Wall clock time and date at job start Tue Mar 31 2020 06:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47018 * 2 1 4 4 C 1.52997 * 109.47086 * 119.99841 * 2 1 3 5 5 N 1.46906 * 109.46895 * 66.06514 * 4 2 1 6 6 C 1.46903 * 110.99725 * 86.02423 * 5 4 2 7 7 C 1.50700 * 109.47005 * 278.01156 * 6 5 4 8 8 O 1.21277 * 120.00079 * 352.49430 * 7 6 5 9 9 N 1.34782 * 119.99625 * 172.49297 * 7 6 5 10 10 C 1.46501 * 119.99798 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.46724 * 180.02562 * 10 9 7 12 12 H 1.07996 * 120.00522 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99583 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99978 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00113 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47065 * 59.99433 * 15 13 11 17 17 H 1.48493 * 109.47574 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46891 * 299.99970 * 15 13 11 19 19 C 1.46900 * 111.00012 * 209.97719 * 5 4 2 20 20 C 1.54266 * 110.03082 * 289.89155 * 19 5 4 21 21 C 1.54962 * 104.15736 * 217.13716 * 20 19 5 22 22 C 1.54886 * 102.78247 * 37.88739 * 21 20 19 23 23 C 1.53876 * 110.03114 * 172.67544 * 19 5 4 24 24 H 1.08993 * 109.47060 * 186.53972 * 1 2 3 25 25 H 1.09001 * 109.46995 * 306.54249 * 1 2 3 26 26 H 1.09001 * 109.46788 * 66.54061 * 1 2 3 27 27 H 1.08997 * 109.47211 * 240.00198 * 2 1 3 28 28 H 1.08998 * 109.46515 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47034 * 299.99652 * 3 2 1 30 30 H 1.08997 * 109.46969 * 60.00049 * 3 2 1 31 31 H 1.08999 * 109.47258 * 306.06883 * 4 2 1 32 32 H 1.08996 * 109.47316 * 186.06300 * 4 2 1 33 33 H 1.08995 * 109.47219 * 38.01427 * 6 5 4 34 34 H 1.08999 * 109.47233 * 158.01018 * 6 5 4 35 35 H 0.97004 * 120.00022 * 0.02562 * 9 7 6 36 36 H 1.09003 * 109.46928 * 299.99979 * 10 9 7 37 37 H 1.08997 * 109.47033 * 59.99838 * 10 9 7 38 38 H 0.97003 * 120.00005 * 180.02562 * 14 13 11 39 39 H 1.08997 * 110.01294 * 51.28063 * 19 5 4 40 40 H 1.08996 * 110.48611 * 335.78331 * 20 19 5 41 41 H 1.08996 * 110.48586 * 98.43185 * 20 19 5 42 42 H 1.09002 * 110.71843 * 279.57476 * 21 20 19 43 43 H 1.09002 * 110.92465 * 156.30036 * 21 20 19 44 44 H 1.08991 * 110.49227 * 203.40764 * 22 21 20 45 45 H 1.09000 * 110.59778 * 80.81671 * 22 21 20 46 46 H 1.09000 * 110.02769 * 238.57161 * 23 19 5 47 47 H 1.08995 * 110.03324 * 359.97438 * 23 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6735 -2.1420 1.1783 6 6 2.6791 -2.9084 0.4304 7 6 2.4239 -2.7637 -1.0478 8 8 1.4211 -2.2042 -1.4381 9 7 3.3100 -3.2560 -1.9360 10 6 3.0616 -3.1159 -3.3730 11 6 4.1939 -3.7462 -4.1422 12 1 5.0160 -4.2056 -3.6137 13 6 4.1801 -3.7363 -5.5209 14 7 3.1788 -3.1773 -6.1646 15 14 5.5832 -4.5182 -6.4746 16 1 5.6755 -5.9590 -6.1270 17 1 5.3315 -4.3761 -7.9311 18 1 6.8577 -3.8417 -6.1236 19 6 1.4764 -2.7026 2.5218 20 6 2.8301 -2.8082 3.2540 21 6 2.7229 -4.1271 4.0605 22 6 1.9519 -5.0588 3.0927 23 6 0.9180 -4.1328 2.4194 24 1 -0.3633 -1.0209 0.1170 25 1 -0.3633 0.6119 0.8257 26 1 -0.3633 0.4091 -0.9427 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.5907 -0.2739 2.1359 32 1 3.1246 -0.6282 1.3052 33 1 3.6737 -2.5299 0.6661 34 1 2.6154 -3.9603 0.7088 35 1 4.1118 -3.7039 -1.6238 36 1 2.1266 -3.6135 -3.6303 37 1 2.9926 -2.0585 -3.6283 38 1 3.1689 -3.1707 -7.1345 39 1 0.7917 -2.0742 3.0914 40 1 3.6485 -2.8655 2.5365 41 1 2.9681 -1.9602 3.9248 42 1 2.1578 -3.9722 4.9797 43 1 3.7113 -4.5307 4.2799 44 1 1.4500 -5.8524 3.6460 45 1 2.6268 -5.4818 2.3486 46 1 -0.0373 -4.1987 2.9402 47 1 0.7928 -4.4108 1.3730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746152389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:26 Heat of formation + Delta-G solvation = -48.830850 kcal Electronic energy + Delta-G solvation = -23607.879953 eV Core-core repulsion = 20403.928373 eV Total energy + Delta-G solvation = -3203.951580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.98242 -38.14436 -36.08236 -34.01910 -33.47547 -32.24193 -28.97973 -28.75965 -27.38920 -26.66344 -26.44479 -23.74914 -22.36766 -20.88888 -19.96491 -19.50089 -18.98901 -17.32571 -16.48777 -15.80713 -15.66794 -15.15101 -14.87440 -14.52470 -14.06182 -13.86426 -13.72997 -13.56073 -13.27280 -12.78718 -12.40091 -12.33933 -11.94799 -11.86406 -11.79029 -11.65663 -11.37286 -11.25169 -11.19183 -11.14888 -10.98463 -10.87384 -10.75184 -10.64968 -10.46978 -10.28740 -10.23989 -9.81864 -9.37445 -8.87083 -8.65724 -8.04206 -7.73209 -6.14038 -4.20702 3.26232 3.31177 3.32482 3.48233 3.71584 4.29052 4.43260 4.50181 4.62193 4.77157 5.08986 5.21811 5.25368 5.31636 5.34014 5.38303 5.43536 5.49369 5.52201 5.56403 5.60532 5.63396 5.74269 5.77214 5.80008 5.82104 5.94452 6.00535 6.11963 6.18476 6.19840 6.23137 6.28038 6.38518 6.59459 6.95632 7.00478 7.11772 7.32596 7.38113 7.55043 7.57226 7.73152 8.01175 8.71078 8.84540 9.22857 9.46576 10.96043 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016303 B = 0.004429 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.113325 B = 6320.782161 C = 7447.669192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 C -0.146 4.146 4 C 0.067 3.933 5 N -0.507 5.507 6 C 0.032 3.968 7 C 0.493 3.507 8 O -0.521 6.521 9 N -0.719 5.719 10 C 0.254 3.746 11 C -0.543 4.543 12 H 0.061 0.939 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.902 3.098 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.276 1.276 19 C 0.084 3.916 20 C -0.162 4.162 21 C -0.121 4.121 22 C -0.128 4.128 23 C -0.122 4.122 24 H 0.070 0.930 25 H 0.029 0.971 26 H 0.041 0.959 27 H 0.107 0.893 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.387 0.613 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.266 0.734 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 1.176 20.035 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.126 4.126 3 C -0.204 4.204 4 C -0.060 4.060 5 N -0.230 5.230 6 C -0.099 4.099 7 C 0.277 3.723 8 O -0.399 6.399 9 N -0.368 5.368 10 C 0.133 3.867 11 C -0.581 4.581 12 H 0.079 0.921 13 C -0.139 4.139 14 N -0.523 5.523 15 Si 0.729 3.271 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.025 4.025 20 C -0.201 4.201 21 C -0.159 4.159 22 C -0.165 4.165 23 C -0.160 4.160 24 H 0.089 0.911 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.125 0.875 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.219 0.781 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.074 1.602 19.264 19.442 hybrid contribution 1.979 -0.533 0.001 2.049 sum -0.095 1.069 19.265 19.295 Atomic orbital electron populations 1.21509 0.94935 1.02106 0.99180 1.21492 0.97065 0.94185 0.99874 1.21854 1.00274 0.97231 1.01027 1.22225 0.97547 0.87523 0.98742 1.61752 1.45213 1.02047 1.13939 1.22144 0.94218 1.00197 0.93353 1.20373 0.84274 0.79992 0.87635 1.90596 1.27327 1.41501 1.80451 1.46473 1.23445 1.57839 1.09072 1.19029 0.96931 0.97314 0.73444 1.21202 1.06650 1.38702 0.91586 0.92084 1.24938 0.96243 0.95217 0.97547 1.69964 1.30582 1.43202 1.08532 0.86503 0.82067 0.79721 0.78776 1.20105 1.21084 1.20120 1.22486 0.95418 0.96250 0.88324 1.23175 0.99217 0.97996 0.99694 1.22427 1.00085 0.95316 0.98036 1.22414 0.97969 0.97738 0.98405 1.22248 0.98251 0.93398 1.02079 0.91120 0.95221 0.93984 0.87533 0.93506 0.92752 0.93719 0.91921 0.94915 0.92454 0.88497 0.78102 0.95682 0.95729 0.92442 0.89799 0.91104 0.91838 0.91646 0.91845 0.91727 0.91628 0.91505 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 8.67 37.16 0.32 -1.55 16 2 C -0.11 -1.68 2.42 -90.62 -0.22 -1.90 16 3 C -0.15 -1.97 9.19 37.16 0.34 -1.63 16 4 C 0.07 0.90 3.99 -3.82 -0.02 0.88 16 5 N -0.51 -6.89 3.30 -226.74 -0.75 -7.63 16 6 C 0.03 0.46 3.92 -4.97 -0.02 0.44 16 7 C 0.49 9.53 6.99 -10.98 -0.08 9.46 16 8 O -0.52 -11.82 12.57 5.56 0.07 -11.75 16 9 N -0.72 -14.89 5.55 -61.47 -0.34 -15.23 16 10 C 0.25 6.67 5.43 -5.19 -0.03 6.65 16 11 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 12 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 13 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 15 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 19 C 0.08 0.91 2.88 -66.59 -0.19 0.72 16 20 C -0.16 -1.51 5.76 -25.03 -0.14 -1.65 16 21 C -0.12 -0.99 6.91 -24.70 -0.17 -1.16 16 22 C -0.13 -1.14 6.56 -25.07 -0.16 -1.30 16 23 C -0.12 -1.28 5.75 -25.61 -0.15 -1.43 16 24 H 0.07 1.22 7.44 -51.93 -0.39 0.84 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.11 2.09 4.48 -51.93 -0.23 1.86 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.75 7.59 -51.93 -0.39 0.35 16 32 H 0.03 0.42 7.44 -51.93 -0.39 0.04 16 33 H 0.06 0.74 6.48 -51.93 -0.34 0.41 16 34 H 0.10 1.25 5.64 -51.93 -0.29 0.96 16 35 H 0.39 6.94 8.32 -40.82 -0.34 6.60 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.08 0.88 7.85 -51.93 -0.41 0.48 16 40 H 0.07 0.71 5.89 -51.93 -0.31 0.41 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.61 7.70 -51.93 -0.40 0.21 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.08 1.00 6.94 -51.93 -0.36 0.64 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -30.13 358.17 -9.29 -39.41 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -8.45 Total: 5.17 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.93 Total: -5.83 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.35 Total: -48.26 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.07 Total: -11.75 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.13 -9.29 -39.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746152389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.416 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds