Wall clock time and date at job start Tue Mar 31 2020 05:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47433 * 2 1 4 4 C 1.52997 * 109.47292 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46973 * 179.97438 * 4 3 2 6 6 H 1.08999 * 110.43428 * 52.46525 * 5 4 3 7 7 C 1.54883 * 110.48960 * 289.77830 * 5 4 3 8 8 C 1.54892 * 102.74989 * 203.38226 * 7 5 4 9 9 C 1.54373 * 104.19703 * 37.96342 * 8 7 5 10 10 C 1.53869 * 106.54711 * 336.35678 * 9 8 7 11 11 H 1.09002 * 110.03130 * 119.34718 * 10 9 8 12 12 N 1.46905 * 110.03231 * 240.72711 * 10 9 8 13 13 C 1.46901 * 110.99870 * 272.90937 * 12 10 9 14 14 C 1.50697 * 109.46943 * 180.02562 * 13 12 10 15 15 O 1.21282 * 120.00396 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99767 * 180.02562 * 14 13 12 17 17 C 1.46504 * 119.99719 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.46785 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00107 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99714 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00121 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00018 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47248 * 90.00231 * 22 20 18 24 24 H 1.48501 * 109.47269 * 210.00197 * 22 20 18 25 25 H 1.48506 * 109.46892 * 330.00100 * 22 20 18 26 26 H 1.08998 * 109.46454 * 59.99958 * 1 2 3 27 27 H 1.08999 * 109.46996 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46642 * 300.00159 * 1 2 3 29 29 H 1.09003 * 109.47295 * 239.99817 * 2 1 3 30 30 H 1.09002 * 109.47158 * 120.00161 * 2 1 3 31 31 H 1.09003 * 109.47029 * 59.99654 * 3 2 1 32 32 H 1.09002 * 109.47080 * 300.00209 * 3 2 1 33 33 H 1.09003 * 109.47161 * 59.99986 * 4 3 2 34 34 H 1.09002 * 109.47433 * 300.00243 * 4 3 2 35 35 H 1.09001 * 110.75372 * 321.69245 * 7 5 4 36 36 H 1.08995 * 110.75771 * 85.06323 * 7 5 4 37 37 H 1.09002 * 110.48862 * 156.62005 * 8 7 5 38 38 H 1.09001 * 110.48199 * 279.26440 * 8 7 5 39 39 H 1.09000 * 110.04977 * 217.08991 * 9 8 7 40 40 H 1.08998 * 110.06595 * 95.63059 * 9 8 7 41 41 H 1.00901 * 110.99869 * 148.95649 * 12 10 9 42 42 H 1.09004 * 109.47031 * 299.99620 * 13 12 10 43 43 H 1.08995 * 109.47111 * 59.99900 * 13 12 10 44 44 H 0.96997 * 120.00713 * 359.97438 * 16 14 13 45 45 H 1.08999 * 109.47195 * 299.98994 * 17 16 14 46 46 H 1.08995 * 109.47470 * 59.99670 * 17 16 14 47 47 H 0.97000 * 119.99968 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6199 3.4516 0.8094 7 6 3.7985 3.5589 -1.3658 8 6 4.8560 4.6896 -1.4135 9 6 6.1117 4.0610 -0.7723 10 6 5.6173 2.9141 0.1266 11 1 6.0378 1.9670 -0.2113 12 7 6.0026 3.1662 1.5216 13 6 7.3492 2.6479 1.7976 14 6 7.7087 2.9237 3.2349 15 8 6.9210 3.4961 3.9580 16 7 8.9060 2.5351 3.7165 17 6 9.2557 2.8037 5.1136 18 6 10.6370 2.2718 5.3968 19 1 11.1980 1.7823 4.6145 20 6 11.1844 2.4102 6.6546 21 7 10.5010 3.0058 7.6074 22 14 12.8969 1.7516 7.0055 23 1 13.9011 2.8085 6.7236 24 1 12.9896 1.3486 8.4318 25 1 13.1612 0.5740 6.1402 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9338 0.9284 -0.8891 34 1 3.9331 0.9287 0.8908 35 1 3.9500 2.8537 -2.1830 36 1 2.7901 3.9717 -1.3923 37 1 5.0589 4.9791 -2.4446 38 1 4.5211 5.5497 -0.8336 39 1 6.6376 4.8046 -0.1735 40 1 6.7714 3.6703 -1.5470 41 1 5.3265 2.7745 2.1599 42 1 7.3684 1.5728 1.6186 43 1 8.0687 3.1384 1.1422 44 1 9.5362 2.0776 3.1382 45 1 9.2362 3.8787 5.2928 46 1 8.5363 2.3129 5.7691 47 1 10.8860 3.1028 8.4924 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755054206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:09 Heat of formation + Delta-G solvation = -79.909374 kcal Electronic energy + Delta-G solvation = -21965.210836 eV Core-core repulsion = 18759.911591 eV Total energy + Delta-G solvation = -3205.299246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.43890 -38.47842 -35.76575 -34.32498 -33.83399 -32.29204 -31.54464 -28.69330 -27.43137 -27.01870 -24.94537 -23.10835 -22.28477 -21.44653 -20.43213 -19.70546 -19.49701 -17.21382 -16.34200 -15.79802 -15.58556 -15.41714 -14.95862 -14.88903 -14.49618 -14.08130 -13.95979 -13.79008 -13.51398 -13.15772 -12.83018 -12.56703 -12.29452 -12.02085 -11.94695 -11.75512 -11.57325 -11.40634 -11.31884 -11.16073 -10.98122 -10.91402 -10.86764 -10.78405 -10.67043 -10.53684 -10.40871 -10.30771 -9.38486 -8.98967 -8.72174 -8.31364 -7.84068 -6.15601 -4.22506 3.24634 3.30562 3.32955 3.42661 3.85343 4.29168 4.33106 4.43742 4.53968 4.66176 4.75748 4.81458 4.89949 5.11128 5.20303 5.25382 5.28013 5.33025 5.39895 5.41725 5.47530 5.51635 5.53147 5.55143 5.64010 5.65531 5.71973 5.77104 5.82795 5.86804 5.88069 5.97431 6.01501 6.11599 6.13700 6.24026 6.28948 7.06386 7.34504 7.46210 7.49486 7.54267 7.69219 7.98710 8.66185 8.80514 9.14974 9.44282 10.94623 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021644 B = 0.002692 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.340168 B =10397.436877 C =11201.604445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.114 4.114 5 C -0.095 4.095 6 H 0.086 0.914 7 C -0.115 4.115 8 C -0.122 4.122 9 C -0.118 4.118 10 C 0.087 3.913 11 H 0.046 0.954 12 N -0.664 5.664 13 C 0.040 3.960 14 C 0.496 3.504 15 O -0.544 6.544 16 N -0.715 5.715 17 C 0.251 3.749 18 C -0.543 4.543 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.350 0.650 42 H 0.052 0.948 43 H 0.094 0.906 44 H 0.389 0.611 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.757 -3.650 -20.414 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.152 4.152 5 C -0.114 4.114 6 H 0.104 0.896 7 C -0.153 4.153 8 C -0.159 4.159 9 C -0.157 4.157 10 C -0.023 4.023 11 H 0.064 0.936 12 N -0.297 5.297 13 C -0.093 4.093 14 C 0.280 3.720 15 O -0.422 6.422 16 N -0.365 5.365 17 C 0.130 3.870 18 C -0.581 4.581 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.170 0.830 42 H 0.070 0.930 43 H 0.113 0.887 44 H 0.222 0.778 45 H 0.044 0.956 46 H 0.044 0.956 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.081 -2.548 -19.768 24.994 hybrid contribution 1.200 -1.528 0.081 1.945 sum -13.881 -4.076 -19.687 24.431 Atomic orbital electron populations 1.21776 0.96024 1.01462 1.01764 1.21549 0.95763 0.97154 1.01930 1.21616 0.95265 0.96553 1.02168 1.21681 0.95583 0.96037 1.01892 1.22215 0.94500 0.96054 0.98612 0.89583 1.22497 0.98835 0.97468 0.96496 1.22329 0.95369 0.98105 1.00139 1.22244 0.97494 0.98082 0.97845 1.22255 0.94396 0.96827 0.88844 0.93644 1.60317 1.02696 1.63428 1.03304 1.21887 0.93109 0.98496 0.95803 1.20383 0.82777 0.79945 0.88878 1.90661 1.49992 1.41911 1.59617 1.46451 1.16142 1.58427 1.15441 1.19081 0.95401 0.97026 0.75504 1.21233 1.00529 1.39445 0.96915 0.91930 1.24962 0.98238 0.95014 0.95868 1.69979 1.37516 1.41841 1.02951 0.86414 0.83694 0.79164 0.77623 1.20451 1.21006 1.19779 0.92876 0.92935 0.92713 0.92244 0.92044 0.91902 0.91949 0.92019 0.92121 0.91649 0.91675 0.92086 0.91465 0.90386 0.92362 0.83022 0.93040 0.88745 0.77831 0.95556 0.95645 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.13 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.12 -0.91 5.09 -26.73 -0.14 -1.04 16 4 C -0.11 -0.96 4.56 -26.73 -0.12 -1.08 16 5 C -0.10 -0.89 2.28 -88.96 -0.20 -1.09 16 6 H 0.09 0.92 7.97 -51.93 -0.41 0.50 16 7 C -0.12 -0.94 5.67 -24.74 -0.14 -1.08 16 8 C -0.12 -1.09 6.83 -25.01 -0.17 -1.26 16 9 C -0.12 -1.22 6.52 -25.56 -0.17 -1.39 16 10 C 0.09 0.93 2.82 -66.59 -0.19 0.75 16 11 H 0.05 0.48 7.52 -51.93 -0.39 0.09 16 12 N -0.66 -9.25 5.78 -106.81 -0.62 -9.87 16 13 C 0.04 0.58 5.99 -4.98 -0.03 0.55 16 14 C 0.50 10.01 7.87 -10.99 -0.09 9.92 16 15 O -0.54 -13.30 16.20 5.56 0.09 -13.21 16 16 N -0.72 -15.21 5.55 -61.47 -0.34 -15.55 16 17 C 0.25 6.74 5.43 -5.19 -0.03 6.71 16 18 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 19 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 22 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.45 7.55 -51.93 -0.39 0.06 16 33 H 0.06 0.49 8.02 -51.93 -0.42 0.08 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.49 7.96 -51.93 -0.41 0.08 16 36 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.95 7.92 -51.93 -0.41 0.54 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.35 5.11 8.03 -39.29 -0.32 4.79 16 42 H 0.05 0.65 8.07 -51.93 -0.42 0.23 16 43 H 0.09 1.24 8.12 -51.93 -0.42 0.81 16 44 H 0.39 7.05 8.32 -40.82 -0.34 6.71 16 45 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -31.49 376.47 -9.92 -41.41 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -8.96 Total: 5.48 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -1.48 Total: -4.28 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.22 Total: -51.01 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.49 -9.92 -41.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755054206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.500 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds