Wall clock time and date at job start Tue Mar 31 2020 05:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47256 * 2 1 4 4 C 1.53000 * 109.47173 * 120.00161 * 2 1 3 5 5 C 1.52993 * 109.47383 * 173.87120 * 4 2 1 6 6 H 1.08999 * 109.45851 * 186.52135 * 5 4 2 7 7 C 1.53043 * 109.46261 * 306.49207 * 5 4 2 8 8 C 1.53122 * 109.27652 * 179.19362 * 7 5 4 9 9 C 1.53116 * 109.16311 * 302.34684 * 8 7 5 10 10 C 1.53041 * 109.28020 * 57.65530 * 9 8 7 11 11 N 1.46843 * 109.46411 * 66.54457 * 5 4 2 12 12 C 1.46898 * 110.99856 * 54.14453 * 11 5 4 13 13 C 1.50699 * 109.47326 * 192.76405 * 12 11 5 14 14 O 1.21279 * 120.00301 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99833 * 179.97438 * 13 12 11 16 16 C 1.46501 * 119.99880 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.47406 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99522 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00075 * 180.02562 * 17 16 15 20 20 N 1.31509 * 119.99973 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99747 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47009 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46961 * 119.99827 * 21 19 17 24 24 H 1.48501 * 109.46959 * 239.99725 * 21 19 17 25 25 H 1.08995 * 109.47115 * 300.00384 * 1 2 3 26 26 H 1.09004 * 109.46646 * 59.99565 * 1 2 3 27 27 H 1.08990 * 109.47263 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47222 * 240.00324 * 2 1 3 29 29 H 1.09002 * 109.47256 * 67.68501 * 3 2 1 30 30 H 1.09002 * 109.47408 * 187.67982 * 3 2 1 31 31 H 1.08993 * 109.47662 * 307.68227 * 3 2 1 32 32 H 1.09004 * 109.47092 * 53.87016 * 4 2 1 33 33 H 1.09001 * 109.47127 * 293.87240 * 4 2 1 34 34 H 1.09005 * 109.50104 * 59.25817 * 7 5 4 35 35 H 1.08996 * 109.50418 * 299.13330 * 7 5 4 36 36 H 1.09003 * 109.51746 * 182.44253 * 8 7 5 37 37 H 1.08997 * 109.57690 * 62.28738 * 8 7 5 38 38 H 1.09006 * 109.50542 * 297.71652 * 9 8 7 39 39 H 1.08999 * 109.51010 * 177.59939 * 9 8 7 40 40 H 1.08994 * 109.46202 * 180.80634 * 10 9 8 41 41 H 1.08993 * 109.45174 * 60.82999 * 10 9 8 42 42 H 1.09005 * 109.47238 * 72.76340 * 12 11 5 43 43 H 1.09001 * 109.47393 * 312.76989 * 12 11 5 44 44 H 0.96992 * 120.00387 * 359.97438 * 15 13 12 45 45 H 1.09005 * 109.46997 * 299.99596 * 16 15 13 46 46 H 1.08993 * 109.47728 * 59.99684 * 16 15 13 47 47 H 0.96998 * 119.99802 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5622 -0.8560 1.1746 6 1 3.9135 -1.4694 2.0044 7 6 3.9512 -1.5181 -0.1492 8 6 5.4761 -1.6326 -0.2282 9 6 6.0926 -0.2376 -0.0920 10 6 5.6415 0.3873 1.2301 11 7 4.1759 0.4755 1.2564 12 6 3.7132 1.1960 2.4499 13 6 4.1042 2.6475 2.3436 14 8 4.7084 3.0430 1.3693 15 7 3.7816 3.5064 3.3309 16 6 4.1612 4.9175 3.2273 17 6 3.6867 5.6567 4.4518 18 1 3.1550 5.1282 5.2293 19 6 3.9303 7.0078 4.5791 20 7 4.5772 7.6514 3.6321 21 14 3.3414 7.9241 6.0967 22 1 2.6443 6.9793 7.0060 23 1 4.5068 8.5190 6.7990 24 1 2.4044 9.0025 5.6913 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.7933 1.9151 0.9507 30 1 3.1214 1.4455 -0.1373 31 1 1.5690 1.9945 -0.8132 32 1 1.5898 -1.7124 1.3058 33 1 1.7690 -0.1481 2.1358 34 1 3.5883 -0.9123 -0.9795 35 1 3.5084 -2.5126 -0.2026 36 1 5.7597 -2.0641 -1.1882 37 1 5.8368 -2.2706 0.5786 38 1 5.7633 0.3883 -0.9214 39 1 7.1796 -0.3172 -0.1047 40 1 6.0672 1.3863 1.3235 41 1 5.9829 -0.2320 2.0595 42 1 4.1715 0.7604 3.3378 43 1 2.6287 1.1164 2.5248 44 1 3.2974 3.1904 4.1097 45 1 5.2458 4.9975 3.1527 46 1 3.7030 5.3529 2.3394 47 1 4.7489 8.6018 3.7219 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757860582.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:35 Heat of formation + Delta-G solvation = -47.933478 kcal Electronic energy + Delta-G solvation = -23777.830279 eV Core-core repulsion = 20573.917613 eV Total energy + Delta-G solvation = -3203.912667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17103 -38.18443 -35.71263 -34.15886 -33.36371 -32.27246 -31.15865 -28.38539 -26.96982 -26.65800 -26.00867 -23.44415 -22.36228 -21.63848 -20.38558 -19.58353 -18.81605 -17.11089 -16.26005 -15.62244 -15.47549 -15.07166 -14.73843 -14.57650 -14.23270 -14.18370 -13.66189 -13.49574 -13.27915 -12.90375 -12.63735 -12.36474 -12.28853 -11.96838 -11.91873 -11.75786 -11.64608 -11.37889 -11.19851 -10.93568 -10.90541 -10.86708 -10.67471 -10.50678 -10.31977 -10.26197 -10.17218 -9.89057 -9.35489 -8.89443 -8.70988 -7.93868 -7.79472 -6.15164 -4.21691 3.24077 3.31173 3.34124 3.46563 3.71401 4.28441 4.46935 4.63053 4.76510 4.87881 4.99056 5.12099 5.18549 5.21050 5.26371 5.38092 5.42376 5.48053 5.58384 5.60061 5.63913 5.67857 5.73878 5.84496 5.87394 5.90434 5.94074 5.99844 6.03162 6.15484 6.21708 6.24256 6.32625 6.43530 6.46084 6.64105 7.08319 7.15614 7.28275 7.37207 7.50809 7.55770 7.71021 7.99812 8.68943 8.82696 9.19073 9.45458 10.95087 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022323 B = 0.003976 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.991874 B = 7040.410451 C = 7749.680994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.157 4.157 4 C -0.115 4.115 5 C 0.085 3.915 6 H 0.037 0.963 7 C -0.112 4.112 8 C -0.121 4.121 9 C -0.113 4.113 10 C 0.050 3.950 11 N -0.501 5.501 12 C 0.024 3.976 13 C 0.501 3.499 14 O -0.536 6.536 15 N -0.717 5.717 16 C 0.252 3.748 17 C -0.542 4.542 18 H 0.063 0.937 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.902 3.098 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.107 0.893 31 H 0.033 0.967 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.095 0.905 41 H 0.022 0.978 42 H 0.053 0.947 43 H 0.106 0.894 44 H 0.388 0.612 45 H 0.025 0.975 46 H 0.026 0.974 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.454 -20.031 -5.187 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.214 4.214 4 C -0.153 4.153 5 C -0.023 4.023 6 H 0.055 0.945 7 C -0.150 4.150 8 C -0.159 4.159 9 C -0.151 4.151 10 C -0.077 4.077 11 N -0.226 5.226 12 C -0.107 4.107 13 C 0.284 3.716 14 O -0.414 6.414 15 N -0.367 5.367 16 C 0.132 3.868 17 C -0.580 4.580 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.125 0.875 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.124 0.876 44 H 0.220 0.780 45 H 0.043 0.957 46 H 0.044 0.956 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.082 -19.267 -6.350 20.520 hybrid contribution -0.366 0.014 2.027 2.060 sum -3.448 -19.253 -4.323 20.032 Atomic orbital electron populations 1.21898 0.96345 1.00754 1.01651 1.21094 0.94271 0.97849 0.97503 1.22254 1.05451 0.93506 1.00211 1.21856 0.94071 1.00300 0.99063 1.21648 0.94347 0.89196 0.97129 0.94544 1.21696 0.95659 0.99788 0.97829 1.21603 0.95737 0.97341 1.01214 1.21536 0.99363 0.95776 0.98422 1.22247 0.87312 1.02033 0.96105 1.61796 1.07140 1.16071 1.37590 1.22235 1.02561 0.93573 0.92310 1.20271 0.80469 0.87254 0.83557 1.90631 1.40887 1.78723 1.31169 1.46453 1.57442 1.11751 1.21015 1.19054 0.96108 0.74300 0.97378 1.21277 1.38078 0.94071 1.04606 0.91935 1.24946 0.94892 0.97395 0.96766 1.69983 1.39802 1.09647 1.32852 0.86385 0.78508 0.79731 0.82425 1.19659 1.20822 1.20802 0.92976 0.92980 0.93468 0.91280 0.93827 0.87491 0.94764 0.91889 0.91500 0.90309 0.91962 0.92142 0.92702 0.90848 0.91953 0.88687 0.95937 0.92897 0.87604 0.77997 0.95733 0.95586 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.19 37.16 0.34 -1.17 16 2 C -0.09 -0.98 2.58 -90.62 -0.23 -1.22 16 3 C -0.16 -2.24 7.59 37.16 0.28 -1.96 16 4 C -0.12 -1.17 4.48 -26.73 -0.12 -1.29 16 5 C 0.09 0.93 2.12 -67.72 -0.14 0.78 16 6 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 7 C -0.11 -1.10 4.87 -26.65 -0.13 -1.23 16 8 C -0.12 -1.18 6.00 -26.61 -0.16 -1.34 16 9 C -0.11 -1.33 6.09 -26.65 -0.16 -1.49 16 10 C 0.05 0.70 5.11 -3.83 -0.02 0.68 16 11 N -0.50 -6.77 1.32 -228.13 -0.30 -7.07 16 12 C 0.02 0.35 4.06 -4.98 -0.02 0.33 16 13 C 0.50 9.74 7.15 -10.99 -0.08 9.66 16 14 O -0.54 -12.41 14.52 5.56 0.08 -12.33 16 15 N -0.72 -14.98 5.55 -61.47 -0.34 -15.32 16 16 C 0.25 6.68 5.43 -5.19 -0.03 6.65 16 17 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 18 H 0.06 1.59 7.60 -52.49 -0.40 1.20 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 21 Si 0.90 20.90 29.54 -169.99 -5.02 15.87 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.74 5.95 -51.93 -0.31 0.43 16 29 H 0.04 0.67 6.28 -51.93 -0.33 0.34 16 30 H 0.11 1.74 5.67 -51.93 -0.29 1.45 16 31 H 0.03 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.70 5.68 -51.93 -0.30 0.41 16 34 H 0.08 0.84 6.15 -51.93 -0.32 0.52 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.63 6.04 -51.93 -0.31 1.31 16 41 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.11 1.37 4.19 -51.93 -0.22 1.16 16 44 H 0.39 6.99 8.32 -40.82 -0.34 6.65 16 45 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -30.41 351.21 -8.73 -39.14 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -8.29 Total: 4.81 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.89 Total: -4.96 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.09 Total: -47.82 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.08 Total: -12.33 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.41 -8.73 -39.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757860582.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.797 kcal (2) G-P(sol) polarization free energy of solvation -30.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds