Wall clock time and date at job start Tue Mar 31 2020 05:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47247 * 2 1 4 4 C 1.53000 * 109.47247 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47247 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47594 * 54.99523 * 5 4 3 7 7 N 1.46902 * 109.47181 * 294.99935 * 5 4 3 8 8 C 1.46900 * 111.00165 * 153.21031 * 7 5 4 9 9 C 1.50706 * 109.47107 * 185.34980 * 8 7 5 10 10 O 1.21286 * 119.99832 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99885 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99737 * 180.02562 * 11 9 8 13 13 C 1.50707 * 109.47008 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99817 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99892 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99589 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99991 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47123 * 90.00781 * 17 15 13 19 19 H 1.48501 * 109.47185 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47664 * 330.00439 * 17 15 13 21 21 C 1.52999 * 109.47192 * 174.99982 * 5 4 3 22 22 C 1.53777 * 113.61438 * 36.18814 * 21 5 4 23 23 C 1.53958 * 87.01967 * 220.04844 * 22 21 5 24 24 C 1.53786 * 113.61194 * 298.57797 * 21 5 4 25 25 H 1.09003 * 109.47474 * 300.00540 * 1 2 3 26 26 H 1.09006 * 109.47130 * 59.99681 * 1 2 3 27 27 H 1.08995 * 109.47555 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46969 * 239.99885 * 2 1 3 29 29 H 1.08995 * 109.47019 * 119.99562 * 2 1 3 30 30 H 1.09003 * 109.47325 * 59.99368 * 3 2 1 31 31 H 1.09006 * 109.47316 * 300.00205 * 3 2 1 32 32 H 1.08995 * 109.47019 * 299.99562 * 4 3 2 33 33 H 1.08996 * 109.46969 * 59.99885 * 4 3 2 34 34 H 1.00898 * 111.00102 * 277.16613 * 7 5 4 35 35 H 1.09002 * 109.47033 * 305.34880 * 8 7 5 36 36 H 1.08999 * 109.47068 * 65.35156 * 8 7 5 37 37 H 0.96994 * 119.99901 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.47144 * 299.99894 * 12 11 9 39 39 H 1.08999 * 109.47108 * 60.00263 * 12 11 9 40 40 H 0.97002 * 119.99320 * 180.02562 * 16 15 13 41 41 H 1.09005 * 112.85328 * 167.38627 * 21 5 4 42 42 H 1.09002 * 113.61316 * 334.56700 * 22 21 5 43 43 H 1.08992 * 113.61825 * 105.47391 * 22 21 5 44 44 H 1.09001 * 113.53831 * 270.81377 * 23 22 21 45 45 H 1.08998 * 113.74442 * 139.93938 * 23 22 21 46 46 H 1.09000 * 113.61283 * 254.52382 * 24 21 5 47 47 H 1.08996 * 113.61175 * 25.43792 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6458 3.4236 0.8423 7 7 3.6909 3.5425 -1.2547 8 6 3.5709 4.9952 -1.0726 9 6 3.0451 5.6186 -2.3399 10 8 2.7946 4.9213 -3.3001 11 7 2.8524 6.9509 -2.4059 12 6 2.3407 7.5568 -3.6376 13 6 2.2165 9.0470 -3.4504 14 1 2.4917 9.4977 -2.5082 15 6 1.7517 9.8350 -4.4819 16 7 1.6438 11.1355 -4.3186 17 14 1.2765 9.0556 -6.1116 18 1 -0.1602 8.6813 -6.0811 19 1 1.5121 10.0252 -7.2114 20 1 2.0998 7.8407 -6.3381 21 6 5.6049 2.8867 0.1251 22 6 6.2855 1.7270 -0.6210 23 6 7.2366 1.6157 0.5846 24 6 6.1169 2.2488 1.4274 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 3.9337 0.9286 0.8891 33 1 3.9329 0.9288 -0.8908 34 1 4.3410 3.3233 -1.9945 35 1 2.8831 5.2030 -0.2529 36 1 4.5500 5.4144 -0.8405 37 1 3.0517 7.5084 -1.6376 38 1 3.0284 7.3493 -4.4575 39 1 1.3618 7.1373 -3.8694 40 1 1.3164 11.6898 -5.0442 41 1 6.0459 3.8608 -0.0867 42 1 5.6436 0.8559 -0.7525 43 1 6.7812 2.0318 -1.5426 44 1 8.1247 2.2417 0.4976 45 1 7.4684 0.5889 0.8674 46 1 6.4767 2.9744 2.1569 47 1 5.4288 1.5207 1.8568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754351618.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:24 Heat of formation + Delta-G solvation = -42.373566 kcal Electronic energy + Delta-G solvation = -22363.365482 eV Core-core repulsion = 19159.693911 eV Total energy + Delta-G solvation = -3203.671571 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.02479 -38.76153 -36.11611 -34.74811 -34.14673 -32.33921 -31.04936 -28.53532 -27.35722 -25.98571 -25.14522 -23.91473 -21.88923 -21.38821 -21.09978 -19.83361 -18.88735 -17.29398 -16.34411 -16.02233 -15.80699 -15.64423 -15.26958 -14.79317 -14.48222 -14.27651 -13.78240 -13.65812 -13.23206 -12.99795 -12.85374 -12.62498 -12.49134 -12.45482 -12.29813 -11.98177 -11.80892 -11.57751 -11.15319 -11.07135 -11.00703 -10.90215 -10.75071 -10.61578 -10.52977 -10.40161 -10.22531 -9.96177 -9.48579 -9.15569 -8.76771 -8.27382 -8.09182 -6.20955 -4.23021 3.26601 3.30670 3.34252 3.43132 3.72989 4.31862 4.34550 4.35226 4.48196 4.58379 4.67174 4.73576 4.92431 5.04788 5.14367 5.18688 5.19853 5.24283 5.37088 5.40899 5.47023 5.48477 5.56232 5.57750 5.60641 5.66529 5.74129 5.74997 5.79024 5.88753 5.90627 5.99313 6.06888 6.12134 6.28587 6.32331 6.50839 6.80408 7.00921 7.09359 7.27018 7.40001 7.43623 8.16351 8.54751 8.76666 8.99390 9.39645 10.91056 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016827 B = 0.003357 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.639122 B = 8339.754739 C = 9434.802078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.116 4.116 4 C -0.105 4.105 5 C 0.097 3.903 6 H 0.077 0.923 7 N -0.661 5.661 8 C 0.041 3.959 9 C 0.498 3.502 10 O -0.545 6.545 11 N -0.709 5.709 12 C 0.222 3.778 13 C -0.543 4.543 14 H 0.079 0.921 15 C 0.077 3.923 16 N -0.893 5.893 17 Si 0.878 3.122 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.261 1.261 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.142 4.142 24 C -0.134 4.134 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.349 0.651 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.395 0.605 38 H 0.024 0.976 39 H 0.020 0.980 40 H 0.267 0.733 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.111 -20.866 12.955 25.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.153 4.153 4 C -0.143 4.143 5 C -0.013 4.013 6 H 0.095 0.905 7 N -0.292 5.292 8 C -0.092 4.092 9 C 0.283 3.717 10 O -0.422 6.422 11 N -0.359 5.359 12 C 0.099 3.901 13 C -0.581 4.581 14 H 0.097 0.903 15 C -0.127 4.127 16 N -0.531 5.531 17 Si 0.704 3.296 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.185 1.185 21 C -0.164 4.164 22 C -0.180 4.180 23 C -0.180 4.180 24 C -0.172 4.172 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.169 0.831 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.228 0.772 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.180 -21.276 12.223 25.303 hybrid contribution 0.799 0.492 -0.387 1.016 sum 6.979 -20.783 11.836 24.915 Atomic orbital electron populations 1.21772 0.96155 1.01118 1.01981 1.21533 0.95736 0.97566 1.01295 1.21549 0.94957 0.95873 1.02927 1.21660 0.95981 0.95226 1.01440 1.21575 0.91600 0.95769 0.92355 0.90483 1.60167 1.55365 1.06847 1.06842 1.21841 1.00653 0.89410 0.97261 1.20456 0.79119 0.82807 0.89346 1.90653 1.51695 1.61679 1.38219 1.46171 1.65248 1.06441 1.17994 1.19458 0.94152 0.93649 0.82792 1.21108 1.45896 0.89227 1.01871 0.90299 1.24804 0.94460 0.94673 0.98740 1.69887 1.45726 1.04170 1.33280 0.86805 0.79820 0.79728 0.83263 1.19829 1.20929 1.18515 1.23313 0.96841 0.98665 0.97579 1.23124 0.98422 0.99119 0.97286 1.22819 0.97149 1.00855 0.97170 1.22933 0.98164 0.99993 0.96140 0.92960 0.92514 0.93237 0.92310 0.92774 0.92836 0.90181 0.92055 0.91507 0.83116 0.88579 0.92884 0.77165 0.95846 0.96205 0.92280 0.89537 0.89056 0.91745 0.90549 0.91696 0.91796 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.12 -1.11 5.93 -26.73 -0.16 -1.27 16 3 C -0.12 -1.16 5.10 -26.73 -0.14 -1.30 16 4 C -0.11 -0.94 3.76 -26.73 -0.10 -1.04 16 5 C 0.10 0.93 2.13 -67.71 -0.14 0.79 16 6 H 0.08 0.75 7.69 -51.93 -0.40 0.35 16 7 N -0.66 -8.31 5.24 -107.99 -0.57 -8.87 16 8 C 0.04 0.55 6.01 -4.97 -0.03 0.52 16 9 C 0.50 9.40 7.88 -10.98 -0.09 9.32 16 10 O -0.54 -12.42 16.32 5.55 0.09 -12.33 16 11 N -0.71 -14.34 5.55 -61.47 -0.34 -14.68 16 12 C 0.22 5.51 4.50 -5.19 -0.02 5.48 16 13 C -0.54 -14.99 9.83 -34.44 -0.34 -15.33 16 14 H 0.08 2.26 7.84 -52.48 -0.41 1.85 16 15 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 16 N -0.89 -26.66 13.96 55.43 0.77 -25.88 16 17 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 21 C -0.14 -1.23 3.55 -89.81 -0.32 -1.55 16 22 C -0.14 -1.17 7.28 -25.83 -0.19 -1.35 16 23 C -0.14 -1.05 8.09 -25.82 -0.21 -1.26 16 24 C -0.13 -1.00 7.46 -25.91 -0.19 -1.19 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 1.02 7.75 -51.93 -0.40 0.61 16 32 H 0.06 0.48 6.37 -51.93 -0.33 0.15 16 33 H 0.07 0.63 6.44 -51.93 -0.33 0.29 16 34 H 0.35 4.64 8.31 -39.29 -0.33 4.31 16 35 H 0.10 1.15 7.92 -51.93 -0.41 0.74 16 36 H 0.05 0.62 7.71 -51.93 -0.40 0.22 16 37 H 0.40 6.99 8.32 -40.82 -0.34 6.65 16 38 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 39 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.09 0.81 7.71 -51.93 -0.40 0.41 16 42 H 0.09 0.73 5.55 -51.93 -0.29 0.44 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.59 6.42 -51.93 -0.33 0.26 16 LS Contribution 368.70 15.07 5.56 5.56 Total: -1.00 -31.24 368.70 -9.35 -40.59 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -8.54 Total: 5.73 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.66 Total: -7.10 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.13 Total: -49.43 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.24 -9.35 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754351618.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.779 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds