Wall clock time and date at job start Tue Mar 31 2020 05:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.47210 * 2 1 4 4 C 1.52997 * 109.47165 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47202 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46623 * 304.99311 * 5 4 3 7 7 N 1.46900 * 109.47310 * 64.99574 * 5 4 3 8 8 C 1.46902 * 110.99715 * 206.36447 * 7 5 4 9 9 C 1.50706 * 109.46742 * 174.39565 * 8 7 5 10 10 O 1.21276 * 120.00131 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99632 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99906 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47476 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99688 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00472 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99884 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00383 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47067 * 89.99523 * 17 15 13 19 19 H 1.48496 * 109.46926 * 209.99859 * 17 15 13 20 20 H 1.48499 * 109.46961 * 329.99803 * 17 15 13 21 21 C 1.53001 * 109.47307 * 184.99684 * 5 4 3 22 22 C 1.53774 * 113.61305 * 155.05301 * 21 5 4 23 23 C 1.53783 * 87.08529 * 220.01922 * 22 21 5 24 24 C 1.53783 * 113.61247 * 57.55609 * 21 5 4 25 25 H 1.09004 * 109.46841 * 300.00288 * 1 2 3 26 26 H 1.09002 * 109.46891 * 59.99965 * 1 2 3 27 27 H 1.09000 * 109.47356 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47156 * 239.99990 * 2 1 3 29 29 H 1.09002 * 109.47555 * 119.99682 * 2 1 3 30 30 H 1.09002 * 109.46602 * 300.00266 * 3 2 1 31 31 H 1.08993 * 109.47069 * 59.99936 * 3 2 1 32 32 H 1.09002 * 109.46592 * 299.99824 * 4 3 2 33 33 H 1.08996 * 109.47314 * 59.99312 * 4 3 2 34 34 H 1.00894 * 111.00355 * 82.40634 * 7 5 4 35 35 H 1.09003 * 109.46784 * 294.38734 * 8 7 5 36 36 H 1.08993 * 109.47357 * 54.39484 * 8 7 5 37 37 H 0.97000 * 119.99823 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.47213 * 300.00491 * 12 11 9 39 39 H 1.09001 * 109.47209 * 59.99840 * 12 11 9 40 40 H 0.96993 * 120.00044 * 180.02562 * 16 15 13 41 41 H 1.09002 * 112.84740 * 286.36585 * 21 5 4 42 42 H 1.09002 * 113.62109 * 334.57000 * 22 21 5 43 43 H 1.09005 * 113.61276 * 105.47341 * 22 21 5 44 44 H 1.08997 * 113.61522 * 270.89231 * 23 22 21 45 45 H 1.08999 * 113.69222 * 139.99238 * 23 22 21 46 46 H 1.08990 * 113.61987 * 254.53172 * 24 21 5 47 47 H 1.09007 * 113.61395 * 25.43674 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 0.0000 6 1 3.6451 3.4245 -0.8414 7 7 3.6919 3.5412 1.2557 8 6 3.5816 4.9952 1.0777 9 6 3.0506 5.6173 2.3435 10 8 2.7893 4.9183 3.2995 11 7 2.8661 6.9506 2.4131 12 6 2.3494 7.5553 3.6433 13 6 2.2364 9.0470 3.4608 14 1 2.5213 9.4993 2.5224 15 6 1.7702 9.8343 4.4921 16 7 1.4236 9.2836 5.6350 17 14 1.6293 11.6832 4.2657 18 1 0.2832 12.0157 3.7341 19 1 1.8258 12.3584 5.5736 20 1 2.6671 12.1452 3.3093 21 6 5.6048 2.8870 -0.1263 22 6 6.1711 4.1823 -0.7313 23 6 7.1578 3.2951 -1.5085 24 6 6.1196 2.1674 -1.3841 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.9336 0.9286 0.8892 33 1 3.9330 0.9288 -0.8907 34 1 4.3386 3.3156 1.9966 35 1 4.5647 5.4094 0.8540 36 1 2.9008 5.2098 0.2541 37 1 3.0747 7.5096 1.6483 38 1 1.3661 7.1414 3.8665 39 1 3.0297 7.3403 4.4674 40 1 1.0953 9.8375 6.3604 41 1 6.1058 2.5760 0.7905 42 1 5.4639 4.7119 -1.3697 43 1 6.6514 4.8323 0.0002 44 1 8.0844 3.0968 -0.9698 45 1 7.3264 3.6222 -2.5345 46 1 6.5582 1.1907 -1.1798 47 1 5.3982 2.1460 -2.2010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754351616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:21 Heat of formation + Delta-G solvation = -50.653466 kcal Electronic energy + Delta-G solvation = -22314.115949 eV Core-core repulsion = 19110.085335 eV Total energy + Delta-G solvation = -3204.030614 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.83276 -38.54931 -36.22876 -34.61478 -34.02042 -32.29345 -31.09918 -28.13880 -27.07010 -25.83023 -25.13538 -23.73893 -22.28710 -21.08647 -20.76751 -19.86655 -19.38564 -17.09748 -16.17858 -16.03169 -15.53978 -15.46460 -15.13559 -14.64752 -14.50598 -14.10952 -13.71965 -13.62920 -13.30148 -12.83288 -12.67105 -12.63228 -12.34986 -12.24456 -12.04956 -11.87629 -11.49986 -11.42217 -11.23533 -11.07205 -10.96478 -10.86834 -10.85485 -10.67725 -10.61130 -10.44642 -10.30158 -10.19016 -9.37603 -8.97224 -8.71213 -8.15330 -7.81738 -6.14983 -4.21819 3.24914 3.30866 3.33239 3.46246 3.86689 4.28619 4.32995 4.44600 4.47483 4.63453 4.69367 4.87902 4.97826 5.10986 5.14931 5.20970 5.27194 5.39450 5.44234 5.48355 5.50087 5.50997 5.60470 5.63810 5.67838 5.70390 5.75324 5.80313 5.82862 5.92000 6.00568 6.03615 6.06202 6.17192 6.25150 6.36577 6.56862 7.05329 7.35761 7.47808 7.50458 7.55487 7.70481 7.99723 8.68252 8.81989 9.17940 9.45159 10.95261 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015627 B = 0.003327 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.319474 B = 8413.641588 C = 9795.966317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.115 4.115 4 C -0.103 4.103 5 C 0.098 3.902 6 H 0.076 0.924 7 N -0.661 5.661 8 C 0.041 3.959 9 C 0.496 3.504 10 O -0.543 6.543 11 N -0.716 5.716 12 C 0.251 3.749 13 C -0.543 4.543 14 H 0.062 0.938 15 C 0.063 3.937 16 N -0.885 5.885 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.142 4.142 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.130 4.130 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.349 0.651 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.389 0.611 38 H 0.026 0.974 39 H 0.025 0.975 40 H 0.266 0.734 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.589 -15.165 -16.444 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.153 4.153 4 C -0.141 4.141 5 C -0.012 4.012 6 H 0.094 0.906 7 N -0.292 5.292 8 C -0.092 4.092 9 C 0.280 3.720 10 O -0.420 6.420 11 N -0.366 5.366 12 C 0.130 3.870 13 C -0.581 4.581 14 H 0.080 0.920 15 C -0.141 4.141 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.162 4.162 22 C -0.177 4.177 23 C -0.181 4.181 24 C -0.168 4.168 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.168 0.832 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.221 0.779 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.628 -15.712 -15.608 23.117 hybrid contribution 0.964 1.640 -0.446 1.954 sum 7.592 -14.072 -16.055 22.659 Atomic orbital electron populations 1.21773 0.96177 1.01095 1.01982 1.21535 0.95706 0.97587 1.01298 1.21539 0.94962 0.95857 1.02893 1.21517 0.96026 0.95118 1.01399 1.21689 0.91342 0.95723 0.92474 0.90574 1.60176 1.55603 1.06849 1.06523 1.21883 1.00548 0.89378 0.97412 1.20425 0.79405 0.82998 0.89196 1.90658 1.51400 1.61574 1.38415 1.46449 1.65149 1.06280 1.18703 1.19064 0.94643 0.92150 0.81111 1.21234 1.45470 0.91399 1.00002 0.91957 1.24956 0.94920 0.99283 0.94893 1.69976 1.42700 1.35957 1.03659 0.86421 0.78515 0.84406 0.77604 1.20456 1.21019 1.19774 1.23375 0.97142 0.97262 0.98377 1.23002 0.98817 0.96279 0.99581 1.22818 0.97462 0.97349 1.00452 1.22854 0.98373 0.97720 0.97893 0.92477 0.92994 0.93255 0.92803 0.92284 0.92916 0.90139 0.92023 0.92140 0.83201 0.92795 0.88981 0.77914 0.95610 0.95687 0.92466 0.89214 0.90070 0.91562 0.90431 0.91672 0.91677 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.17 5.93 -26.73 -0.16 -1.33 16 3 C -0.11 -1.22 5.10 -26.73 -0.14 -1.36 16 4 C -0.10 -0.98 4.75 -26.73 -0.13 -1.11 16 5 C 0.10 0.98 1.90 -67.71 -0.13 0.85 16 6 H 0.08 0.77 7.44 -51.93 -0.39 0.38 16 7 N -0.66 -8.73 5.24 -107.99 -0.57 -9.29 16 8 C 0.04 0.57 5.88 -4.97 -0.03 0.54 16 9 C 0.50 9.89 7.88 -10.98 -0.09 9.80 16 10 O -0.54 -13.19 16.32 5.56 0.09 -13.10 16 11 N -0.72 -15.14 5.55 -61.47 -0.34 -15.48 16 12 C 0.25 6.74 5.43 -5.20 -0.03 6.71 16 13 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 14 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 17 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 C -0.14 -1.25 3.23 -89.81 -0.29 -1.54 16 22 C -0.14 -1.21 6.17 -25.92 -0.16 -1.37 16 23 C -0.14 -1.10 8.08 -25.91 -0.21 -1.31 16 24 C -0.13 -0.99 6.51 -25.91 -0.17 -1.15 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.08 7.75 -51.93 -0.40 0.68 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.50 7.14 -51.93 -0.37 0.13 16 34 H 0.35 4.84 8.26 -39.29 -0.32 4.52 16 35 H 0.05 0.66 6.72 -51.93 -0.35 0.31 16 36 H 0.09 1.16 7.91 -51.93 -0.41 0.75 16 37 H 0.39 7.01 8.32 -40.82 -0.34 6.67 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.09 0.84 7.99 -51.93 -0.41 0.43 16 42 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 43 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.59 8.01 -51.93 -0.42 0.17 16 LS Contribution 375.92 15.07 5.67 5.67 Total: -1.00 -31.32 375.92 -9.86 -41.18 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -8.85 Total: 6.52 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -1.57 Total: -5.83 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.17 Total: -50.35 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.32 -9.86 -41.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754351616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.478 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds