Wall clock time and date at job start Tue Mar 31 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46881 * 2 1 4 4 C 1.53007 * 109.46871 * 174.86714 * 3 2 1 5 5 H 1.08995 * 109.45705 * 182.95854 * 4 3 2 6 6 C 1.53030 * 109.46216 * 62.97586 * 4 3 2 7 7 H 1.09003 * 109.50560 * 300.79329 * 6 4 3 8 8 C 1.53000 * 109.50480 * 60.87519 * 6 4 3 9 9 C 1.53126 * 109.27629 * 180.81735 * 6 4 3 10 10 C 1.53118 * 109.16100 * 57.65146 * 9 6 4 11 11 C 1.53039 * 109.27853 * 302.34922 * 10 9 6 12 12 N 1.46842 * 109.52462 * 59.18015 * 11 10 9 13 13 C 1.46900 * 111.00135 * 174.15898 * 12 11 10 14 14 C 1.50693 * 109.47213 * 288.45918 * 13 12 11 15 15 O 1.21284 * 119.99781 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00216 * 179.97438 * 14 13 12 17 17 C 1.46504 * 120.00268 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.47179 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00234 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00111 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99838 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00223 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47287 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47143 * 119.99755 * 22 20 18 25 25 H 1.48498 * 109.47669 * 240.00051 * 22 20 18 26 26 H 1.09004 * 109.47190 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47542 * 300.00296 * 1 2 3 28 28 H 1.09005 * 109.46728 * 60.00566 * 1 2 3 29 29 H 1.08997 * 109.47229 * 239.99278 * 2 1 3 30 30 H 1.09005 * 109.46728 * 119.99434 * 2 1 3 31 31 H 1.08996 * 109.47191 * 54.86294 * 3 2 1 32 32 H 1.09002 * 109.46950 * 294.85783 * 3 2 1 33 33 H 1.08997 * 109.47035 * 60.00034 * 8 6 4 34 34 H 1.09006 * 109.46983 * 179.97438 * 8 6 4 35 35 H 1.08997 * 109.47165 * 299.99842 * 8 6 4 36 36 H 1.08996 * 109.51885 * 177.56123 * 9 6 4 37 37 H 1.09004 * 109.51973 * 297.68675 * 9 6 4 38 38 H 1.09004 * 109.50263 * 62.28853 * 10 9 6 39 39 H 1.08995 * 109.50026 * 182.36403 * 10 9 6 40 40 H 1.08997 * 109.45677 * 179.19464 * 11 10 9 41 41 H 1.08993 * 109.45857 * 299.16186 * 11 10 9 42 42 H 1.09005 * 109.46551 * 48.45945 * 13 12 11 43 43 H 1.09000 * 109.47223 * 168.45565 * 13 12 11 44 44 H 0.96997 * 119.99818 * 359.97438 * 16 14 13 45 45 H 1.09008 * 109.47007 * 300.00050 * 17 16 14 46 46 H 1.09000 * 109.47313 * 59.99791 * 17 16 14 47 47 H 0.97003 * 120.00079 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5646 1.4444 0.1291 5 1 3.9232 2.4723 0.1819 6 6 4.1802 0.7514 -1.0886 7 1 3.8107 -0.2722 -1.1502 8 6 3.7934 1.5116 -2.3588 9 6 5.7047 0.7377 -0.9452 10 6 6.0805 0.0278 0.3584 11 6 5.4097 0.7418 1.5341 12 7 3.9528 0.7274 1.3504 13 6 3.2684 1.2813 2.5262 14 6 3.3752 0.3101 3.6735 15 8 3.9632 -0.7404 3.5259 16 7 2.8174 0.6088 4.8634 17 6 2.9217 -0.3352 5.9790 18 6 2.2195 0.2330 7.1852 19 1 1.7434 1.2007 7.1269 20 6 2.1847 -0.4825 8.3633 21 7 2.7639 -1.6611 8.4342 22 14 1.3148 0.2221 9.8586 23 1 0.7482 1.5525 9.5205 24 1 0.2192 -0.6918 10.2703 25 1 2.2849 0.3658 10.9737 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6035 1.9822 0.8404 32 1 1.7538 1.9290 -0.9325 33 1 4.1644 2.5346 -2.2972 34 1 4.2326 1.0178 -3.2257 35 1 2.7081 1.5241 -2.4584 36 1 6.1451 0.2068 -1.7892 37 1 6.0778 1.7616 -0.9241 38 1 5.7414 -1.0074 0.3199 39 1 7.1626 0.0517 0.4868 40 1 5.6638 0.2302 2.4623 41 1 5.7597 1.7730 1.5802 42 1 3.7339 2.2265 2.8057 43 1 2.2179 1.4497 2.2893 44 1 2.3475 1.4491 4.9815 45 1 2.4562 -1.2805 5.6998 46 1 3.9723 -0.5035 6.2155 47 1 2.7391 -2.1646 9.2629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744414363.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:12 Heat of formation + Delta-G solvation = -58.853553 kcal Electronic energy + Delta-G solvation = -23429.418880 eV Core-core repulsion = 20225.032684 eV Total energy + Delta-G solvation = -3204.386197 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.08139 -38.27045 -34.87482 -34.38481 -33.86342 -32.28071 -31.54315 -28.65494 -27.47804 -26.31207 -25.68031 -22.92777 -22.36594 -21.60457 -20.93215 -19.50620 -18.97119 -17.10374 -16.14212 -15.71420 -15.49623 -15.04528 -14.81574 -14.59565 -14.31134 -14.16413 -13.73771 -13.64144 -13.28271 -12.78510 -12.70137 -12.63262 -12.33967 -12.12968 -11.92938 -11.86667 -11.60569 -11.37367 -11.30374 -11.16397 -10.93111 -10.87206 -10.77825 -10.63339 -10.38458 -10.29515 -10.09918 -9.99822 -9.35166 -8.92279 -8.70811 -8.06414 -7.79508 -6.14812 -4.21357 3.24257 3.31295 3.34297 3.48062 3.70683 4.28884 4.47946 4.60294 4.69137 4.83067 4.99893 5.13691 5.15140 5.21275 5.24107 5.33605 5.42383 5.46182 5.48810 5.50314 5.56986 5.65920 5.67000 5.72644 5.75483 5.77126 5.87185 5.93610 5.96586 6.03130 6.08125 6.18252 6.22635 6.32453 6.36819 6.47407 6.60148 7.13541 7.28393 7.37993 7.51508 7.56196 7.71746 8.00178 8.69793 8.83375 9.20370 9.45800 10.95431 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024364 B = 0.003685 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.976010 B = 7595.840323 C = 8266.323149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.119 4.119 4 C 0.091 3.909 5 H 0.036 0.964 6 C -0.084 4.084 7 H 0.083 0.917 8 C -0.147 4.147 9 C -0.116 4.116 10 C -0.114 4.114 11 C 0.057 3.943 12 N -0.509 5.509 13 C 0.028 3.972 14 C 0.499 3.501 15 O -0.537 6.537 16 N -0.717 5.717 17 C 0.252 3.748 18 C -0.542 4.542 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.903 3.097 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.023 0.977 42 H 0.054 0.946 43 H 0.103 0.897 44 H 0.388 0.612 45 H 0.026 0.974 46 H 0.025 0.975 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.905 8.472 -20.165 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.156 4.156 4 C -0.018 4.018 5 H 0.054 0.946 6 C -0.103 4.103 7 H 0.101 0.899 8 C -0.205 4.205 9 C -0.153 4.153 10 C -0.152 4.152 11 C -0.071 4.071 12 N -0.233 5.233 13 C -0.103 4.103 14 C 0.283 3.717 15 O -0.415 6.415 16 N -0.367 5.367 17 C 0.131 3.869 18 C -0.580 4.580 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.730 3.270 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.121 0.879 44 H 0.220 0.780 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.227 7.050 -20.167 21.398 hybrid contribution -0.440 1.617 1.121 2.016 sum 0.787 8.666 -19.046 20.939 Atomic orbital electron populations 1.21802 0.96643 1.01457 1.01117 1.21494 0.94595 0.96311 1.03431 1.21822 0.94082 0.98130 1.01606 1.21653 0.95211 0.94791 0.90106 0.94605 1.21190 0.95103 1.00686 0.93309 0.89872 1.21878 1.01524 1.00023 0.97062 1.21662 0.95514 1.00288 0.97851 1.21537 0.99245 1.00669 0.93721 1.22156 0.86535 0.98149 1.00263 1.61498 1.07030 1.54179 1.00608 1.22129 1.01323 0.95885 0.90976 1.20324 0.80018 0.87742 0.83631 1.90641 1.42606 1.25379 1.82850 1.46452 1.55247 1.23018 1.11972 1.19057 0.97420 0.88348 0.82061 1.21274 1.36206 1.04689 0.95826 0.91919 1.24956 0.95399 0.94776 0.98937 1.69989 1.42986 1.12046 1.27267 0.86376 0.79280 0.79046 0.82290 1.19656 1.20805 1.20831 0.92927 0.92938 0.93464 0.92264 0.89984 0.91923 0.91487 0.93028 0.92719 0.92235 0.92096 0.92626 0.90819 0.91871 0.89139 0.95894 0.92777 0.87899 0.77982 0.95609 0.95733 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.16 0.37 -1.24 16 2 C -0.12 -1.39 5.32 -26.73 -0.14 -1.53 16 3 C -0.12 -1.22 4.17 -26.73 -0.11 -1.33 16 4 C 0.09 1.01 1.65 -67.72 -0.11 0.90 16 5 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 6 C -0.08 -0.85 2.14 -90.54 -0.19 -1.04 16 7 H 0.08 0.94 6.58 -51.93 -0.34 0.60 16 8 C -0.15 -1.19 8.87 37.16 0.33 -0.86 16 9 C -0.12 -1.16 5.29 -26.61 -0.14 -1.30 16 10 C -0.11 -1.37 6.09 -26.65 -0.16 -1.53 16 11 C 0.06 0.80 5.11 -3.84 -0.02 0.78 16 12 N -0.51 -7.17 3.21 -228.13 -0.73 -7.90 16 13 C 0.03 0.41 4.94 -4.98 -0.02 0.39 16 14 C 0.50 9.97 7.51 -10.99 -0.08 9.89 16 15 O -0.54 -12.88 14.82 5.55 0.08 -12.80 16 16 N -0.72 -15.17 5.55 -61.47 -0.34 -15.51 16 17 C 0.25 6.73 5.43 -5.19 -0.03 6.70 16 18 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 19 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 22 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.65 6.75 -51.93 -0.35 0.30 16 30 H 0.08 1.21 7.10 -51.93 -0.37 0.84 16 31 H 0.06 0.64 6.17 -51.93 -0.32 0.32 16 32 H 0.07 0.59 6.30 -51.93 -0.33 0.26 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.46 6.39 -51.93 -0.33 0.13 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.57 6.32 -51.93 -0.33 1.24 16 41 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.05 0.72 8.06 -51.93 -0.42 0.30 16 43 H 0.10 1.34 5.41 -51.93 -0.28 1.06 16 44 H 0.39 7.04 8.32 -40.82 -0.34 6.70 16 45 H 0.03 0.77 8.14 -51.92 -0.42 0.34 16 46 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -31.09 358.04 -9.05 -40.15 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -8.44 Total: 3.87 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -0.74 Total: -3.60 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.34 Total: -48.93 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.08 Total: -12.80 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.09 -9.05 -40.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744414363.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.708 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds