Wall clock time and date at job start Tue Mar 31 2020 06:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46725 * 2 1 4 4 C 1.53007 * 109.46987 * 180.02562 * 3 2 1 5 5 H 1.08993 * 110.88263 * 308.80646 * 4 3 2 6 6 C 1.54625 * 110.97215 * 72.62054 * 4 3 2 7 7 C 1.51279 * 104.19515 * 93.32041 * 6 4 3 8 8 O 1.21286 * 124.93854 * 196.23190 * 7 6 4 9 9 N 1.34414 * 110.11727 * 16.25170 * 7 6 4 10 10 C 1.46501 * 124.34801 * 180.42388 * 9 7 6 11 11 N 1.46900 * 109.47506 * 262.17394 * 10 9 7 12 12 C 1.46894 * 111.00200 * 207.71825 * 11 10 9 13 13 C 1.50700 * 109.47157 * 163.30412 * 12 11 10 14 14 H 1.07996 * 119.99999 * 357.60178 * 13 12 11 15 15 C 1.37885 * 119.99920 * 177.59285 * 13 12 11 16 16 N 1.31509 * 120.00070 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99877 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47445 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47236 * 120.00172 * 17 15 13 20 20 H 1.48504 * 109.47146 * 240.00275 * 17 15 13 21 21 C 1.46898 * 110.99696 * 83.76217 * 11 10 9 22 22 C 1.52998 * 109.46949 * 70.95827 * 21 11 10 23 23 C 1.53007 * 109.46924 * 190.95743 * 21 11 10 24 24 C 1.46762 * 111.30110 * 0.40756 * 9 7 6 25 25 H 1.09003 * 109.46797 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47455 * 299.99552 * 1 2 3 27 27 H 1.09003 * 109.47412 * 60.00106 * 1 2 3 28 28 H 1.08994 * 109.47439 * 240.00219 * 2 1 3 29 29 H 1.08996 * 109.47161 * 119.99669 * 2 1 3 30 30 H 1.08997 * 109.47448 * 60.00144 * 3 2 1 31 31 H 1.09003 * 109.47088 * 300.00092 * 3 2 1 32 32 H 1.08999 * 110.48162 * 334.64383 * 6 4 3 33 33 H 1.08999 * 110.48689 * 212.00162 * 6 4 3 34 34 H 1.08995 * 109.47272 * 22.17551 * 10 9 7 35 35 H 1.09003 * 109.47074 * 142.17283 * 10 9 7 36 36 H 1.08997 * 109.47202 * 283.30957 * 12 11 10 37 37 H 1.09003 * 109.47052 * 43.30785 * 12 11 10 38 38 H 0.96995 * 120.00154 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.47327 * 310.95810 * 21 11 10 40 40 H 1.09003 * 109.47071 * 68.27535 * 22 21 11 41 41 H 1.09003 * 109.47154 * 188.26788 * 22 21 11 42 42 H 1.09000 * 109.47525 * 308.26801 * 22 21 11 43 43 H 1.08999 * 109.47066 * 51.75097 * 23 21 11 44 44 H 1.09000 * 109.46864 * 171.75999 * 23 21 11 45 45 H 1.08999 * 109.46809 * 291.75864 * 23 21 11 46 46 H 1.09006 * 110.24711 * 101.98107 * 24 9 7 47 47 H 1.09000 * 110.24478 * 223.98256 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9588 0.8043 0.7926 6 6 4.1228 1.0116 -1.3789 7 6 4.3345 2.3146 -2.1177 8 8 4.4909 2.4161 -3.3161 9 7 4.3246 3.3434 -1.2527 10 6 4.4931 4.7473 -1.6360 11 7 5.8906 5.1481 -1.4252 12 6 5.9899 6.5881 -1.1527 13 6 7.3359 6.8932 -0.5476 14 1 8.0316 6.0920 -0.3463 15 6 7.6794 8.1953 -0.2512 16 7 6.8322 9.1708 -0.4961 17 14 9.3481 8.5735 0.4981 18 1 10.1100 7.3109 0.6729 19 1 10.1002 9.4842 -0.4022 20 1 9.1612 9.2263 1.8188 21 6 6.7253 4.7708 -2.5736 22 6 6.3804 5.6612 -3.7691 23 6 8.2012 4.9510 -2.2124 24 6 4.1227 2.8796 0.1250 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6765 1.9564 -0.8900 32 1 3.3975 0.3893 -1.9031 33 1 5.0679 0.4814 -1.2619 34 1 4.2346 4.8703 -2.6876 35 1 3.8402 5.3714 -1.0259 36 1 5.8760 7.1429 -2.0840 37 1 5.2039 6.8812 -0.4567 38 1 7.0737 10.0868 -0.2873 39 1 6.5390 3.7283 -2.8314 40 1 6.7029 6.6825 -3.5664 41 1 6.8897 5.2891 -4.6581 42 1 5.3032 5.6462 -3.9346 43 1 8.4120 4.4333 -1.2767 44 1 8.8227 4.5356 -3.0057 45 1 8.4201 6.0126 -2.0975 46 1 5.0704 2.8734 0.6637 47 1 3.4017 3.5178 0.6360 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743359699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:50 Heat of formation + Delta-G solvation = -54.887576 kcal Electronic energy + Delta-G solvation = -23608.193705 eV Core-core repulsion = 20403.979486 eV Total energy + Delta-G solvation = -3204.214219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55099 -39.25657 -37.89293 -35.71979 -34.64578 -33.20999 -31.62797 -29.48506 -28.89774 -27.89105 -27.08314 -25.40418 -24.12344 -22.63158 -21.37314 -20.71603 -20.08635 -18.57020 -17.61160 -17.38439 -16.93592 -16.55776 -16.28329 -15.72305 -15.55937 -14.99831 -14.82504 -14.69540 -14.20816 -14.18733 -14.03178 -13.85494 -13.67127 -13.23428 -13.11043 -12.93969 -12.81408 -12.63061 -12.59044 -12.44498 -12.32296 -12.27512 -12.05797 -11.94335 -11.64341 -11.49932 -11.39162 -11.27447 -10.96140 -10.73873 -10.49269 -9.76755 -9.02833 -8.12347 -6.15424 1.42164 1.44577 1.55897 1.62353 2.11058 2.45287 3.19956 3.31858 3.48238 3.52004 3.84287 3.98806 4.10504 4.18634 4.29175 4.31226 4.35450 4.43900 4.49362 4.54957 4.70846 4.75608 4.79013 4.81114 4.83299 4.90175 4.96076 4.99337 5.05609 5.07698 5.14346 5.20558 5.23524 5.25785 5.37713 5.46881 5.50029 5.56658 5.57478 5.70764 5.77680 6.11354 6.23351 6.43347 6.62083 6.95477 7.23150 7.48723 8.98279 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023879 B = 0.004072 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.276674 B = 6875.121374 C = 7369.091021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.109 4.109 4 C -0.083 4.083 5 H 0.126 0.874 6 C -0.140 4.140 7 C 0.502 3.498 8 O -0.588 6.588 9 N -0.601 5.601 10 C 0.285 3.715 11 N -0.544 5.544 12 C 0.206 3.794 13 C -0.502 4.502 14 H 0.077 0.923 15 C 0.002 3.998 16 N -0.936 5.936 17 Si 0.956 3.044 18 H -0.262 1.262 19 H -0.285 1.285 20 H -0.283 1.283 21 C 0.096 3.904 22 C -0.167 4.167 23 C -0.135 4.135 24 C 0.104 3.896 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.046 0.954 35 H 0.084 0.916 36 H -0.014 1.014 37 H 0.003 0.997 38 H 0.260 0.740 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.047 0.953 44 H 0.051 0.949 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.663 -18.049 3.120 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.147 4.147 4 C -0.102 4.102 5 H 0.144 0.856 6 C -0.180 4.180 7 C 0.292 3.708 8 O -0.470 6.470 9 N -0.334 5.334 10 C 0.072 3.928 11 N -0.270 5.270 12 C 0.080 3.920 13 C -0.540 4.540 14 H 0.095 0.905 15 C -0.195 4.195 16 N -0.578 5.578 17 Si 0.782 3.218 18 H -0.186 1.186 19 H -0.211 1.211 20 H -0.209 1.209 21 C -0.012 4.012 22 C -0.226 4.226 23 C -0.193 4.193 24 C -0.018 4.018 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.004 0.996 37 H 0.021 0.979 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.430 -17.979 2.938 20.073 hybrid contribution 0.411 1.479 -0.587 1.643 sum -8.020 -16.500 2.351 18.496 Atomic orbital electron populations 1.21788 0.96003 1.01877 1.01573 1.21533 0.95746 0.95816 1.02803 1.21632 0.93005 0.97927 1.02124 1.22241 0.96322 0.94602 0.97026 0.85606 1.22464 1.04831 0.94059 0.96662 1.21750 0.74486 0.88347 0.86255 1.90665 1.52914 1.87246 1.16131 1.48514 1.69459 1.05935 1.09495 1.21692 0.90864 0.81733 0.98464 1.62048 1.07493 1.18990 1.38514 1.19483 0.96741 0.81620 0.94187 1.21706 1.01176 0.92569 1.38596 0.90510 1.25759 1.00643 0.96344 0.96800 1.70081 1.37299 1.00144 1.50232 0.85523 0.80076 0.78329 0.77880 1.18613 1.21110 1.20860 1.21397 0.94561 0.96987 0.88284 1.22260 1.00232 1.00741 0.99322 1.22098 0.93992 1.03457 0.99721 1.22335 1.01521 0.96041 0.81880 0.92148 0.92507 0.93672 0.91877 0.90434 0.90439 0.93712 0.87117 0.86565 0.93654 0.89750 0.99633 0.97885 0.93087 0.92259 0.93324 0.91752 0.94123 0.93385 0.93004 0.91092 0.91033 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.91 71.98 0.71 -1.12 16 2 C -0.12 -1.39 5.82 30.59 0.18 -1.21 16 3 C -0.11 -1.56 4.60 30.60 0.14 -1.42 16 4 C -0.08 -1.28 3.12 -9.73 -0.03 -1.31 16 5 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 6 C -0.14 -2.77 6.28 30.59 0.19 -2.57 16 7 C 0.50 15.80 7.44 87.90 0.65 16.45 16 8 O -0.59 -23.65 16.66 -3.05 -0.05 -23.70 16 9 N -0.60 -18.65 3.17 -829.04 -2.63 -21.28 16 10 C 0.28 10.69 5.68 170.81 0.97 11.66 16 11 N -0.54 -23.31 4.59 -887.83 -4.07 -27.38 16 12 C 0.21 10.44 4.45 85.56 0.38 10.82 16 13 C -0.50 -26.87 6.69 25.60 0.17 -26.70 16 14 H 0.08 4.03 5.38 -2.91 -0.02 4.02 16 15 C 0.00 0.10 5.46 84.66 0.46 0.56 16 16 N -0.94 -54.89 13.29 21.45 0.28 -54.60 16 17 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 18 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 C 0.10 3.98 2.89 44.92 0.13 4.11 16 22 C -0.17 -6.80 8.29 71.98 0.60 -6.20 16 23 C -0.14 -5.51 7.70 71.98 0.55 -4.95 16 24 C 0.10 2.37 6.90 86.83 0.60 2.97 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.73 6.90 -2.39 -0.02 0.72 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 1.01 8.10 -2.39 -0.02 0.99 16 31 H 0.04 0.83 8.12 -2.39 -0.02 0.81 16 32 H 0.11 1.92 6.69 -2.39 -0.02 1.91 16 33 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.05 1.84 5.71 -2.39 -0.01 1.82 16 35 H 0.08 3.07 7.49 -2.39 -0.02 3.06 16 36 H -0.01 -0.77 5.68 -2.39 -0.01 -0.78 16 37 H 0.00 0.17 7.60 -2.39 -0.02 0.15 16 38 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.06 2.49 6.58 -2.39 -0.02 2.48 16 40 H 0.05 2.19 6.50 -2.39 -0.02 2.17 16 41 H 0.06 2.33 8.14 -2.39 -0.02 2.32 16 42 H 0.04 1.65 6.32 -2.39 -0.02 1.63 16 43 H 0.05 1.95 7.51 -2.39 -0.02 1.93 16 44 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.07 3.26 5.43 -2.39 -0.01 3.25 16 46 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 47 H 0.08 1.77 7.88 -2.39 -0.02 1.75 16 Total: -1.00 -66.23 357.26 2.20 -64.02 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.93 Total: 16.39 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 5.71 Total: 1.08 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -6.41 Total: -103.26 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.05 Total: -23.70 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -66.23 2.20 -64.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743359699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.134 kcal (2) G-P(sol) polarization free energy of solvation -66.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds