Wall clock time and date at job start Tue Mar 31 2020 05:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.47066 * 2 1 4 4 C 1.52995 * 109.46899 * 120.00328 * 2 1 3 5 5 C 1.53005 * 109.46941 * 175.00078 * 4 2 1 6 6 H 1.08996 * 109.50237 * 54.92059 * 5 4 2 7 7 C 1.53115 * 109.50064 * 294.80007 * 5 4 2 8 8 C 1.53120 * 109.16144 * 182.40611 * 7 5 4 9 9 C 1.53034 * 109.27844 * 57.65519 * 8 7 5 10 10 N 1.46845 * 109.52093 * 300.82199 * 9 8 7 11 11 C 1.46899 * 111.00038 * 185.84048 * 10 9 8 12 12 C 1.50698 * 109.47410 * 169.39818 * 11 10 9 13 13 O 1.21278 * 119.99769 * 353.73549 * 12 11 10 14 14 N 1.34781 * 119.99768 * 173.72950 * 12 11 10 15 15 C 1.46504 * 119.99809 * 180.02562 * 14 12 11 16 16 C 1.50691 * 109.47161 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00085 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00003 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00015 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99918 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46697 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.46871 * 299.99807 * 20 18 16 23 23 H 1.48490 * 109.47086 * 60.00290 * 20 18 16 24 24 C 1.46848 * 111.19986 * 61.74658 * 10 9 8 25 25 H 1.09004 * 109.46763 * 299.99676 * 1 2 3 26 26 H 1.08998 * 109.46867 * 59.99707 * 1 2 3 27 27 H 1.08999 * 109.47001 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46763 * 240.00324 * 2 1 3 29 29 H 1.08998 * 109.47392 * 300.00435 * 3 2 1 30 30 H 1.09004 * 109.47065 * 60.00509 * 3 2 1 31 31 H 1.09001 * 109.47158 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47833 * 54.99889 * 4 2 1 33 33 H 1.09005 * 109.47396 * 294.99678 * 4 2 1 34 34 H 1.09001 * 109.52995 * 302.30825 * 7 5 4 35 35 H 1.08998 * 109.52431 * 62.50032 * 7 5 4 36 36 H 1.09002 * 109.50597 * 177.60109 * 8 7 5 37 37 H 1.09004 * 109.49972 * 297.67664 * 8 7 5 38 38 H 1.09003 * 109.46091 * 180.81048 * 9 8 7 39 39 H 1.08998 * 109.46281 * 60.84291 * 9 8 7 40 40 H 1.09010 * 109.47328 * 49.39719 * 11 10 9 41 41 H 1.08998 * 109.47253 * 289.40468 * 11 10 9 42 42 H 0.96997 * 120.00676 * 0.02562 * 14 12 11 43 43 H 1.08995 * 109.46993 * 59.99903 * 15 14 12 44 44 H 1.09010 * 109.46832 * 300.00519 * 15 14 12 45 45 H 0.96993 * 119.99741 * 359.97438 * 19 18 16 46 46 H 1.08995 * 109.46194 * 58.26602 * 24 10 9 47 47 H 1.09002 * 109.46318 * 178.24404 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 1 3.9959 0.1607 1.0513 7 6 3.9659 -1.7297 0.0149 8 6 5.4893 -1.8829 -0.0030 9 6 5.9548 -2.4609 1.3353 10 7 5.5477 -1.5647 2.4250 11 6 6.0966 -2.0160 3.7107 12 6 5.8828 -0.9471 4.7513 13 8 5.4317 0.1315 4.4288 14 7 6.1926 -1.1900 6.0403 15 6 5.9842 -0.1511 7.0520 16 6 6.4071 -0.6718 8.4013 17 1 6.7930 -1.6761 8.4958 18 6 6.3024 0.1341 9.5151 19 7 5.8329 1.3572 9.4000 20 14 6.8274 -0.5112 11.1877 21 1 6.6159 0.5419 12.2132 22 1 6.0179 -1.7074 11.5330 23 1 8.2649 -0.8812 11.1465 24 6 4.0861 -1.4397 2.4918 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9562 0.8901 31 1 3.1301 1.4424 -0.0005 32 1 1.6054 -1.7198 1.2951 33 1 1.7517 -0.1584 2.1370 34 1 3.5028 -2.7095 0.1315 35 1 3.6342 -1.2781 -0.9200 36 1 5.7780 -2.5560 -0.8103 37 1 5.9512 -0.9080 -0.1594 38 1 7.0405 -2.5577 1.3312 39 1 5.5034 -3.4418 1.4839 40 1 7.1640 -2.2092 3.6024 41 1 5.5915 -2.9309 4.0204 42 1 6.5536 -2.0525 6.2982 43 1 4.9291 0.1209 7.0815 44 1 6.5787 0.7269 6.7990 45 1 5.5607 1.6924 8.5314 46 1 3.6435 -2.4253 2.6349 47 1 3.8145 -0.7947 3.3275 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759392457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:40 Heat of formation + Delta-G solvation = -71.127896 kcal Electronic energy + Delta-G solvation = -22811.383651 eV Core-core repulsion = 19606.465199 eV Total energy + Delta-G solvation = -3204.918452 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.79115 -38.42316 -36.46435 -34.38768 -33.20593 -32.38271 -31.35162 -28.22672 -27.28690 -26.29524 -26.03063 -23.48173 -22.38980 -21.98634 -20.12291 -19.67874 -19.40081 -17.40741 -16.28569 -15.83580 -15.59554 -15.21393 -14.80570 -14.47699 -14.35515 -13.88006 -13.82656 -13.72876 -13.45178 -13.29028 -12.82902 -12.49135 -12.43147 -12.30183 -12.16994 -11.95917 -11.81065 -11.43256 -11.34270 -11.08430 -11.02134 -10.99903 -10.80001 -10.74694 -10.36976 -10.21777 -10.16161 -10.10427 -9.10866 -8.77932 -8.67175 -8.19855 -7.95865 -6.51372 -4.24869 3.32619 3.37268 3.39370 3.58132 3.64298 4.24348 4.46232 4.60503 4.71337 4.77054 4.87272 4.92902 4.96043 5.21895 5.27376 5.31827 5.35856 5.42327 5.44220 5.50407 5.52157 5.55043 5.57685 5.60533 5.70251 5.73566 5.80746 5.81255 5.87876 5.95621 5.99606 6.06228 6.10480 6.19049 6.24493 6.39243 6.51393 6.95737 7.09461 7.18316 7.23572 7.35514 7.67635 8.27348 8.49284 8.72448 9.03704 9.49095 10.88793 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.003275 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.588259 B = 8548.062731 C = 9453.414679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.150 4.150 4 C -0.110 4.110 5 C -0.083 4.083 6 H 0.084 0.916 7 C -0.116 4.116 8 C -0.116 4.116 9 C 0.056 3.944 10 N -0.519 5.519 11 C 0.037 3.963 12 C 0.498 3.502 13 O -0.537 6.537 14 N -0.712 5.712 15 C 0.242 3.758 16 C -0.623 4.623 17 H 0.056 0.944 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 1.076 2.924 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.286 1.286 24 C 0.059 3.941 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.030 0.970 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.391 0.609 43 H 0.015 0.985 44 H 0.016 0.984 45 H 0.273 0.727 46 H 0.024 0.976 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.003 -8.748 -20.034 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.207 4.207 4 C -0.148 4.148 5 C -0.101 4.101 6 H 0.103 0.897 7 C -0.153 4.153 8 C -0.153 4.153 9 C -0.072 4.072 10 N -0.243 5.243 11 C -0.095 4.095 12 C 0.282 3.718 13 O -0.415 6.415 14 N -0.361 5.361 15 C 0.121 3.879 16 C -0.662 4.662 17 H 0.075 0.925 18 C -0.184 4.184 19 N -0.536 5.536 20 Si 0.903 3.097 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.213 1.213 24 C -0.068 4.068 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.117 0.883 41 H 0.073 0.927 42 H 0.224 0.776 43 H 0.033 0.967 44 H 0.034 0.966 45 H 0.083 0.917 46 H 0.042 0.958 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.016 -7.067 -18.735 20.642 hybrid contribution -0.203 -1.743 -1.271 2.167 sum -5.219 -8.810 -20.007 22.475 Atomic orbital electron populations 1.21852 0.95584 1.01426 1.01638 1.21126 0.95282 0.96542 0.98459 1.21900 1.01566 0.95796 1.01471 1.21653 0.94889 1.00230 0.98013 1.21200 0.94716 1.00300 0.93908 0.89741 1.21688 0.95601 0.99491 0.98549 1.21567 0.96129 1.01778 0.95863 1.22105 1.00252 0.93438 0.91397 1.61514 1.11226 1.49143 1.02399 1.21982 1.01679 0.95920 0.89869 1.20379 0.79116 0.88916 0.83396 1.90639 1.44801 1.25330 1.80710 1.46284 1.64110 1.18491 1.07213 1.19125 0.96149 0.86852 0.85801 1.22067 1.48798 1.02386 0.92912 0.92538 1.25881 0.94464 0.94319 1.03705 1.70758 1.38490 1.16046 1.28338 0.83452 0.76188 0.75412 0.74672 1.20547 1.21312 1.21283 1.22239 0.86176 0.99127 0.99287 0.92665 0.92966 0.92953 0.91233 0.93188 0.92591 0.92139 0.92329 0.91623 0.92582 0.91775 0.91767 0.91008 0.90873 0.95211 0.88293 0.92702 0.77615 0.96690 0.96598 0.91689 0.95830 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 2 C -0.10 -0.89 2.79 -90.62 -0.25 -1.14 16 3 C -0.15 -1.47 8.95 37.15 0.33 -1.14 16 4 C -0.11 -1.18 4.15 -26.73 -0.11 -1.29 16 5 C -0.08 -0.99 2.22 -90.54 -0.20 -1.19 16 6 H 0.08 1.16 6.34 -51.93 -0.33 0.83 16 7 C -0.12 -1.14 4.99 -26.61 -0.13 -1.28 16 8 C -0.12 -1.15 6.09 -26.65 -0.16 -1.31 16 9 C 0.06 0.63 5.46 -3.84 -0.02 0.60 16 10 N -0.52 -7.53 4.35 -236.11 -1.03 -8.56 16 11 C 0.04 0.54 5.45 -4.98 -0.03 0.52 16 12 C 0.50 10.03 7.36 -10.98 -0.08 9.95 16 13 O -0.54 -12.90 14.71 5.56 0.08 -12.81 16 14 N -0.71 -15.19 5.55 -61.47 -0.34 -15.53 16 15 C 0.24 6.45 4.74 -5.20 -0.02 6.43 16 16 C -0.62 -17.26 9.28 -34.44 -0.32 -17.58 16 17 H 0.06 1.48 7.60 -52.49 -0.40 1.08 16 18 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 19 N -0.90 -27.49 13.65 55.43 0.76 -26.73 16 20 Si 1.08 24.49 29.90 -169.99 -5.08 19.41 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.06 0.86 4.40 -3.83 -0.02 0.84 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.61 6.41 -51.93 -0.33 0.28 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.63 6.46 -51.93 -0.34 0.30 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.57 6.59 -51.93 -0.34 0.23 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.75 8.01 -51.93 -0.42 0.33 16 39 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.10 1.27 7.98 -51.92 -0.41 0.85 16 41 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 42 H 0.39 7.22 8.32 -40.82 -0.34 6.88 16 43 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 44 H 0.02 0.47 8.01 -51.92 -0.42 0.05 16 45 H 0.27 8.43 7.22 -40.82 -0.29 8.13 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.09 1.62 6.06 -51.93 -0.31 1.31 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -32.09 362.83 -9.56 -41.65 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -8.64 Total: 4.08 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -0.77 Total: -6.97 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.61 Total: -50.83 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.08 Total: 19.41 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.09 -9.56 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759392457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.479 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds