Wall clock time and date at job start Tue Mar 31 2020 05:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47369 * 2 1 4 4 C 1.52998 * 109.47369 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47369 * 180.02562 * 4 3 2 6 6 H 1.09006 * 110.05186 * 306.41425 * 5 4 3 7 7 C 1.54265 * 110.03395 * 67.82954 * 5 4 3 8 8 C 1.54885 * 104.19689 * 142.89878 * 7 5 4 9 9 C 1.54895 * 102.74688 * 322.05534 * 8 7 5 10 10 C 1.53876 * 110.03417 * 184.99826 * 5 4 3 11 11 H 1.09002 * 110.07161 * 121.40321 * 10 5 4 12 12 N 1.46902 * 110.02951 * 0.02562 * 10 5 4 13 13 C 1.46896 * 110.99937 * 156.38343 * 12 10 5 14 14 C 1.50700 * 109.46853 * 179.97438 * 13 12 10 15 15 O 1.21278 * 120.00429 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99743 * 179.97438 * 14 13 12 17 17 C 1.46507 * 120.00131 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47006 * 180.02562 * 17 16 14 19 19 H 1.07991 * 120.00449 * 359.72165 * 18 17 16 20 20 C 1.37885 * 119.99686 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.72095 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.72528 * 20 18 17 23 23 H 1.48493 * 109.47326 * 90.00142 * 22 20 18 24 24 H 1.48506 * 109.46545 * 209.99892 * 22 20 18 25 25 H 1.48498 * 109.47210 * 329.99603 * 22 20 18 26 26 H 1.09007 * 109.47046 * 60.00421 * 1 2 3 27 27 H 1.08994 * 109.47469 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47600 * 300.00454 * 1 2 3 29 29 H 1.08997 * 109.47247 * 239.99198 * 2 1 3 30 30 H 1.09002 * 109.46463 * 119.99984 * 2 1 3 31 31 H 1.09001 * 109.47130 * 59.99258 * 3 2 1 32 32 H 1.09007 * 109.46692 * 299.99795 * 3 2 1 33 33 H 1.08997 * 109.47247 * 59.99198 * 4 3 2 34 34 H 1.09002 * 109.46463 * 299.99984 * 4 3 2 35 35 H 1.09000 * 110.48970 * 24.21649 * 7 5 4 36 36 H 1.09007 * 110.48418 * 261.57479 * 7 5 4 37 37 H 1.08996 * 110.75716 * 203.74677 * 8 7 5 38 38 H 1.08995 * 110.91729 * 80.44032 * 8 7 5 39 39 H 1.08997 * 110.49099 * 279.26588 * 9 8 7 40 40 H 1.09003 * 110.60165 * 156.67704 * 9 8 7 41 41 H 1.00911 * 110.99603 * 280.33331 * 12 10 5 42 42 H 1.08993 * 109.47322 * 59.99607 * 13 12 10 43 43 H 1.09001 * 109.46785 * 299.99307 * 13 12 10 44 44 H 0.97004 * 120.00319 * 359.97438 * 16 14 13 45 45 H 1.08998 * 109.47049 * 59.99555 * 17 16 14 46 46 H 1.09001 * 109.46896 * 299.99826 * 17 16 14 47 47 H 0.97000 * 119.99651 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6312 3.4404 -0.8235 7 6 3.7412 3.5647 1.3427 8 6 4.9696 4.4616 1.6351 9 6 6.1529 3.5913 1.1436 10 6 5.6135 2.9019 -0.1266 11 1 5.9096 3.4651 -1.0116 12 7 6.1267 1.5280 -0.2106 13 6 7.4380 1.4953 -0.8718 14 6 7.9314 0.0730 -0.9389 15 8 7.2573 -0.8250 -0.4806 16 7 9.1219 -0.2012 -1.5083 17 6 9.6019 -1.5838 -1.5730 18 6 10.9471 -1.6173 -2.2515 19 1 11.3973 -0.7010 -2.6036 20 6 11.6008 -2.8185 -2.4273 21 7 11.0529 -3.9343 -1.9979 22 14 13.2648 -2.8609 -3.2751 23 1 14.3403 -2.7079 -2.2627 24 1 13.4286 -4.1582 -3.9791 25 1 13.3482 -1.7505 -4.2576 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9330 0.9286 -0.8908 34 1 3.9336 0.9285 0.8892 35 1 3.6181 2.8186 2.1277 36 1 2.8404 4.1710 1.2467 37 1 5.0556 4.6629 2.7028 38 1 4.9146 5.3927 1.0711 39 1 6.4194 2.8494 1.8964 40 1 7.0137 4.2151 0.9027 41 1 6.1718 1.1023 0.7032 42 1 8.1462 2.0988 -0.3043 43 1 7.3460 1.8963 -1.8812 44 1 9.6609 0.5170 -1.8752 45 1 8.8936 -2.1882 -2.1397 46 1 9.6946 -1.9839 -0.5633 47 1 11.5130 -4.7793 -2.1213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755054214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:17 Heat of formation + Delta-G solvation = -74.790312 kcal Electronic energy + Delta-G solvation = -22258.678495 eV Core-core repulsion = 19053.601228 eV Total energy + Delta-G solvation = -3205.077266 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.54286 -38.46379 -35.50939 -34.29843 -33.80125 -32.29204 -31.33531 -28.71360 -27.25982 -27.00855 -24.75093 -23.11972 -22.28322 -21.28379 -20.75956 -19.66136 -19.09789 -17.21789 -16.21220 -15.80686 -15.49417 -15.37052 -15.07045 -14.79535 -14.36570 -13.86622 -13.82572 -13.74066 -13.36543 -12.99554 -12.83931 -12.46681 -12.36129 -12.05210 -11.91383 -11.63954 -11.47296 -11.39981 -11.20840 -11.11449 -10.96850 -10.88567 -10.86653 -10.69714 -10.54357 -10.31099 -10.25554 -10.21282 -9.38697 -8.99326 -8.72260 -8.23129 -7.83800 -6.15850 -4.22696 3.24302 3.30397 3.32870 3.43047 3.86792 4.31127 4.41970 4.46966 4.58333 4.75758 4.92534 4.96703 5.11940 5.20107 5.24753 5.26933 5.35740 5.40833 5.44933 5.48036 5.51089 5.57217 5.60357 5.66055 5.71701 5.76948 5.80999 5.82302 5.90079 5.97349 6.07489 6.09924 6.17004 6.18648 6.28969 6.49729 6.69244 7.05474 7.34293 7.45669 7.48892 7.54129 7.69086 7.98613 8.66281 8.80441 9.15120 9.44129 10.94373 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019894 B = 0.002998 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.131853 B = 9337.712466 C =10501.428636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.096 4.096 5 C -0.081 4.081 6 H 0.069 0.931 7 C -0.120 4.120 8 C -0.122 4.122 9 C -0.156 4.156 10 C 0.086 3.914 11 H 0.078 0.922 12 N -0.660 5.660 13 C 0.038 3.962 14 C 0.496 3.504 15 O -0.544 6.544 16 N -0.716 5.716 17 C 0.251 3.749 18 C -0.543 4.543 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.351 0.649 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.389 0.611 45 H 0.026 0.974 46 H 0.025 0.975 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.274 16.987 5.231 23.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.134 4.134 5 C -0.100 4.100 6 H 0.088 0.912 7 C -0.158 4.158 8 C -0.160 4.160 9 C -0.195 4.195 10 C -0.025 4.025 11 H 0.097 0.903 12 N -0.292 5.292 13 C -0.094 4.094 14 C 0.280 3.720 15 O -0.422 6.422 16 N -0.365 5.365 17 C 0.130 3.870 18 C -0.581 4.581 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.172 0.828 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.221 0.779 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.054 15.924 4.979 23.154 hybrid contribution 1.864 0.634 0.050 1.970 sum -14.190 16.559 5.030 22.380 Atomic orbital electron populations 1.21781 0.96474 1.01306 1.01340 1.21531 0.95154 0.97333 1.02372 1.21684 0.96693 0.96286 1.01125 1.21423 0.93045 0.95207 1.03753 1.21788 0.93998 0.97178 0.97038 0.91213 1.22485 0.97401 0.98414 0.97505 1.22408 0.94989 0.98053 1.00582 1.23164 0.98240 0.99700 0.98432 1.22287 0.94866 0.88417 0.96880 0.90340 1.60361 1.24441 1.16830 1.27519 1.21875 0.91149 0.95414 1.00974 1.20392 0.81956 0.90335 0.79312 1.90659 1.56186 1.47676 1.47646 1.46454 1.19077 1.12400 1.58546 1.19073 0.94034 0.76405 0.97456 1.21233 1.03355 0.93786 1.39764 0.91947 1.24960 0.98308 0.95296 0.95495 1.69979 1.38522 0.98281 1.45495 0.86418 0.83392 0.77600 0.79514 1.20487 1.20991 1.19762 0.93030 0.93020 0.93119 0.91848 0.92086 0.92706 0.92689 0.90121 0.92172 0.91494 0.91996 0.91915 0.91659 0.91438 0.91826 0.82846 0.93057 0.88781 0.77853 0.95581 0.95664 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.13 -1.28 5.93 -26.73 -0.16 -1.43 16 3 C -0.12 -1.16 5.07 -26.73 -0.14 -1.29 16 4 C -0.10 -1.06 3.57 -26.73 -0.10 -1.16 16 5 C -0.08 -0.78 2.93 -89.50 -0.26 -1.04 16 6 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 7 C -0.12 -1.01 5.53 -25.08 -0.14 -1.15 16 8 C -0.12 -0.98 6.91 -24.74 -0.17 -1.15 16 9 C -0.16 -1.44 6.40 -25.07 -0.16 -1.60 16 10 C 0.09 0.89 3.20 -66.59 -0.21 0.67 16 11 H 0.08 0.78 7.83 -51.93 -0.41 0.38 16 12 N -0.66 -8.71 3.98 -106.81 -0.43 -9.14 16 13 C 0.04 0.54 5.99 -4.98 -0.03 0.51 16 14 C 0.50 9.81 7.87 -10.98 -0.09 9.72 16 15 O -0.54 -13.04 16.20 5.56 0.09 -12.95 16 16 N -0.72 -15.04 5.55 -61.47 -0.34 -15.38 16 17 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 18 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 19 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 22 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.49 7.51 -51.93 -0.39 0.10 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 1.09 7.58 -51.93 -0.39 0.70 16 34 H 0.06 0.73 7.60 -51.93 -0.39 0.33 16 35 H 0.07 0.59 7.76 -51.93 -0.40 0.19 16 36 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.67 7.58 -51.93 -0.39 0.28 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.35 4.97 7.47 -39.29 -0.29 4.67 16 42 H 0.05 0.63 8.10 -51.93 -0.42 0.21 16 43 H 0.09 1.18 8.07 -51.93 -0.42 0.76 16 44 H 0.39 6.97 8.32 -40.82 -0.34 6.63 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 372.92 15.07 5.62 5.62 Total: -1.00 -30.96 372.92 -9.75 -40.71 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -8.88 Total: 6.41 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -1.53 Total: -5.66 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.03 Total: -50.03 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.96 -9.75 -40.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755054214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.082 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds