Wall clock time and date at job start Tue Mar 31 2020 06:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47166 * 2 1 4 4 C 1.52996 * 109.47353 * 184.10166 * 3 2 1 5 5 H 1.09005 * 109.44946 * 301.70606 * 4 3 2 6 6 C 1.53033 * 109.46374 * 61.67852 * 4 3 2 7 7 H 1.09001 * 109.54123 * 299.16207 * 6 4 3 8 8 C 1.53003 * 109.50123 * 59.25804 * 6 4 3 9 9 C 1.53122 * 109.27917 * 179.19382 * 6 4 3 10 10 C 1.53117 * 109.16210 * 302.34999 * 9 6 4 11 11 C 1.53039 * 109.27595 * 57.65603 * 10 9 6 12 12 N 1.46843 * 109.46385 * 181.73859 * 4 3 2 13 13 C 1.46898 * 111.00535 * 54.14156 * 12 4 3 14 14 C 1.50698 * 109.47744 * 196.41856 * 13 12 4 15 15 O 1.21289 * 119.99668 * 359.72311 * 14 13 12 16 16 N 1.34777 * 120.00321 * 179.97438 * 14 13 12 17 17 C 1.46498 * 119.99965 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46913 * 180.02562 * 17 16 14 19 19 H 1.07994 * 119.99951 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99792 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99865 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99769 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47123 * 60.00634 * 22 20 18 24 24 H 1.48504 * 109.46983 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47531 * 300.00199 * 22 20 18 26 26 H 1.08996 * 109.46717 * 59.99460 * 1 2 3 27 27 H 1.08997 * 109.46708 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46515 * 300.00131 * 1 2 3 29 29 H 1.09002 * 109.46848 * 240.00528 * 2 1 3 30 30 H 1.08993 * 109.46925 * 120.00049 * 2 1 3 31 31 H 1.09006 * 109.47255 * 64.09963 * 3 2 1 32 32 H 1.09001 * 109.47456 * 304.10415 * 3 2 1 33 33 H 1.08995 * 109.47324 * 179.80351 * 8 6 4 34 34 H 1.09001 * 109.47060 * 299.80598 * 8 6 4 35 35 H 1.09006 * 109.47046 * 59.79917 * 8 6 4 36 36 H 1.08996 * 109.52124 * 182.43849 * 9 6 4 37 37 H 1.09001 * 109.56963 * 62.29035 * 9 6 4 38 38 H 1.08997 * 109.50383 * 297.70886 * 10 9 6 39 39 H 1.09002 * 109.50034 * 177.59135 * 10 9 6 40 40 H 1.09008 * 109.45902 * 180.80434 * 11 10 9 41 41 H 1.08998 * 109.46773 * 60.83247 * 11 10 9 42 42 H 1.08996 * 109.46950 * 76.41323 * 13 12 4 43 43 H 1.09006 * 109.46818 * 316.41859 * 13 12 4 44 44 H 0.97002 * 119.99879 * 0.02562 * 16 14 13 45 45 H 1.09006 * 109.47166 * 300.00019 * 17 16 14 46 46 H 1.08996 * 109.46962 * 60.00030 * 17 16 14 47 47 H 0.96998 * 119.99825 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5666 1.4438 -0.1032 5 1 3.9873 0.8832 0.7317 6 6 3.9892 0.7902 -1.4208 7 1 3.6371 -0.2411 -1.4456 8 6 3.3832 1.5650 -2.5927 9 6 5.5164 0.8118 -1.5289 10 6 6.0065 2.2593 -1.4340 11 6 5.5255 2.8702 -0.1159 12 7 4.0587 2.8267 -0.0613 13 6 3.5551 3.5290 1.1266 14 6 3.7297 5.0146 0.9436 15 8 4.2296 5.4456 -0.0739 16 7 3.3351 5.8640 1.9128 17 6 3.5054 7.3081 1.7351 18 6 2.9886 8.0286 2.9537 19 1 2.5744 7.4669 3.7778 20 6 3.0447 9.4048 3.0164 21 7 3.5487 10.0888 2.0125 22 14 2.4035 10.2978 4.5266 23 1 3.1615 9.8531 5.7237 24 1 2.5762 11.7618 4.3465 25 1 0.9627 9.9888 4.7100 26 1 -0.3632 0.5139 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.7380 1.9347 0.9245 32 1 1.6180 1.9772 -0.8509 33 1 3.6873 1.1012 -3.5310 34 1 2.2960 1.5494 -2.5152 35 1 3.7344 2.5966 -2.5667 36 1 5.8199 0.3863 -2.4854 37 1 5.9482 0.2269 -0.7167 38 1 5.6066 2.8344 -2.2691 39 1 7.0959 2.2775 -1.4674 40 1 5.8608 3.9054 -0.0517 41 1 5.9370 2.3029 0.7189 42 1 4.1123 3.2031 2.0048 43 1 2.4977 3.3014 1.2621 44 1 2.9390 5.5190 2.7283 45 1 4.5629 7.5354 1.6003 46 1 2.9488 7.6342 0.8565 47 1 3.5878 11.0570 2.0564 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744414364.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:17 Heat of formation + Delta-G solvation = -56.379149 kcal Electronic energy + Delta-G solvation = -23279.212767 eV Core-core repulsion = 20074.933868 eV Total energy + Delta-G solvation = -3204.278898 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12297 -38.30942 -35.10139 -34.29667 -33.82066 -32.27187 -31.38420 -28.54399 -27.48909 -26.38304 -25.81041 -23.14683 -22.66930 -21.73138 -20.69049 -19.53541 -18.50125 -17.06873 -16.23443 -15.74395 -15.65983 -15.24602 -14.94435 -14.44982 -14.26541 -14.10327 -13.82311 -13.53084 -13.46083 -13.05991 -12.74556 -12.54260 -12.26113 -12.05895 -11.92870 -11.85146 -11.66401 -11.36741 -11.19312 -11.09191 -10.98445 -10.95020 -10.83755 -10.67016 -10.45464 -10.29430 -10.08095 -9.95692 -9.38166 -8.92522 -8.69735 -8.06259 -7.79320 -6.14287 -4.21123 3.26296 3.31056 3.32504 3.48153 3.70331 4.27922 4.45098 4.60129 4.69370 4.87826 4.90173 4.99498 5.07918 5.17361 5.21549 5.26287 5.40240 5.45445 5.52347 5.53953 5.55786 5.63370 5.66584 5.73360 5.74906 5.79830 5.84310 5.91227 5.95606 5.98914 6.08722 6.14571 6.17338 6.28096 6.31389 6.40830 6.63518 7.12407 7.28777 7.37851 7.51472 7.56445 7.71729 8.00574 8.69790 8.83376 9.20561 9.45950 10.95892 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021546 B = 0.003618 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.205027 B = 7736.430018 C = 8608.282454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.123 4.123 4 C 0.091 3.909 5 H 0.036 0.964 6 C -0.081 4.081 7 H 0.071 0.929 8 C -0.143 4.143 9 C -0.117 4.117 10 C -0.116 4.116 11 C 0.057 3.943 12 N -0.509 5.509 13 C 0.027 3.973 14 C 0.499 3.501 15 O -0.537 6.537 16 N -0.718 5.718 17 C 0.252 3.748 18 C -0.543 4.543 19 H 0.062 0.938 20 C 0.064 3.936 21 N -0.886 5.886 22 Si 0.903 3.097 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.023 0.977 42 H 0.055 0.945 43 H 0.103 0.897 44 H 0.388 0.612 45 H 0.025 0.975 46 H 0.026 0.974 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 -21.969 -4.027 22.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.161 4.161 4 C -0.017 4.017 5 H 0.054 0.946 6 C -0.100 4.100 7 H 0.089 0.911 8 C -0.200 4.200 9 C -0.155 4.155 10 C -0.153 4.153 11 C -0.070 4.070 12 N -0.234 5.234 13 C -0.104 4.104 14 C 0.283 3.717 15 O -0.415 6.415 16 N -0.367 5.367 17 C 0.132 3.868 18 C -0.582 4.582 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.730 3.270 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.041 0.959 42 H 0.073 0.927 43 H 0.121 0.879 44 H 0.220 0.780 45 H 0.043 0.957 46 H 0.044 0.956 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.761 -21.177 -5.251 21.832 hybrid contribution -0.212 0.020 2.035 2.046 sum -0.973 -21.157 -3.216 21.422 Atomic orbital electron populations 1.21767 0.95856 1.01323 1.02006 1.21560 0.95825 0.96812 1.01918 1.21881 0.94389 0.96814 1.02999 1.21628 0.94894 0.88532 0.96669 0.94630 1.21174 0.95197 0.98696 0.94933 0.91122 1.21835 1.00362 1.01952 0.95896 1.21644 0.95438 0.97129 1.01246 1.21585 0.99611 0.95562 0.98573 1.22152 0.86584 1.02103 0.96174 1.61475 1.09709 1.13510 1.38659 1.22146 1.02359 0.93523 0.92351 1.20332 0.79439 0.87812 0.84142 1.90640 1.43904 1.78731 1.28216 1.46452 1.61764 1.09515 1.18976 1.19048 0.97289 0.73281 0.97219 1.21205 1.42416 0.91897 1.02654 0.92018 1.24951 0.95028 0.97359 0.96655 1.69969 1.44108 1.07429 1.30808 0.86487 0.79365 0.78532 0.82586 1.20102 1.21075 1.20076 0.92647 0.93004 0.92748 0.91656 0.92378 0.91652 0.90334 0.93860 0.92855 0.90557 0.92050 0.92671 0.90496 0.91974 0.89194 0.95884 0.92707 0.87905 0.77980 0.95728 0.95621 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.03 5.73 -26.73 -0.15 -1.18 16 3 C -0.12 -1.26 4.10 -26.73 -0.11 -1.37 16 4 C 0.09 1.02 1.64 -67.73 -0.11 0.91 16 5 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 6 C -0.08 -0.83 2.41 -90.54 -0.22 -1.05 16 7 H 0.07 0.63 6.43 -51.93 -0.33 0.29 16 8 C -0.14 -1.58 8.37 37.16 0.31 -1.27 16 9 C -0.12 -1.18 5.51 -26.61 -0.15 -1.32 16 10 C -0.12 -1.39 5.74 -26.65 -0.15 -1.55 16 11 C 0.06 0.81 5.11 -3.83 -0.02 0.80 16 12 N -0.51 -7.22 3.40 -228.13 -0.78 -7.99 16 13 C 0.03 0.40 5.27 -4.98 -0.03 0.38 16 14 C 0.50 10.02 7.52 -10.99 -0.08 9.94 16 15 O -0.54 -12.95 14.86 5.55 0.08 -12.87 16 16 N -0.72 -15.21 5.55 -61.47 -0.34 -15.55 16 17 C 0.25 6.76 5.43 -5.19 -0.03 6.73 16 18 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 19 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 22 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.52 6.29 -51.93 -0.33 0.20 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.68 5.89 -51.93 -0.31 0.37 16 32 H 0.08 0.90 6.33 -51.93 -0.33 0.57 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.57 6.39 -51.93 -0.33 0.24 16 35 H 0.08 1.04 6.01 -51.93 -0.31 0.73 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 1.03 6.58 -51.93 -0.34 0.69 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.56 6.37 -51.92 -0.33 1.23 16 41 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.05 0.73 8.05 -51.93 -0.42 0.31 16 43 H 0.10 1.33 5.34 -51.93 -0.28 1.06 16 44 H 0.39 7.04 8.32 -40.82 -0.34 6.70 16 45 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -31.23 355.05 -9.01 -40.23 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -8.25 Total: 3.78 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -0.79 Total: -3.31 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -0.38 Total: -49.10 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.23 -9.01 -40.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744414364.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.146 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds