Wall clock time and date at job start Tue Mar 31 2020 05:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47269 * 2 1 4 4 C 1.52998 * 109.47269 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47291 * 180.02562 * 4 3 2 6 6 H 1.08999 * 110.53365 * 307.60487 * 5 4 3 7 7 C 1.54887 * 110.48808 * 70.22225 * 5 4 3 8 8 C 1.54891 * 102.74682 * 156.62109 * 7 5 4 9 9 C 1.54265 * 104.19643 * 322.05952 * 8 7 5 10 10 C 1.53876 * 106.60091 * 23.60997 * 9 8 7 11 11 H 1.09007 * 110.03181 * 240.66784 * 10 9 8 12 12 N 1.46896 * 110.03412 * 119.28767 * 10 9 8 13 13 C 1.46899 * 111.00338 * 86.45093 * 12 10 9 14 14 C 1.50698 * 109.46987 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00472 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99538 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99665 * 179.72653 * 16 14 13 18 18 C 1.50703 * 109.47138 * 180.28062 * 17 16 14 19 19 H 1.08001 * 120.00037 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99824 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00502 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99575 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47135 * 90.00187 * 22 20 18 24 24 H 1.48500 * 109.46751 * 210.00163 * 22 20 18 25 25 H 1.48503 * 109.47215 * 329.99996 * 22 20 18 26 26 H 1.09000 * 109.47452 * 300.00317 * 1 2 3 27 27 H 1.09003 * 109.47299 * 59.99920 * 1 2 3 28 28 H 1.08997 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47241 * 239.99503 * 2 1 3 30 30 H 1.09006 * 109.46862 * 119.99844 * 2 1 3 31 31 H 1.09006 * 109.47452 * 60.00134 * 3 2 1 32 32 H 1.09006 * 109.47051 * 299.99728 * 3 2 1 33 33 H 1.09000 * 109.47452 * 59.99683 * 4 3 2 34 34 H 1.09003 * 109.47299 * 300.00080 * 4 3 2 35 35 H 1.09005 * 110.75393 * 38.30683 * 7 5 4 36 36 H 1.08998 * 110.91495 * 275.01096 * 7 5 4 37 37 H 1.09002 * 110.48340 * 203.38088 * 8 7 5 38 38 H 1.09000 * 110.48504 * 80.73881 * 8 7 5 39 39 H 1.09008 * 110.03189 * 264.32493 * 9 8 7 40 40 H 1.09003 * 110.03450 * 142.89639 * 9 8 7 41 41 H 1.00900 * 110.99693 * 322.49620 * 12 10 9 42 42 H 1.09003 * 109.46477 * 60.00383 * 13 12 10 43 43 H 1.08993 * 109.47002 * 300.00709 * 13 12 10 44 44 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 45 45 H 1.09009 * 109.47454 * 300.27637 * 17 16 14 46 46 H 1.08998 * 109.47492 * 60.27932 * 17 16 14 47 47 H 0.96997 * 120.00009 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6206 3.4533 -0.8074 7 6 3.7973 3.5593 1.3667 8 6 4.8548 4.6901 1.4148 9 6 6.1099 4.0618 0.7747 10 6 5.6173 2.9141 -0.1241 11 1 6.0384 1.9674 0.2148 12 7 6.0039 3.1657 -1.5187 13 6 7.3571 2.6618 -1.7891 14 6 7.7175 2.9368 -3.2263 15 8 6.9255 3.4976 -3.9537 16 7 8.9206 2.5602 -3.7031 17 6 9.2688 2.8221 -5.1018 18 6 10.6550 2.3008 -5.3805 19 1 11.2203 1.8226 -4.5943 20 6 11.2020 2.4352 -6.6390 21 7 10.5142 3.0188 -7.5961 22 14 12.9206 1.7896 -6.9842 23 1 12.8369 0.3796 -7.4424 24 1 13.5569 2.6166 -8.0409 25 1 13.7341 1.8597 -5.7438 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8901 33 1 3.9338 0.9284 -0.8891 34 1 3.9330 0.9287 0.8909 35 1 3.9481 2.8543 2.1843 36 1 2.7889 3.9720 1.3955 37 1 5.0568 4.9798 2.4461 38 1 4.5204 5.5500 0.8345 39 1 6.7693 3.6721 1.5503 40 1 6.6358 4.8056 0.1760 41 1 5.9320 4.1469 -1.7425 42 1 7.3880 1.5877 -1.6062 43 1 8.0690 3.1627 -1.1333 44 1 9.5543 2.1120 -3.1214 45 1 8.5540 2.3204 -5.7543 46 1 9.2399 3.8956 -5.2886 47 1 10.8989 3.1130 -8.4815 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755054215.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:22 Heat of formation + Delta-G solvation = -80.063229 kcal Electronic energy + Delta-G solvation = -21958.281330 eV Core-core repulsion = 18752.975413 eV Total energy + Delta-G solvation = -3205.305917 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.46216 -38.47222 -35.76361 -34.29990 -33.81311 -32.29323 -31.46490 -28.71153 -27.36770 -27.02219 -24.91548 -23.02756 -22.24817 -21.37605 -20.36718 -20.10472 -19.48602 -17.15671 -16.08421 -15.90853 -15.65315 -15.14952 -15.10633 -14.84317 -14.45435 -14.05003 -13.90282 -13.71062 -13.50252 -13.08443 -12.86284 -12.53695 -12.28228 -12.12887 -11.92572 -11.78404 -11.62402 -11.37846 -11.25656 -11.23789 -10.97036 -10.87318 -10.84152 -10.76711 -10.64626 -10.50671 -10.40795 -10.30961 -9.38587 -8.99233 -8.72295 -8.25971 -7.84073 -6.15691 -4.22609 3.24542 3.30469 3.32859 3.42553 3.84855 4.30666 4.35307 4.44707 4.55276 4.75996 4.78375 4.85708 4.96494 5.13436 5.20221 5.27520 5.31394 5.34377 5.36764 5.45451 5.48304 5.52839 5.56534 5.60359 5.64357 5.70001 5.70030 5.73038 5.83753 5.88149 5.97679 5.98255 6.01936 6.07807 6.17365 6.29692 6.37533 7.05820 7.34302 7.45916 7.49083 7.54109 7.69074 7.98620 8.66066 8.80402 9.14884 9.44197 10.94535 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021643 B = 0.002690 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.410426 B =10407.797069 C =11211.320215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.108 4.108 5 C -0.079 4.079 6 H 0.083 0.917 7 C -0.120 4.120 8 C -0.123 4.123 9 C -0.157 4.157 10 C 0.087 3.913 11 H 0.079 0.921 12 N -0.664 5.664 13 C 0.040 3.960 14 C 0.496 3.504 15 O -0.544 6.544 16 N -0.715 5.715 17 C 0.251 3.749 18 C -0.543 4.543 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.351 0.649 42 H 0.094 0.906 43 H 0.052 0.948 44 H 0.389 0.611 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.969 -2.188 20.828 25.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.146 4.146 5 C -0.098 4.098 6 H 0.102 0.898 7 C -0.158 4.158 8 C -0.160 4.160 9 C -0.196 4.196 10 C -0.023 4.023 11 H 0.097 0.903 12 N -0.296 5.296 13 C -0.093 4.093 14 C 0.280 3.720 15 O -0.422 6.422 16 N -0.365 5.365 17 C 0.130 3.870 18 C -0.581 4.581 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.171 0.829 42 H 0.112 0.888 43 H 0.070 0.930 44 H 0.222 0.778 45 H 0.044 0.956 46 H 0.044 0.956 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.814 -2.282 19.805 24.838 hybrid contribution 1.914 0.108 0.445 1.968 sum -12.900 -2.174 20.250 24.108 Atomic orbital electron populations 1.21778 0.96173 1.01371 1.01686 1.21544 0.95602 0.97299 1.01927 1.21618 0.95685 0.96390 1.01896 1.21586 0.95026 0.95982 1.01990 1.21983 0.94271 0.96348 0.97161 0.89846 1.22580 0.98589 0.97314 0.97320 1.22298 0.95288 0.98156 1.00291 1.22961 0.98103 0.98605 0.99970 1.22330 0.95532 0.97663 0.86795 0.90266 1.60224 1.24275 1.24557 1.20532 1.21862 0.90724 1.01837 0.94849 1.20392 0.82508 0.79987 0.89117 1.90662 1.49571 1.42593 1.59371 1.46451 1.15513 1.59174 1.15323 1.19081 0.95446 0.96977 0.75510 1.21233 1.00128 1.40034 0.96732 0.91932 1.24961 0.98270 0.94974 0.95870 1.69976 1.37540 1.42040 1.02726 0.86416 0.83538 0.78825 0.78126 1.20445 1.21010 1.19779 0.92975 0.92739 0.93007 0.91964 0.92324 0.92280 0.91964 0.91331 0.92490 0.91634 0.91649 0.92018 0.91640 0.91781 0.91727 0.82897 0.88764 0.93008 0.77833 0.95563 0.95645 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.74 16 2 C -0.13 -1.01 5.93 -26.73 -0.16 -1.17 16 3 C -0.12 -0.99 5.09 -26.73 -0.14 -1.13 16 4 C -0.11 -1.00 4.56 -26.73 -0.12 -1.12 16 5 C -0.08 -0.76 2.56 -88.96 -0.23 -0.99 16 6 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 7 C -0.12 -0.97 5.67 -24.74 -0.14 -1.11 16 8 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 9 C -0.16 -1.47 6.37 -25.61 -0.16 -1.63 16 10 C 0.09 0.92 2.80 -66.59 -0.19 0.73 16 11 H 0.08 0.81 7.53 -51.93 -0.39 0.42 16 12 N -0.66 -9.11 5.82 -106.81 -0.62 -9.73 16 13 C 0.04 0.57 5.99 -4.98 -0.03 0.54 16 14 C 0.50 9.95 7.87 -10.99 -0.09 9.86 16 15 O -0.54 -13.27 16.20 5.55 0.09 -13.18 16 16 N -0.72 -15.16 5.55 -61.47 -0.34 -15.50 16 17 C 0.25 6.73 5.43 -5.19 -0.03 6.70 16 18 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 19 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 22 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.46 7.55 -51.93 -0.39 0.07 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.48 8.02 -51.93 -0.42 0.07 16 35 H 0.06 0.50 7.97 -51.93 -0.41 0.08 16 36 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 40 H 0.06 0.66 7.59 -51.93 -0.39 0.26 16 41 H 0.35 5.10 7.89 -39.29 -0.31 4.79 16 42 H 0.09 1.21 8.07 -51.93 -0.42 0.79 16 43 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 44 H 0.39 7.02 8.32 -40.82 -0.34 6.68 16 45 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -31.41 376.22 -9.93 -41.33 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -8.94 Total: 5.78 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -1.50 Total: -4.74 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.23 Total: -50.80 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.41 -9.93 -41.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755054215.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.730 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds