Wall clock time and date at job start Tue Mar 31 2020 06:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47377 * 2 1 4 4 C 1.52993 * 109.47202 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47096 * 288.43096 * 4 3 2 6 6 C 1.52993 * 109.47507 * 48.43453 * 4 3 2 7 7 C 1.53005 * 109.47099 * 168.43519 * 4 3 2 8 8 H 1.08997 * 109.87601 * 317.65675 * 7 4 3 9 9 C 1.54319 * 110.02283 * 196.54301 * 7 4 3 10 10 C 1.55139 * 103.01733 * 218.23419 * 9 7 4 11 11 C 1.54898 * 101.65486 * 35.65232 * 10 9 7 12 12 N 1.47440 * 109.88978 * 78.69032 * 7 4 3 13 13 C 1.46895 * 111.00021 * 356.31375 * 12 7 4 14 14 C 1.50706 * 109.47202 * 163.93958 * 13 12 7 15 15 O 1.21284 * 120.00016 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00046 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00012 * 180.02562 * 16 14 13 18 18 C 1.50705 * 109.47098 * 180.02562 * 17 16 14 19 19 H 1.07994 * 119.99787 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99685 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99717 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00206 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46813 * 90.00213 * 22 20 18 24 24 H 1.48502 * 109.47137 * 210.00316 * 22 20 18 25 25 H 1.48490 * 109.47256 * 330.00188 * 22 20 18 26 26 H 1.08999 * 109.47052 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47409 * 299.99844 * 1 2 3 28 28 H 1.09001 * 109.46981 * 60.00296 * 1 2 3 29 29 H 1.09007 * 109.46798 * 240.00328 * 2 1 3 30 30 H 1.08999 * 109.46770 * 120.00449 * 2 1 3 31 31 H 1.09004 * 109.46807 * 59.99616 * 3 2 1 32 32 H 1.09001 * 109.47098 * 300.00274 * 3 2 1 33 33 H 1.08994 * 109.47411 * 183.96301 * 6 4 3 34 34 H 1.09006 * 109.46759 * 303.95909 * 6 4 3 35 35 H 1.09003 * 109.47412 * 63.95752 * 6 4 3 36 36 H 1.09002 * 110.70758 * 336.61221 * 9 7 4 37 37 H 1.09000 * 110.70911 * 99.84869 * 9 7 4 38 38 H 1.09000 * 110.99049 * 277.55657 * 10 9 7 39 39 H 1.09005 * 110.99031 * 153.74957 * 10 9 7 40 40 H 1.09002 * 110.37529 * 204.09928 * 11 10 9 41 41 H 1.08997 * 110.46847 * 81.80762 * 11 10 9 42 42 H 1.09006 * 109.47180 * 283.93870 * 13 12 7 43 43 H 1.08999 * 109.47827 * 43.93905 * 13 12 7 44 44 H 0.97003 * 119.99811 * 359.97438 * 16 14 13 45 45 H 1.09006 * 109.46972 * 300.00272 * 17 16 14 46 46 H 1.09000 * 109.47470 * 59.99931 * 17 16 14 47 47 H 0.97005 * 120.00346 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 1.1173 0.9741 6 6 4.0796 0.4855 -1.0802 7 6 4.0799 2.8557 -0.2898 8 1 3.4888 3.3071 -1.0866 9 6 5.5663 2.8071 -0.7019 10 6 6.1588 4.0696 -0.0223 11 6 5.3532 4.1205 1.2997 12 7 3.9913 3.6802 0.9293 13 6 3.3634 2.9319 2.0263 14 6 3.6380 3.6309 3.3329 15 8 4.2928 4.6517 3.3487 16 7 3.1559 3.1217 4.4840 17 6 3.4223 3.8015 5.7540 18 6 2.7782 3.0338 6.8795 19 1 2.2253 2.1302 6.6697 20 6 2.8939 3.4857 8.1770 21 7 2.3314 2.8160 9.1591 22 14 3.8497 5.0491 8.5398 23 1 2.9325 6.2154 8.4784 24 1 4.4475 4.9603 9.8962 25 1 4.9288 5.2145 7.5332 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 5.1672 0.4318 -1.0341 34 1 3.6595 -0.5065 -0.9141 35 1 3.7750 0.8494 -2.0615 36 1 6.0429 1.9043 -0.3199 37 1 5.6681 2.8689 -1.7854 38 1 5.9767 4.9593 -0.6251 39 1 7.2237 3.9441 0.1738 40 1 5.3299 5.1376 1.6910 41 1 5.7846 3.4416 2.0353 42 1 2.2871 2.8798 1.8613 43 1 3.7749 1.9232 2.0605 44 1 2.6319 2.3055 4.4713 45 1 4.4985 3.8537 5.9194 46 1 3.0108 4.8103 5.7196 47 1 2.4131 3.1337 10.0720 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767904070.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:24 Heat of formation + Delta-G solvation = -28.037110 kcal Electronic energy + Delta-G solvation = -23393.240693 eV Core-core repulsion = 20190.190798 eV Total energy + Delta-G solvation = -3203.049895 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.53546 -38.40573 -36.09379 -34.29703 -32.52107 -32.32561 -32.12538 -28.43405 -27.76087 -26.82688 -25.97845 -23.19555 -22.17076 -21.07037 -20.69045 -20.14504 -19.16522 -17.38540 -16.59859 -15.99700 -15.57991 -15.28308 -15.00427 -14.78082 -14.56072 -14.02097 -13.75881 -13.60488 -13.24513 -12.89692 -12.72687 -12.51539 -12.40811 -12.28416 -12.16403 -12.01186 -11.90620 -11.65200 -11.44672 -11.11798 -10.98896 -10.91424 -10.84518 -10.67728 -10.43429 -10.32281 -10.17352 -9.97207 -9.49840 -8.91790 -8.77561 -8.15554 -8.05445 -6.21914 -4.24117 3.22817 3.27451 3.33192 3.41601 3.76324 4.19058 4.33189 4.47010 4.59522 4.68805 4.76520 4.94249 5.01631 5.02169 5.13509 5.18876 5.21480 5.35943 5.39548 5.45264 5.51414 5.54918 5.60739 5.62985 5.68260 5.74373 5.79572 5.80251 5.89550 5.95775 6.00030 6.03993 6.14185 6.24483 6.28518 6.34405 6.49471 6.79373 7.06923 7.08049 7.14581 7.26360 7.39889 8.14049 8.51951 8.75209 8.95694 9.38465 10.90065 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017036 B = 0.004325 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.219271 B = 6472.696222 C = 7797.335346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.128 4.128 3 C -0.123 4.123 4 C -0.121 4.121 5 H 0.083 0.917 6 C -0.148 4.148 7 C 0.077 3.923 8 H 0.085 0.915 9 C -0.138 4.138 10 C -0.139 4.139 11 C 0.057 3.943 12 N -0.507 5.507 13 C 0.010 3.990 14 C 0.495 3.505 15 O -0.547 6.547 16 N -0.706 5.706 17 C 0.222 3.778 18 C -0.543 4.543 19 H 0.079 0.921 20 C 0.078 3.922 21 N -0.893 5.893 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.261 1.261 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.041 0.959 42 H 0.109 0.891 43 H 0.076 0.924 44 H 0.395 0.605 45 H 0.024 0.976 46 H 0.020 0.980 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.295 -5.064 -21.960 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.160 4.160 4 C -0.140 4.140 5 H 0.101 0.899 6 C -0.206 4.206 7 C -0.031 4.031 8 H 0.103 0.897 9 C -0.176 4.176 10 C -0.178 4.178 11 C -0.070 4.070 12 N -0.231 5.231 13 C -0.121 4.121 14 C 0.280 3.720 15 O -0.426 6.426 16 N -0.355 5.355 17 C 0.100 3.900 18 C -0.581 4.581 19 H 0.097 0.903 20 C -0.126 4.126 21 N -0.530 5.530 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.186 1.186 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.059 0.941 42 H 0.127 0.873 43 H 0.094 0.906 44 H 0.229 0.771 45 H 0.041 0.959 46 H 0.038 0.962 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.412 -3.887 -21.793 22.268 hybrid contribution 0.573 -0.400 0.584 0.910 sum 2.984 -4.287 -21.209 21.843 Atomic orbital electron populations 1.21787 0.96023 1.01433 1.01895 1.21653 0.95716 0.97108 1.02015 1.21985 0.94163 0.96866 1.03005 1.21845 0.96275 0.95610 1.00227 0.89891 1.21964 1.00890 0.99196 0.98544 1.22604 0.95774 0.91260 0.93449 0.89729 1.22911 0.95590 0.98453 1.00643 1.22868 0.99422 0.97881 0.97602 1.23152 0.86129 1.03141 0.94546 1.63750 1.20707 1.36058 1.02563 1.22838 1.02325 0.97017 0.89891 1.20563 0.80221 0.85636 0.85611 1.90633 1.40151 1.24846 1.86965 1.46166 1.53587 1.28571 1.07168 1.19468 0.96650 0.93322 0.80600 1.21096 1.35121 1.11629 0.90284 0.90277 1.24792 0.94872 0.97074 0.95849 1.69880 1.43677 1.39375 1.00065 0.86814 0.81153 0.83618 0.78082 1.19824 1.20919 1.18557 0.92988 0.92516 0.92960 0.91781 0.92043 0.90687 0.91826 0.92597 0.92141 0.92707 0.91289 0.91154 0.91022 0.91279 0.88036 0.94100 0.87323 0.90616 0.77135 0.95853 0.96171 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.13 -1.05 5.23 -26.73 -0.14 -1.19 16 3 C -0.12 -1.11 4.58 -26.74 -0.12 -1.23 16 4 C -0.12 -1.12 1.72 -90.62 -0.16 -1.27 16 5 H 0.08 0.86 5.24 -51.93 -0.27 0.59 16 6 C -0.15 -1.15 7.99 37.15 0.30 -0.86 16 7 C 0.08 0.83 3.14 -66.72 -0.21 0.62 16 8 H 0.08 0.91 7.87 -51.93 -0.41 0.50 16 9 C -0.14 -1.35 5.36 -24.91 -0.13 -1.48 16 10 C -0.14 -1.58 7.08 -24.60 -0.17 -1.76 16 11 C 0.06 0.85 4.82 -2.30 -0.01 0.84 16 12 N -0.51 -7.08 5.29 -224.78 -1.19 -8.27 16 13 C 0.01 0.14 4.36 -4.98 -0.02 0.12 16 14 C 0.49 9.39 7.27 -10.98 -0.08 9.31 16 15 O -0.55 -12.16 13.05 5.55 0.07 -12.09 16 16 N -0.71 -14.26 5.55 -61.47 -0.34 -14.60 16 17 C 0.22 5.47 4.50 -5.19 -0.02 5.45 16 18 C -0.54 -14.92 9.83 -34.44 -0.34 -15.25 16 19 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 20 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 21 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 22 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.26 -6.38 6.54 56.52 0.37 -6.02 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.49 6.22 -51.92 -0.32 0.16 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.75 4.91 -51.93 -0.25 0.49 16 32 H 0.06 0.57 7.91 -51.93 -0.41 0.16 16 33 H 0.06 0.43 6.33 -51.93 -0.33 0.10 16 34 H 0.06 0.44 6.06 -51.93 -0.31 0.13 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.66 6.54 -51.93 -0.34 0.32 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 1.78 6.67 -51.93 -0.35 1.44 16 41 H 0.04 0.66 7.20 -51.93 -0.37 0.29 16 42 H 0.11 1.39 5.38 -51.93 -0.28 1.11 16 43 H 0.08 0.96 5.05 -51.93 -0.26 0.70 16 44 H 0.40 7.02 8.32 -40.82 -0.34 6.68 16 45 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 46 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 47 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 347.06 15.07 5.23 5.23 Total: -1.00 -30.89 347.06 -8.95 -39.84 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -7.98 Total: 4.25 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -0.84 Total: -5.48 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.76 Total: -48.62 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.07 Total: -12.09 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.89 -8.95 -39.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767904070.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.804 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds