Wall clock time and date at job start Tue Mar 31 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47390 * 2 1 4 4 C 1.52996 * 109.47245 * 185.15150 * 3 2 1 5 5 H 1.08998 * 109.46102 * 57.12036 * 4 3 2 6 6 C 1.53032 * 109.46369 * 297.13949 * 4 3 2 7 7 H 1.08997 * 109.53980 * 60.85517 * 6 4 3 8 8 C 1.53007 * 109.50390 * 300.75138 * 6 4 3 9 9 C 1.53126 * 109.27988 * 180.81802 * 6 4 3 10 10 C 1.53118 * 109.15992 * 57.65246 * 9 6 4 11 11 C 1.53040 * 109.27953 * 302.34610 * 10 9 6 12 12 N 1.46841 * 109.52222 * 59.18037 * 11 10 9 13 13 C 1.46898 * 111.00231 * 174.15951 * 12 11 10 14 14 C 1.50696 * 109.46937 * 63.95500 * 13 12 11 15 15 O 1.21282 * 120.00306 * 0.02562 * 14 13 12 16 16 N 1.34780 * 120.00227 * 180.02562 * 14 13 12 17 17 C 1.46504 * 120.00303 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47206 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99554 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99814 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00579 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99861 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46719 * 90.00009 * 22 20 18 24 24 H 1.48494 * 109.47032 * 210.00097 * 22 20 18 25 25 H 1.48505 * 109.46813 * 330.00338 * 22 20 18 26 26 H 1.09000 * 109.47117 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46664 * 299.99610 * 1 2 3 28 28 H 1.09000 * 109.47035 * 59.99772 * 1 2 3 29 29 H 1.09000 * 109.46874 * 239.99656 * 2 1 3 30 30 H 1.09000 * 109.47035 * 120.00228 * 2 1 3 31 31 H 1.09004 * 109.47101 * 65.14849 * 3 2 1 32 32 H 1.09005 * 109.47493 * 305.15293 * 3 2 1 33 33 H 1.08996 * 109.47368 * 300.19915 * 8 6 4 34 34 H 1.09005 * 109.46538 * 60.19836 * 8 6 4 35 35 H 1.09003 * 109.47032 * 180.19340 * 8 6 4 36 36 H 1.09005 * 109.51978 * 297.74696 * 9 6 4 37 37 H 1.08994 * 109.52259 * 177.56237 * 9 6 4 38 38 H 1.09004 * 109.50066 * 182.40655 * 10 9 6 39 39 H 1.09000 * 109.50430 * 62.29088 * 10 9 6 40 40 H 1.08996 * 109.46281 * 179.20157 * 11 10 9 41 41 H 1.09000 * 109.46136 * 299.16692 * 11 10 9 42 42 H 1.08997 * 109.47481 * 183.95472 * 13 12 11 43 43 H 1.09002 * 109.47243 * 303.95693 * 13 12 11 44 44 H 0.97000 * 119.99955 * 0.02562 * 16 14 13 45 45 H 1.08997 * 109.46917 * 300.00083 * 17 16 14 46 46 H 1.09002 * 109.47016 * 59.99819 * 17 16 14 47 47 H 0.96999 * 120.00463 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5645 1.4443 -0.1295 5 1 3.8526 0.9129 -1.0366 6 6 4.1805 0.7486 1.0864 7 1 3.8340 -0.2839 1.1300 8 6 3.7609 1.4825 2.3618 9 6 5.7065 0.7709 0.9625 10 6 6.1798 2.2222 0.8426 11 6 5.5059 2.8752 -0.3664 12 7 4.0477 2.8293 -0.1996 13 6 3.3714 3.5691 -1.2734 14 6 3.6464 2.8995 -2.5951 15 8 4.3374 1.9037 -2.6382 16 7 3.1246 3.4071 -3.7293 17 6 3.3915 2.7558 -5.0142 18 6 2.6978 3.5148 -6.1159 19 1 2.1165 4.3947 -5.8823 20 6 2.8051 3.0860 -7.4218 21 7 3.5124 2.0144 -7.7061 22 14 1.9458 4.0273 -8.7875 23 1 2.8573 5.0732 -9.3172 24 1 1.5795 3.0904 -9.8798 25 1 0.7175 4.6667 -8.2510 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7540 1.9289 0.9325 32 1 1.6034 1.9823 -0.8403 33 1 4.1065 2.5153 2.3171 34 1 2.6745 1.4663 2.4495 35 1 4.2027 0.9886 3.2272 36 1 6.0080 0.2149 0.0748 37 1 6.1505 0.3149 1.8473 38 1 7.2617 2.2424 0.7111 39 1 5.9123 2.7682 1.7473 40 1 5.8299 3.9128 -0.4463 41 1 5.7849 2.3370 -1.2723 42 1 2.2974 3.5787 -1.0875 43 1 3.7446 4.5929 -1.3002 44 1 2.5722 4.2038 -3.6949 45 1 4.4655 2.7455 -5.2000 46 1 3.0175 1.7323 -4.9873 47 1 3.5883 1.7130 -8.6250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744414357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:59 Heat of formation + Delta-G solvation = -57.394648 kcal Electronic energy + Delta-G solvation = -23813.469952 eV Core-core repulsion = 20609.147018 eV Total energy + Delta-G solvation = -3204.322934 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.34383 -38.12474 -34.89570 -34.37726 -33.67665 -32.36007 -31.26471 -28.46515 -27.39846 -26.35375 -25.64007 -22.99952 -22.62506 -21.65488 -20.53802 -19.70759 -18.51615 -16.94459 -16.04981 -15.74279 -15.57575 -15.26891 -14.98641 -14.40047 -14.33194 -14.16116 -13.77939 -13.28465 -13.21421 -12.90717 -12.73434 -12.35391 -12.17570 -11.99733 -11.88667 -11.76530 -11.63098 -11.22816 -11.07033 -10.98020 -10.94862 -10.90348 -10.65280 -10.46492 -10.37177 -10.27420 -9.92410 -9.79287 -9.67803 -9.41711 -8.74669 -7.89134 -7.68769 -6.18802 -4.25979 3.22379 3.28663 3.30925 3.31027 4.06613 4.12910 4.37554 4.80110 4.88261 5.02242 5.11638 5.17326 5.19001 5.28955 5.29756 5.50611 5.54605 5.56447 5.63185 5.64286 5.71222 5.76684 5.80397 5.91937 5.92622 5.96910 6.02477 6.10684 6.12211 6.21096 6.22147 6.30060 6.35821 6.42104 6.47511 6.56588 6.69282 7.18331 7.30330 7.34166 7.43604 7.48895 7.64497 7.94904 8.60078 8.75253 9.07568 9.40990 10.91285 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020851 B = 0.004150 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.512146 B = 6745.937826 C = 7467.918515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.116 4.116 4 C 0.070 3.930 5 H 0.083 0.917 6 C -0.081 4.081 7 H 0.068 0.932 8 C -0.140 4.140 9 C -0.116 4.116 10 C -0.112 4.112 11 C 0.039 3.961 12 N -0.507 5.507 13 C 0.027 3.973 14 C 0.467 3.533 15 O -0.553 6.553 16 N -0.711 5.711 17 C 0.250 3.750 18 C -0.544 4.544 19 H 0.063 0.937 20 C 0.064 3.936 21 N -0.886 5.886 22 Si 0.903 3.097 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.040 0.960 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.390 0.610 45 H 0.024 0.976 46 H 0.025 0.975 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 0.338 18.818 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.154 4.154 4 C -0.038 4.038 5 H 0.101 0.899 6 C -0.100 4.100 7 H 0.087 0.913 8 C -0.197 4.197 9 C -0.154 4.154 10 C -0.150 4.150 11 C -0.088 4.088 12 N -0.230 5.230 13 C -0.105 4.105 14 C 0.251 3.749 15 O -0.434 6.434 16 N -0.359 5.359 17 C 0.129 3.871 18 C -0.582 4.582 19 H 0.081 0.919 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.730 3.270 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.222 0.778 45 H 0.042 0.958 46 H 0.043 0.957 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.674 -0.270 19.057 19.071 hybrid contribution -0.505 0.488 -1.737 1.873 sum -1.178 0.218 17.321 17.362 Atomic orbital electron populations 1.21760 0.96085 1.01302 1.01640 1.21518 0.95542 0.97034 1.01992 1.21763 0.94823 0.96743 1.02042 1.21960 0.93819 0.89113 0.98873 0.89904 1.21154 0.94937 0.98805 0.95110 0.91332 1.21819 1.00698 1.01444 0.95749 1.21602 0.95607 0.96893 1.01287 1.21560 0.98886 0.95953 0.98619 1.22264 0.87326 1.00492 0.98760 1.62368 1.05318 1.14298 1.40968 1.22361 1.01658 0.98718 0.87771 1.21823 0.80755 0.85486 0.86841 1.90550 1.39573 1.26357 1.86931 1.46624 1.50527 1.30289 1.08505 1.19065 0.96867 0.93381 0.77784 1.21233 1.32663 1.12529 0.91767 0.91933 1.24950 0.95203 0.95028 0.98782 1.69971 1.39364 1.23124 1.19873 0.86428 0.79767 0.79525 0.81280 1.20443 1.20987 1.19713 0.93041 0.93028 0.92698 0.91973 0.92053 0.91327 0.92166 0.91323 0.92967 0.94103 0.92063 0.92452 0.92163 0.91503 0.91764 0.91493 0.88029 0.88574 0.77761 0.95754 0.95721 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.25 16 2 C -0.12 -1.47 5.50 -26.73 -0.15 -1.62 16 3 C -0.12 -1.48 4.09 -26.74 -0.11 -1.59 16 4 C 0.07 0.99 1.17 -67.72 -0.08 0.91 16 5 H 0.08 1.51 5.53 -51.93 -0.29 1.22 16 6 C -0.08 -0.99 2.43 -90.53 -0.22 -1.21 16 7 H 0.07 0.81 6.67 -51.93 -0.35 0.46 16 8 C -0.14 -1.49 8.38 37.16 0.31 -1.18 16 9 C -0.12 -1.41 5.51 -26.61 -0.15 -1.55 16 10 C -0.11 -1.35 5.74 -26.65 -0.15 -1.50 16 11 C 0.04 0.56 5.07 -3.84 -0.02 0.54 16 12 N -0.51 -7.04 3.97 -228.13 -0.91 -7.95 16 13 C 0.03 0.38 5.33 -4.98 -0.03 0.35 16 14 C 0.47 8.91 7.21 -10.99 -0.08 8.83 16 15 O -0.55 -12.46 11.61 5.56 0.06 -12.40 16 16 N -0.71 -14.66 5.55 -61.47 -0.34 -15.00 16 17 C 0.25 6.58 5.43 -5.19 -0.03 6.56 16 18 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 19 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 22 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.67 6.79 -51.93 -0.35 0.32 16 31 H 0.07 0.80 6.27 -51.93 -0.33 0.48 16 32 H 0.06 0.84 6.12 -51.93 -0.32 0.52 16 33 H 0.07 0.78 6.01 -51.93 -0.31 0.47 16 34 H 0.05 0.54 6.36 -51.93 -0.33 0.21 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.75 6.58 -51.93 -0.34 0.41 16 40 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 41 H 0.07 1.19 5.83 -51.93 -0.30 0.89 16 42 H 0.10 1.29 6.13 -51.93 -0.32 0.97 16 43 H 0.10 1.20 8.10 -51.93 -0.42 0.78 16 44 H 0.39 6.91 8.32 -40.82 -0.34 6.57 16 45 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -30.24 349.91 -9.12 -39.36 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.18 Total: 6.35 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -0.75 Total: -6.05 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.51 Total: -48.33 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.06 Total: -12.40 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.24 -9.12 -39.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744414357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.038 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds