Wall clock time and date at job start Tue Mar 31 2020 05:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46920 * 2 1 4 4 C 1.52992 * 109.46951 * 120.00436 * 2 1 3 5 5 C 1.52996 * 109.47605 * 66.38649 * 4 2 1 6 6 H 1.08992 * 109.46618 * 173.63024 * 5 4 2 7 7 C 1.53044 * 109.45020 * 53.66063 * 5 4 2 8 8 C 1.53120 * 109.27761 * 180.81208 * 7 5 4 9 9 C 1.53114 * 109.16019 * 57.65656 * 8 7 5 10 10 C 1.53038 * 109.27660 * 302.34332 * 9 8 7 11 11 N 1.46842 * 109.46412 * 293.61921 * 5 4 2 12 12 C 1.46907 * 110.99483 * 305.84221 * 11 5 4 13 13 C 1.50706 * 109.46946 * 165.41879 * 12 11 5 14 14 O 1.21283 * 120.00063 * 359.97438 * 13 12 11 15 15 N 1.34772 * 119.99881 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00100 * 179.72594 * 15 13 12 17 17 C 1.50698 * 109.47518 * 180.27284 * 16 15 13 18 18 H 1.08006 * 119.99580 * 359.97438 * 17 16 15 19 19 C 1.37869 * 120.00181 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00198 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99870 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47131 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47433 * 120.00223 * 21 19 17 24 24 H 1.48506 * 109.46895 * 239.99738 * 21 19 17 25 25 H 1.09001 * 109.46988 * 171.68881 * 1 2 3 26 26 H 1.08997 * 109.47137 * 291.69022 * 1 2 3 27 27 H 1.09002 * 109.47147 * 51.68616 * 1 2 3 28 28 H 1.09000 * 109.47011 * 240.00635 * 2 1 3 29 29 H 1.08999 * 109.46702 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47462 * 300.00474 * 3 2 1 31 31 H 1.09006 * 109.46620 * 60.00060 * 3 2 1 32 32 H 1.09002 * 109.47091 * 306.38192 * 4 2 1 33 33 H 1.09001 * 109.47051 * 186.38733 * 4 2 1 34 34 H 1.08995 * 109.50453 * 300.75754 * 7 5 4 35 35 H 1.09002 * 109.50206 * 60.83385 * 7 5 4 36 36 H 1.08997 * 109.52448 * 177.56304 * 8 7 5 37 37 H 1.09008 * 109.52378 * 297.68457 * 8 7 5 38 38 H 1.08994 * 109.50390 * 62.28663 * 9 8 7 39 39 H 1.09003 * 109.50397 * 182.36887 * 9 8 7 40 40 H 1.08999 * 109.46717 * 299.16055 * 10 9 8 41 41 H 1.09003 * 109.46001 * 179.19765 * 10 9 8 42 42 H 1.08994 * 109.47495 * 45.41399 * 12 11 5 43 43 H 1.08999 * 109.46662 * 285.41129 * 12 11 5 44 44 H 0.97002 * 119.99900 * 359.97438 * 15 13 12 45 45 H 1.09003 * 109.46705 * 300.27451 * 16 15 13 46 46 H 1.09002 * 109.47246 * 60.26967 * 16 15 13 47 47 H 0.97005 * 120.00316 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6653 -2.2026 1.1715 6 1 2.1243 -2.7375 2.0028 7 6 2.1683 -2.7869 -0.1506 8 6 1.7736 -4.2641 -0.2331 9 6 0.2527 -4.3858 -0.1045 10 6 -0.1948 -3.7552 1.2161 11 7 0.2054 -2.3426 1.2459 12 6 -0.3278 -1.6693 2.4377 13 6 -1.8214 -1.5193 2.3038 14 8 -2.3860 -1.9323 1.3130 15 7 -2.5296 -0.9255 3.2847 16 6 -3.9807 -0.7743 3.1520 17 6 -4.5270 -0.0782 4.3718 18 1 -3.8600 0.2213 5.1667 19 6 -5.8782 0.1763 4.4731 20 7 -6.6904 -0.1879 3.5050 21 14 -6.5552 1.0399 5.9849 22 1 -5.4433 1.3433 6.9211 23 1 -7.2188 2.3042 5.5772 24 1 -7.5421 0.1578 6.6584 25 1 -0.3633 -1.0169 -0.1486 26 1 -0.3633 0.3798 0.9549 27 1 -0.3633 0.6371 -0.8063 28 1 1.8934 -0.5137 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.5864 -0.2777 2.1355 33 1 3.1240 -0.6234 1.3082 34 1 1.7204 -2.2435 -0.9825 35 1 3.2535 -2.6964 -0.1990 36 1 2.0919 -4.6732 -1.1919 37 1 2.2538 -4.8152 0.5755 38 1 -0.2254 -3.8675 -0.9357 39 1 -0.0308 -5.4382 -0.1204 40 1 0.2729 -4.2827 2.0474 41 1 -1.2788 -3.8275 1.3042 42 1 0.1291 -0.6844 2.5336 43 1 -0.1002 -2.2632 3.3228 44 1 -2.0780 -0.5949 4.0770 45 1 -4.2046 -0.1820 2.2648 46 1 -4.4414 -1.7577 3.0580 47 1 -7.6411 -0.0092 3.5764 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757860584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:39 Heat of formation + Delta-G solvation = -47.961675 kcal Electronic energy + Delta-G solvation = -23788.911092 eV Core-core repulsion = 20584.997202 eV Total energy + Delta-G solvation = -3203.913889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.16733 -38.17340 -35.71184 -34.15148 -33.36655 -32.26710 -31.16306 -28.38290 -26.96248 -26.65386 -26.00872 -23.44347 -22.36234 -21.63837 -20.38946 -19.57302 -18.81291 -17.10769 -16.26025 -15.62438 -15.48457 -15.06519 -14.73600 -14.55985 -14.23550 -14.17310 -13.65818 -13.50417 -13.27271 -12.90419 -12.62975 -12.37548 -12.27279 -11.96212 -11.91392 -11.76200 -11.65005 -11.35972 -11.20046 -10.93494 -10.90314 -10.86387 -10.66993 -10.50076 -10.31169 -10.26901 -10.17130 -9.88500 -9.35241 -8.90170 -8.70763 -7.93608 -7.79219 -6.14916 -4.21485 3.24183 3.31295 3.34236 3.47540 3.71232 4.28708 4.47464 4.63034 4.76503 4.87484 4.98919 5.12328 5.18599 5.21258 5.26054 5.37798 5.42442 5.47877 5.58388 5.59577 5.63778 5.68254 5.74218 5.84676 5.87548 5.90633 5.93528 5.99434 6.03733 6.16147 6.21958 6.24868 6.30876 6.43240 6.46954 6.65236 7.08699 7.16312 7.28075 7.37493 7.51378 7.56122 7.71376 8.00088 8.69479 8.83109 9.19865 9.45748 10.95308 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.003987 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.656653 B = 7021.834847 C = 7723.640458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.089 4.089 3 C -0.149 4.149 4 C -0.115 4.115 5 C 0.085 3.915 6 H 0.037 0.963 7 C -0.112 4.112 8 C -0.121 4.121 9 C -0.113 4.113 10 C 0.052 3.948 11 N -0.501 5.501 12 C 0.024 3.976 13 C 0.501 3.499 14 O -0.536 6.536 15 N -0.718 5.718 16 C 0.253 3.747 17 C -0.542 4.542 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.902 3.098 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.107 0.893 26 H 0.043 0.957 27 H 0.033 0.967 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.023 0.977 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.053 0.947 44 H 0.388 0.612 45 H 0.026 0.974 46 H 0.025 0.975 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.045 -3.800 -4.874 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.107 4.107 3 C -0.206 4.206 4 C -0.153 4.153 5 C -0.023 4.023 6 H 0.055 0.945 7 C -0.150 4.150 8 C -0.159 4.159 9 C -0.151 4.151 10 C -0.075 4.075 11 N -0.226 5.226 12 C -0.107 4.107 13 C 0.284 3.716 14 O -0.414 6.414 15 N -0.367 5.367 16 C 0.132 3.868 17 C -0.580 4.580 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.729 3.271 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.125 0.875 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.041 0.959 41 H 0.111 0.889 42 H 0.124 0.876 43 H 0.071 0.929 44 H 0.220 0.780 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.209 -3.874 -6.056 20.510 hybrid contribution 0.091 0.345 2.032 2.063 sum 19.301 -3.529 -4.024 20.029 Atomic orbital electron populations 1.22249 0.93460 1.05379 1.00249 1.21097 0.97505 0.94633 0.97489 1.21901 1.00010 0.97081 1.01657 1.21859 1.00107 0.94260 0.99067 1.21646 0.87691 0.95848 0.97125 0.94544 1.21697 0.99733 0.95699 0.97858 1.21601 0.96566 0.96487 1.01225 1.21534 0.95190 0.99956 0.98429 1.22216 1.02357 0.86821 0.96142 1.61787 1.09363 1.13654 1.37786 1.22242 0.94822 1.01352 0.92296 1.20271 0.88382 0.79140 0.83757 1.90636 1.71663 1.49055 1.29999 1.46454 1.11141 1.58817 1.20295 1.19051 0.73347 0.97095 0.97336 1.21275 0.93138 1.39559 1.04039 0.91940 1.24943 0.96752 0.95598 0.96705 1.69986 1.04143 1.46072 1.32093 0.86386 0.79017 0.79252 0.82401 1.19663 1.20802 1.20830 0.87508 0.93836 0.94778 0.91281 0.93476 0.92970 0.92985 0.91493 0.91884 0.90308 0.91959 0.92133 0.92699 0.90828 0.91947 0.95893 0.88935 0.87617 0.92873 0.78014 0.95594 0.95740 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 7.52 37.16 0.28 -1.98 16 2 C -0.09 -0.99 2.59 -90.62 -0.23 -1.23 16 3 C -0.15 -1.52 9.18 37.16 0.34 -1.18 16 4 C -0.12 -1.18 4.47 -26.74 -0.12 -1.30 16 5 C 0.09 0.93 2.13 -67.72 -0.14 0.78 16 6 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 7 C -0.11 -1.10 4.88 -26.65 -0.13 -1.23 16 8 C -0.12 -1.18 6.00 -26.61 -0.16 -1.33 16 9 C -0.11 -1.32 6.09 -26.65 -0.16 -1.49 16 10 C 0.05 0.72 5.11 -3.84 -0.02 0.70 16 11 N -0.50 -6.76 1.30 -228.12 -0.30 -7.06 16 12 C 0.02 0.34 4.09 -4.97 -0.02 0.32 16 13 C 0.50 9.75 6.93 -10.98 -0.08 9.67 16 14 O -0.54 -12.41 14.46 5.56 0.08 -12.33 16 15 N -0.72 -15.00 5.55 -61.47 -0.34 -15.34 16 16 C 0.25 6.69 5.43 -5.20 -0.03 6.66 16 17 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 18 H 0.06 1.59 7.60 -52.48 -0.40 1.20 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 21 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H 0.11 1.76 5.48 -51.93 -0.28 1.47 16 26 H 0.04 0.68 6.18 -51.93 -0.32 0.36 16 27 H 0.03 0.50 8.13 -51.93 -0.42 0.07 16 28 H 0.07 0.75 5.94 -51.93 -0.31 0.44 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.71 5.65 -51.93 -0.29 0.42 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.85 6.15 -51.93 -0.32 0.53 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.09 1.57 6.21 -51.93 -0.32 1.24 16 42 H 0.11 1.37 4.20 -51.93 -0.22 1.15 16 43 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 44 H 0.39 7.00 8.32 -40.82 -0.34 6.66 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 350.69 15.07 5.28 5.28 Total: -1.00 -30.45 350.69 -8.73 -39.18 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.28 Total: 4.80 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.89 Total: -4.98 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.10 Total: -47.84 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.08 Total: -12.33 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.45 -8.73 -39.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757860584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.782 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds