230 2.8794 -0.1251 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 3.3986 0.3888 1.9031 33 1 5.0675 0.4788 1.2608 34 1 4.9667 5.2923 0.8187 35 1 5.1239 4.8074 2.5242 36 1 4.1115 7.2042 2.1754 37 1 2.3323 7.2375 2.2109 38 1 3.0235 9.6059 -1.7563 39 1 2.8807 3.9265 3.4523 40 1 3.4091 6.8546 4.1329 41 1 3.2236 5.5322 5.3102 42 1 4.6096 5.5419 4.1938 43 1 0.6834 4.8501 2.6455 44 1 0.8990 4.9930 4.4066 45 1 1.1227 6.4182 3.3640 46 1 3.4018 3.5177 -0.6356 47 1 5.0703 2.8733 -0.6642 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743359698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:45 Heat of formation + Delta-G solvation = -61.485939 kcal Electronic energy + Delta-G solvation = -24022.970655 eV Core-core repulsion = 20818.470310 eV Total energy + Delta-G solvation = -3204.500345 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.57468 -39.19075 -37.87982 -35.67562 -34.83287 -33.23256 -31.98907 -29.47708 -28.86111 -28.11159 -27.07636 -25.52393 -23.92857 -22.62282 -21.38611 -20.68560 -20.00484 -19.08704 -17.73990 -17.42733 -16.71241 -16.55556 -16.10717 -15.97886 -15.41297 -14.96192 -14.88809 -14.81848 -14.52885 -14.20854 -14.10027 -13.93903 -13.76237 -13.66047 -13.18172 -13.02402 -12.82272 -12.77170 -12.57298 -12.36949 -12.31835 -12.24353 -12.14340 -11.80605 -11.67667 -11.57258 -11.49054 -11.35223 -11.27917 -10.76932 -10.71129 -9.76394 -9.05029 -8.26521 -6.28005 1.33755 1.35953 1.45085 1.60654 2.14770 2.34428 3.05726 3.24858 3.47438 3.52920 3.83816 3.95330 4.04947 4.15169 4.23513 4.30589 4.39157 4.44130 4.46876 4.54153 4.66663 4.69839 4.72464 4.74089 4.79225 4.82654 4.86660 4.89854 4.95934 4.99108 5.06693 5.07640 5.14615 5.21935 5.27411 5.31401 5.38129 5.46606 5.51157 5.57723 5.62960 6.03394 6.23192 6.38256 6.65310 6.76919 7.23211 7.35290 8.89541 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016174 B = 0.005369 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.750754 B = 5213.397014 C = 5727.573251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.109 4.109 4 C -0.083 4.083 5 H 0.130 0.870 6 C -0.138 4.138 7 C 0.504 3.496 8 O -0.583 6.583 9 N -0.601 5.601 10 C 0.296 3.704 11 N -0.541 5.541 12 C 0.178 3.822 13 C -0.506 4.506 14 H 0.043 0.957 15 C 0.016 3.984 16 N -0.944 5.944 17 Si 0.934 3.066 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.252 1.252 21 C 0.070 3.930 22 C -0.172 4.172 23 C -0.132 4.132 24 C 0.102 3.898 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.126 0.874 34 H 0.082 0.918 35 H 0.047 0.953 36 H -0.013 1.013 37 H 0.035 0.965 38 H 0.265 0.735 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.050 0.950 44 H 0.073 0.927 45 H 0.046 0.954 46 H 0.063 0.937 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.447 -16.755 4.340 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.147 4.147 4 C -0.101 4.101 5 H 0.148 0.852 6 C -0.178 4.178 7 C 0.293 3.707 8 O -0.464 6.464 9 N -0.334 5.334 10 C 0.084 3.916 11 N -0.267 5.267 12 C 0.051 3.949 13 C -0.545 4.545 14 H 0.061 0.939 15 C -0.182 4.182 16 N -0.585 5.585 17 Si 0.758 3.242 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.176 1.176 21 C -0.038 4.038 22 C -0.231 4.231 23 C -0.189 4.189 24 C -0.021 4.021 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.128 0.872 33 H 0.144 0.856 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.005 0.995 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.704 -16.668 4.500 17.279 hybrid contribution 0.482 1.722 0.671 1.910 sum -0.222 -14.946 5.172 15.817 Atomic orbital electron populations 1.21790 0.96290 1.01901 1.01306 1.21513 0.95566 0.95358 1.02976 1.21589 0.93823 0.97872 1.01431 1.22228 0.95861 0.94403 0.97621 0.85158 1.22459 1.05051 0.94140 0.96141 1.21719 0.74449 0.88288 0.86196 1.90642 1.52747 1.87358 1.15641 1.48489 1.69886 1.05682 1.09321 1.21570 0.90162 0.80704 0.99117 1.61876 1.27365 1.12333 1.25114 1.19884 0.95213 0.84364 0.95427 1.21208 1.49183 0.92544 0.91529 0.93901 1.25670 0.94633 1.01155 0.96743 1.70021 1.52629 1.20227 1.15620 0.85914 0.78984 0.79092 0.80187 1.19419 1.20861 1.17554 1.21809 0.95631 0.99481 0.86893 1.22334 0.99958 1.00329 1.00465 1.21746 0.94591 1.01069 1.01529 1.22339 1.01562 0.96075 0.82088 0.91647 0.93930 0.93083 0.90220 0.91354 0.94367 0.91938 0.87231 0.85599 0.89990 0.93478 0.99511 0.94718 0.92552 0.90711 0.93079 0.90926 0.93783 0.93046 0.90787 0.93527 0.91888 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.91 71.99 0.71 -1.87 16 2 C -0.12 -1.80 5.82 30.60 0.18 -1.63 16 3 C -0.11 -2.27 4.60 30.59 0.14 -2.13 16 4 C -0.08 -1.54 3.12 -9.73 -0.03 -1.57 16 5 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 6 C -0.14 -2.78 6.28 30.59 0.19 -2.59 16 7 C 0.50 15.85 7.31 87.90 0.64 16.50 16 8 O -0.58 -22.50 15.95 -3.03 -0.05 -22.55 16 9 N -0.60 -19.73 3.14 -829.02 -2.61 -22.33 16 10 C 0.30 11.59 5.44 170.81 0.93 12.52 16 11 N -0.54 -22.65 4.45 -887.84 -3.95 -26.60 16 12 C 0.18 8.40 2.32 85.56 0.20 8.60 16 13 C -0.51 -28.22 9.08 25.60 0.23 -27.99 16 14 H 0.04 2.64 8.06 -2.91 -0.02 2.61 16 15 C 0.02 0.89 5.47 84.65 0.46 1.35 16 16 N -0.94 -57.50 13.96 21.44 0.30 -57.20 16 17 Si 0.93 43.44 27.56 68.60 1.89 45.34 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.25 -11.02 6.41 99.48 0.64 -10.38 16 21 C 0.07 2.61 2.86 44.91 0.13 2.74 16 22 C -0.17 -5.93 8.50 71.98 0.61 -5.32 16 23 C -0.13 -4.48 9.11 71.98 0.66 -3.82 16 24 C 0.10 2.70 6.90 86.83 0.60 3.30 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.04 0.79 8.14 -2.39 -0.02 0.78 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.97 6.91 -2.39 -0.02 0.95 16 30 H 0.04 1.02 8.12 -2.39 -0.02 1.00 16 31 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 32 H 0.11 2.02 6.69 -2.38 -0.02 2.01 16 33 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 3.47 7.26 -2.38 -0.02 3.45 16 35 H 0.05 1.87 6.07 -2.39 -0.01 1.86 16 36 H -0.01 -0.60 7.00 -2.39 -0.02 -0.62 16 37 H 0.03 1.66 4.75 -2.39 -0.01 1.65 16 38 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.07 2.92 5.42 -2.39 -0.01 2.90 16 40 H 0.05 1.81 6.67 -2.39 -0.02 1.79 16 41 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.04 1.56 6.60 -2.39 -0.02 1.54 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.05 1.65 6.59 -2.38 -0.02 1.64 16 46 H 0.06 2.03 7.88 -2.39 -0.02 2.01 16 47 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -68.00 358.24 2.09 -65.90 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.85 Total: 19.36 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 5.65 Total: -1.91 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -6.26 Total: -106.14 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.05 Total: -22.55 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.89 Total: 45.34 kcal Total: -68.00 2.09 -65.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743359698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.418 kcal (2) G-P(sol) polarization free energy of solvation -67.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds