Wall clock time and date at job start Tue Mar 31 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46725 * 2 1 4 4 C 1.53007 * 109.46987 * 180.02562 * 3 2 1 5 5 H 1.08993 * 110.88263 * 308.80646 * 4 3 2 6 6 C 1.54625 * 110.97215 * 72.62054 * 4 3 2 7 7 C 1.51279 * 104.19515 * 93.32041 * 6 4 3 8 8 O 1.21286 * 124.93854 * 196.23190 * 7 6 4 9 9 N 1.34414 * 110.11727 * 16.25170 * 7 6 4 10 10 C 1.46501 * 124.34801 * 180.42388 * 9 7 6 11 11 N 1.46900 * 109.47506 * 262.17394 * 10 9 7 12 12 C 1.46894 * 111.00200 * 207.71825 * 11 10 9 13 13 C 1.50700 * 109.47157 * 163.30412 * 12 11 10 14 14 H 1.07996 * 119.99999 * 357.60178 * 13 12 11 15 15 C 1.37885 * 119.99920 * 177.59285 * 13 12 11 16 16 N 1.31509 * 120.00070 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99877 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47445 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47236 * 120.00172 * 17 15 13 20 20 H 1.48504 * 109.47146 * 240.00275 * 17 15 13 21 21 C 1.46898 * 110.99696 * 83.76217 * 11 10 9 22 22 C 1.52998 * 109.46949 * 70.95827 * 21 11 10 23 23 C 1.53007 * 109.46924 * 190.95743 * 21 11 10 24 24 C 1.46762 * 111.30110 * 0.40756 * 9 7 6 25 25 H 1.09003 * 109.46797 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47455 * 299.99552 * 1 2 3 27 27 H 1.09003 * 109.47412 * 60.00106 * 1 2 3 28 28 H 1.08994 * 109.47439 * 240.00219 * 2 1 3 29 29 H 1.08996 * 109.47161 * 119.99669 * 2 1 3 30 30 H 1.08997 * 109.47448 * 60.00144 * 3 2 1 31 31 H 1.09003 * 109.47088 * 300.00092 * 3 2 1 32 32 H 1.08999 * 110.48162 * 334.64383 * 6 4 3 33 33 H 1.08999 * 110.48689 * 212.00162 * 6 4 3 34 34 H 1.08995 * 109.47272 * 22.17551 * 10 9 7 35 35 H 1.09003 * 109.47074 * 142.17283 * 10 9 7 36 36 H 1.08997 * 109.47202 * 283.30957 * 12 11 10 37 37 H 1.09003 * 109.47052 * 43.30785 * 12 11 10 38 38 H 0.96995 * 120.00154 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.47327 * 310.95810 * 21 11 10 40 40 H 1.09003 * 109.47071 * 68.27535 * 22 21 11 41 41 H 1.09003 * 109.47154 * 188.26788 * 22 21 11 42 42 H 1.09000 * 109.47525 * 308.26801 * 22 21 11 43 43 H 1.08999 * 109.47066 * 51.75097 * 23 21 11 44 44 H 1.09000 * 109.46864 * 171.75999 * 23 21 11 45 45 H 1.08999 * 109.46809 * 291.75864 * 23 21 11 46 46 H 1.09006 * 110.24711 * 101.98107 * 24 9 7 47 47 H 1.09000 * 110.24478 * 223.98256 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9588 0.8043 0.7926 6 6 4.1228 1.0116 -1.3789 7 6 4.3345 2.3146 -2.1177 8 8 4.4909 2.4161 -3.3161 9 7 4.3246 3.3434 -1.2527 10 6 4.4931 4.7473 -1.6360 11 7 5.8906 5.1481 -1.4252 12 6 5.9899 6.5881 -1.1527 13 6 7.3359 6.8932 -0.5476 14 1 8.0316 6.0920 -0.3463 15 6 7.6794 8.1953 -0.2512 16 7 6.8322 9.1708 -0.4961 17 14 9.3481 8.5735 0.4981 18 1 10.1100 7.3109 0.6729 19 1 10.1002 9.4842 -0.4022 20 1 9.1612 9.2263 1.8188 21 6 6.7253 4.7708 -2.5736 22 6 6.3804 5.6612 -3.7691 23 6 8.2012 4.9510 -2.2124 24 6 4.1227 2.8796 0.1250 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6765 1.9564 -0.8900 32 1 3.3975 0.3893 -1.9031 33 1 5.0679 0.4814 -1.2619 34 1 4.2346 4.8703 -2.6876 35 1 3.8402 5.3714 -1.0259 36 1 5.8760 7.1429 -2.0840 37 1 5.2039 6.8812 -0.4567 38 1 7.0737 10.0868 -0.2873 39 1 6.5390 3.7283 -2.8314 40 1 6.7029 6.6825 -3.5664 41 1 6.8897 5.2891 -4.6581 42 1 5.3032 5.6462 -3.9346 43 1 8.4120 4.4333 -1.2767 44 1 8.8227 4.5356 -3.0057 45 1 8.4201 6.0126 -2.0975 46 1 5.0704 2.8734 0.6637 47 1 3.4017 3.5178 0.6360 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743359699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:51 Heat of formation + Delta-G solvation = -36.992714 kcal Electronic energy + Delta-G solvation = -23607.417725 eV Core-core repulsion = 20403.979486 eV Total energy + Delta-G solvation = -3203.438240 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.35633 -37.60073 -36.75478 -34.72396 -32.65591 -32.00677 -30.11296 -28.06799 -27.55798 -26.30573 -25.93088 -23.92485 -22.21532 -21.93897 -20.51880 -19.30956 -18.53157 -16.71847 -16.40325 -15.94717 -15.49380 -15.35642 -14.64088 -14.52907 -14.08811 -13.82090 -13.59490 -13.25738 -13.22466 -12.99174 -12.82972 -12.34266 -12.20025 -11.99290 -11.72425 -11.60872 -11.49930 -11.26729 -11.16660 -10.91950 -10.81407 -10.76389 -10.69650 -10.65299 -10.64522 -10.27366 -10.15098 -9.56882 -9.40661 -8.98853 -8.45512 -8.36661 -7.25926 -6.02777 -3.99770 2.88350 3.29719 3.37133 3.38383 3.42982 4.34173 4.42503 4.45514 4.59293 4.82851 4.92082 5.00040 5.09797 5.20443 5.31518 5.40266 5.49649 5.58864 5.60801 5.66160 5.72442 5.79207 5.81001 5.85132 5.89620 5.92014 5.99648 6.02748 6.11986 6.16133 6.19142 6.45022 6.62063 6.62715 6.78438 6.84527 7.03054 7.17470 7.42507 7.49313 7.50780 7.84199 8.10322 8.20443 8.46736 8.58652 9.05159 9.60361 11.07717 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023879 B = 0.004072 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.276674 B = 6875.121374 C = 7369.091021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.102 4.102 5 H 0.094 0.906 6 C -0.151 4.151 7 C 0.515 3.485 8 O -0.542 6.542 9 N -0.598 5.598 10 C 0.281 3.719 11 N -0.545 5.545 12 C 0.190 3.810 13 C -0.500 4.500 14 H 0.076 0.924 15 C 0.052 3.948 16 N -0.899 5.899 17 Si 0.892 3.108 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.285 1.285 21 C 0.094 3.906 22 C -0.177 4.177 23 C -0.144 4.144 24 C 0.111 3.889 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.009 0.991 37 H 0.023 0.977 38 H 0.259 0.741 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.050 0.950 44 H 0.027 0.973 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.072 -15.827 1.849 18.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.120 4.120 5 H 0.113 0.887 6 C -0.192 4.192 7 C 0.302 3.698 8 O -0.420 6.420 9 N -0.332 5.332 10 C 0.070 3.930 11 N -0.271 5.271 12 C 0.065 3.935 13 C -0.539 4.539 14 H 0.093 0.907 15 C -0.148 4.148 16 N -0.539 5.539 17 Si 0.720 3.280 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.014 4.014 22 C -0.236 4.236 23 C -0.201 4.201 24 C -0.012 4.012 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.026 0.974 37 H 0.041 0.959 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.114 0.886 46 H 0.094 0.906 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.827 -15.719 1.638 18.102 hybrid contribution 0.599 0.816 -0.160 1.025 sum -8.228 -14.903 1.478 17.088 Atomic orbital electron populations 1.21776 0.95972 1.01451 1.01873 1.21550 0.95768 0.96816 1.02087 1.21649 0.93668 0.97000 1.02639 1.22231 0.95950 0.96575 0.97286 0.88745 1.22441 1.03464 0.96854 0.96400 1.20819 0.75687 0.86671 0.86649 1.90700 1.50952 1.86341 1.14030 1.48461 1.69938 1.07144 1.07685 1.21858 0.92336 0.79756 0.99051 1.62069 1.05798 1.21335 1.37892 1.19824 0.97999 0.79739 0.95951 1.21457 1.00682 0.92475 1.39286 0.90650 1.24984 0.97231 0.96405 0.96211 1.69961 1.35361 0.99799 1.48828 0.86528 0.84230 0.78372 0.78857 1.19614 1.21203 1.21149 1.21405 0.94504 0.97153 0.88361 1.22384 1.00268 1.02210 0.98702 1.22240 0.93745 1.05161 0.98949 1.22086 1.01243 0.93878 0.84038 0.92913 0.92749 0.92766 0.91905 0.91901 0.91258 0.91751 0.88542 0.88191 0.92226 0.90045 0.97370 0.95863 0.93087 0.92227 0.91065 0.93595 0.93829 0.93054 0.95430 0.88596 0.90563 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.90 5.82 -26.73 -0.16 -1.06 16 3 C -0.11 -0.94 4.60 -26.73 -0.12 -1.07 16 4 C -0.10 -0.94 3.12 -88.99 -0.28 -1.22 16 5 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 6 C -0.15 -1.69 6.28 -26.74 -0.17 -1.86 16 7 C 0.51 8.29 7.44 -10.86 -0.08 8.21 16 8 O -0.54 -10.86 16.66 5.55 0.09 -10.77 16 9 N -0.60 -9.43 3.17 -175.91 -0.56 -9.98 16 10 C 0.28 5.18 5.68 -63.31 -0.36 4.82 16 11 N -0.54 -11.51 4.59 -231.97 -1.06 -12.58 16 12 C 0.19 4.68 4.45 -4.98 -0.02 4.66 16 13 C -0.50 -13.26 6.69 -34.44 -0.23 -13.49 16 14 H 0.08 1.99 5.38 -52.49 -0.28 1.71 16 15 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 16 N -0.90 -25.89 13.29 55.43 0.74 -25.16 16 17 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.09 1.95 2.89 -67.71 -0.20 1.76 16 22 C -0.18 -3.55 8.29 37.16 0.31 -3.24 16 23 C -0.14 -2.97 7.70 37.16 0.29 -2.69 16 24 C 0.11 1.36 6.90 -3.12 -0.02 1.33 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.46 6.90 -51.93 -0.36 0.10 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 31 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 32 H 0.10 0.97 6.69 -51.93 -0.35 0.62 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.16 5.71 -51.93 -0.30 0.87 16 35 H 0.08 1.44 7.49 -51.93 -0.39 1.05 16 36 H 0.01 0.22 5.68 -51.93 -0.30 -0.07 16 37 H 0.02 0.61 7.60 -51.93 -0.39 0.22 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.06 1.26 6.58 -51.93 -0.34 0.92 16 40 H 0.07 1.56 6.50 -51.93 -0.34 1.22 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.86 6.32 -51.93 -0.33 0.53 16 43 H 0.05 1.07 7.51 -51.93 -0.39 0.68 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.10 2.21 5.43 -51.93 -0.28 1.93 16 46 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.08 0.86 7.88 -51.93 -0.41 0.45 16 LS Contribution 357.26 15.07 5.38 5.38 Total: -1.00 -30.27 357.26 -9.43 -39.70 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -8.23 Total: 0.47 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -0.77 Total: -3.20 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.88 Total: -47.72 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.27 -9.43 -39.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743359699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.710 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds