Wall clock time and date at job start Tue Mar 31 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47254 * 2 1 4 4 C 1.52998 * 109.47402 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47338 * 305.00415 * 4 3 2 6 6 C 1.52998 * 109.46866 * 65.00061 * 4 3 2 7 7 C 1.53006 * 109.47438 * 184.99744 * 4 3 2 8 8 H 1.08995 * 110.42087 * 302.32232 * 7 4 3 9 9 C 1.54915 * 110.36917 * 64.62879 * 7 4 3 10 10 C 1.55138 * 101.64918 * 155.89773 * 9 7 4 11 11 C 1.54320 * 103.02210 * 324.34672 * 10 9 7 12 12 N 1.47437 * 107.23257 * 22.28526 * 11 10 9 13 13 C 1.46901 * 111.00223 * 123.25511 * 12 11 10 14 14 C 1.50697 * 109.46950 * 49.15830 * 13 12 11 15 15 O 1.21283 * 120.00257 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00148 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00233 * 180.02562 * 16 14 13 18 18 C 1.50704 * 109.47388 * 179.97438 * 17 16 14 19 19 H 1.07993 * 119.99607 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00042 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99955 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99807 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47240 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46922 * 119.99965 * 22 20 18 25 25 H 1.48498 * 109.47102 * 239.99904 * 22 20 18 26 26 H 1.08998 * 109.47218 * 60.00097 * 1 2 3 27 27 H 1.09004 * 109.46819 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47060 * 299.99643 * 1 2 3 29 29 H 1.09004 * 109.47538 * 239.99808 * 2 1 3 30 30 H 1.09006 * 109.47082 * 120.00236 * 2 1 3 31 31 H 1.09000 * 109.47256 * 59.99933 * 3 2 1 32 32 H 1.09003 * 109.47518 * 299.99665 * 3 2 1 33 33 H 1.09006 * 109.47374 * 179.97438 * 6 4 3 34 34 H 1.08996 * 109.47523 * 300.00243 * 6 4 3 35 35 H 1.09007 * 109.47118 * 60.00182 * 6 4 3 36 36 H 1.08995 * 110.99221 * 273.99239 * 9 7 4 37 37 H 1.09001 * 110.98790 * 37.81142 * 9 7 4 38 38 H 1.09000 * 110.70480 * 205.96311 * 10 9 7 39 39 H 1.09005 * 110.70206 * 82.73348 * 10 9 7 40 40 H 1.08998 * 109.88703 * 262.87492 * 11 10 9 41 41 H 1.08999 * 109.88555 * 141.69210 * 11 10 9 42 42 H 1.09000 * 109.46943 * 169.15261 * 13 12 11 43 43 H 1.09001 * 109.47034 * 289.15700 * 13 12 11 44 44 H 0.96996 * 120.00272 * 359.97438 * 16 14 13 45 45 H 1.09011 * 109.47137 * 299.99372 * 17 16 14 46 46 H 1.09001 * 109.47455 * 59.99024 * 17 16 14 47 47 H 0.96999 * 119.99986 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8426 6 6 4.0805 0.8327 -1.3064 7 6 4.0800 2.8795 0.1263 8 1 3.6922 3.4932 -0.6868 9 6 3.6725 3.4785 1.4956 10 6 4.7472 4.5808 1.6877 11 6 6.0098 3.9475 1.0662 12 7 5.5583 2.9027 0.1290 13 6 6.0833 3.1444 -1.2216 14 6 7.5655 3.4052 -1.1450 15 8 8.1290 3.3917 -0.0711 16 7 8.2649 3.6546 -2.2698 17 6 9.7060 3.9076 -2.1954 18 6 10.2446 4.1557 -3.5809 19 1 9.5801 4.1272 -4.4316 20 6 11.5859 4.4189 -3.7621 21 7 12.3950 4.4540 -2.7260 22 14 12.2536 4.7257 -5.4795 23 1 11.1468 4.6317 -6.4651 24 1 12.8569 6.0813 -5.5412 25 1 13.2879 3.7086 -5.7974 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 5.1705 0.8331 -1.3062 34 1 3.7172 -0.1911 -1.3961 35 1 3.7175 1.4220 -2.1485 36 1 2.6731 3.9111 1.4507 37 1 3.7368 2.7289 2.2843 38 1 4.9014 4.7883 2.7466 39 1 4.4680 5.4885 1.1526 40 1 6.6251 3.5031 1.8485 41 1 6.5793 4.7062 0.5295 42 1 5.9002 2.2689 -1.8446 43 1 5.5839 4.0104 -1.6559 44 1 7.8143 3.6659 -3.1286 45 1 9.8895 4.7827 -1.5718 46 1 10.2051 3.0412 -1.7615 47 1 13.3386 4.6389 -2.8536 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767904069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:19 Heat of formation + Delta-G solvation = -56.909681 kcal Electronic energy + Delta-G solvation = -22816.466046 eV Core-core repulsion = 19612.164142 eV Total energy + Delta-G solvation = -3204.301904 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.00515 -38.24355 -36.13096 -34.16010 -32.53628 -32.26019 -31.99062 -27.95701 -27.87644 -26.64738 -25.78387 -22.99181 -22.29215 -21.16188 -20.70840 -19.67969 -19.53966 -16.91917 -16.51786 -15.78598 -15.48526 -15.41092 -14.90808 -14.63623 -14.27734 -14.08995 -13.75160 -13.44779 -13.13993 -12.95709 -12.81273 -12.60814 -12.40800 -12.19317 -11.94659 -11.85541 -11.70660 -11.42679 -11.15851 -11.01605 -10.99031 -10.92815 -10.83634 -10.75877 -10.55759 -10.46757 -10.32112 -10.24055 -9.37527 -8.86210 -8.72781 -8.13083 -7.85152 -6.16761 -4.23532 3.23174 3.30204 3.33267 3.39792 3.78346 4.21613 4.38106 4.58488 4.69301 4.76124 4.81814 4.91059 5.01295 5.15212 5.19398 5.23159 5.31792 5.41648 5.42542 5.48363 5.52521 5.56661 5.64436 5.66499 5.70789 5.75788 5.82980 5.83342 5.90726 5.96015 6.01630 6.07253 6.12075 6.21628 6.37149 6.39948 6.51790 7.12940 7.17973 7.33848 7.46359 7.52660 7.68211 7.97391 8.64348 8.79262 9.12734 9.43304 10.93505 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026437 B = 0.003121 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.852043 B = 8969.993817 C = 9722.010086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.074 4.074 5 H 0.077 0.923 6 C -0.153 4.153 7 C 0.076 3.924 8 H 0.052 0.948 9 C -0.122 4.122 10 C -0.150 4.150 11 C 0.060 3.940 12 N -0.506 5.506 13 C 0.023 3.977 14 C 0.495 3.505 15 O -0.541 6.541 16 N -0.714 5.714 17 C 0.251 3.749 18 C -0.542 4.542 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.903 3.097 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.055 0.945 44 H 0.389 0.611 45 H 0.025 0.975 46 H 0.027 0.973 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.813 -4.738 4.793 23.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.093 4.093 5 H 0.095 0.905 6 C -0.210 4.210 7 C -0.032 4.032 8 H 0.070 0.930 9 C -0.160 4.160 10 C -0.189 4.189 11 C -0.068 4.068 12 N -0.231 5.231 13 C -0.108 4.108 14 C 0.280 3.720 15 O -0.419 6.419 16 N -0.363 5.363 17 C 0.130 3.870 18 C -0.581 4.581 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.122 0.878 43 H 0.073 0.927 44 H 0.222 0.778 45 H 0.043 0.957 46 H 0.045 0.955 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.962 -5.184 5.766 23.290 hybrid contribution 0.026 1.015 -1.698 1.978 sum -21.936 -4.169 4.068 22.696 Atomic orbital electron populations 1.21781 0.96229 1.01362 1.01614 1.21570 0.95396 0.97140 1.02197 1.21672 0.95090 0.96675 1.01830 1.21070 0.93908 0.95224 0.99084 0.90509 1.22009 1.02211 1.00159 0.96577 1.22678 0.87566 0.96018 0.96983 0.92956 1.22724 0.98201 0.97979 0.97056 1.22940 0.96372 0.98045 1.01551 1.22767 0.95155 0.92712 0.96128 1.63290 1.06936 1.46930 1.05914 1.22453 0.93905 1.01876 0.92543 1.20346 0.88661 0.78004 0.85030 1.90670 1.71331 1.51653 1.28276 1.46453 1.12145 1.69851 1.07896 1.19083 0.73630 0.96859 0.97383 1.21266 0.94014 1.50363 0.92419 0.91885 1.24959 0.96704 0.94923 0.97490 1.69985 1.04728 1.47891 1.29673 0.86364 0.78996 0.77934 0.83635 1.19641 1.20816 1.20772 0.92908 0.92996 0.92920 0.91755 0.92088 0.91977 0.92255 0.91286 0.92826 0.93310 0.91263 0.90642 0.90973 0.92001 0.89918 0.92061 0.87791 0.92750 0.77837 0.95673 0.95547 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.13 -0.94 5.69 -26.74 -0.15 -1.09 16 3 C -0.11 -0.92 4.59 -26.74 -0.12 -1.04 16 4 C -0.07 -0.73 2.13 -90.62 -0.19 -0.92 16 5 H 0.08 0.85 8.13 -51.93 -0.42 0.42 16 6 C -0.15 -1.54 7.83 37.16 0.29 -1.25 16 7 C 0.08 0.85 2.10 -66.18 -0.14 0.71 16 8 H 0.05 0.58 7.61 -51.93 -0.40 0.18 16 9 C -0.12 -1.23 5.55 -24.59 -0.14 -1.36 16 10 C -0.15 -1.74 6.94 -24.91 -0.17 -1.91 16 11 C 0.06 0.91 5.03 -2.84 -0.01 0.90 16 12 N -0.51 -7.33 4.55 -224.81 -1.02 -8.36 16 13 C 0.02 0.35 5.05 -4.98 -0.03 0.32 16 14 C 0.50 9.93 7.10 -10.99 -0.08 9.86 16 15 O -0.54 -12.88 13.81 5.55 0.08 -12.80 16 16 N -0.71 -15.12 5.55 -61.47 -0.34 -15.46 16 17 C 0.25 6.70 5.43 -5.19 -0.03 6.67 16 18 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 19 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 22 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.48 7.10 -51.93 -0.37 0.11 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.83 5.77 -51.93 -0.30 0.53 16 34 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.59 7.92 -51.93 -0.41 0.18 16 37 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.41 7.96 -51.93 -0.41 1.00 16 41 H 0.06 1.08 6.12 -51.93 -0.32 0.76 16 42 H 0.10 1.38 5.40 -51.93 -0.28 1.10 16 43 H 0.05 0.73 7.82 -51.93 -0.41 0.32 16 44 H 0.39 7.06 8.32 -40.82 -0.34 6.72 16 45 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 46 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 360.79 15.07 5.44 5.44 Total: -1.00 -31.04 360.79 -9.47 -40.51 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -8.51 Total: 3.47 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -0.82 Total: -3.22 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.63 Total: -49.30 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.08 Total: -12.80 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.04 -9.47 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767904069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.395 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds