Wall clock time and date at job start Tue Mar 31 2020 06:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47485 * 2 1 4 4 C 1.52997 * 109.46957 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47316 * 55.00110 * 4 3 2 6 6 C 1.52995 * 109.47321 * 294.99555 * 4 3 2 7 7 C 1.53000 * 109.46872 * 174.99667 * 4 3 2 8 8 H 1.09005 * 109.88438 * 311.32731 * 7 4 3 9 9 C 1.54322 * 109.89015 * 72.52252 * 7 4 3 10 10 C 1.55145 * 103.01886 * 141.68863 * 9 7 4 11 11 C 1.54909 * 101.65352 * 324.35174 * 10 9 7 12 12 N 1.47443 * 109.89079 * 190.29551 * 7 4 3 13 13 C 1.46901 * 110.99807 * 3.85229 * 12 7 4 14 14 C 1.50694 * 109.47112 * 162.10514 * 13 12 7 15 15 O 1.21285 * 120.00200 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00040 * 179.97438 * 14 13 12 17 17 C 1.46502 * 120.00016 * 179.97438 * 16 14 13 18 18 C 1.50705 * 109.47287 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99406 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00201 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00146 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00006 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46963 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47364 * 119.99586 * 22 20 18 25 25 H 1.48498 * 109.46600 * 239.99354 * 22 20 18 26 26 H 1.09004 * 109.47175 * 300.00740 * 1 2 3 27 27 H 1.08997 * 109.46888 * 60.00419 * 1 2 3 28 28 H 1.09004 * 109.47386 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47175 * 239.99260 * 2 1 3 30 30 H 1.09013 * 109.46688 * 119.99953 * 2 1 3 31 31 H 1.08990 * 109.47440 * 59.99476 * 3 2 1 32 32 H 1.09006 * 109.46493 * 299.99519 * 3 2 1 33 33 H 1.09004 * 109.47007 * 328.07210 * 6 4 3 34 34 H 1.08991 * 109.47289 * 88.06738 * 6 4 3 35 35 H 1.09006 * 109.47451 * 208.07610 * 6 4 3 36 36 H 1.09000 * 110.70793 * 260.07547 * 9 7 4 37 37 H 1.08996 * 110.70175 * 23.31087 * 9 7 4 38 38 H 1.09000 * 110.98679 * 82.43750 * 10 9 7 39 39 H 1.08994 * 110.98815 * 206.21765 * 10 9 7 40 40 H 1.09002 * 110.37113 * 278.23662 * 11 10 9 41 41 H 1.09001 * 110.37340 * 155.90176 * 11 10 9 42 42 H 1.08995 * 109.47233 * 42.10130 * 13 12 7 43 43 H 1.08999 * 109.46961 * 282.09897 * 13 12 7 44 44 H 0.96995 * 119.99895 * 0.02562 * 16 14 13 45 45 H 1.09002 * 109.46856 * 60.00293 * 17 16 14 46 46 H 1.09003 * 109.47350 * 300.00182 * 17 16 14 47 47 H 0.97003 * 119.99725 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4423 0.0006 5 1 3.9337 0.8527 -0.8409 6 6 4.0795 0.8330 1.3083 7 6 4.0802 2.8793 -0.1252 8 1 3.5659 3.3850 -0.9425 9 6 3.8437 3.6380 1.1977 10 6 5.1190 4.5112 1.3325 11 6 6.2035 3.5741 0.7448 12 7 5.5336 2.8757 -0.3730 13 6 6.0399 1.5041 -0.5158 14 6 7.3885 1.5339 -1.1877 15 8 7.8794 2.5934 -1.5157 16 7 8.0491 0.3832 -1.4240 17 6 9.3600 0.4121 -2.0776 18 6 9.8795 -0.9950 -2.2241 19 1 9.2921 -1.8274 -1.8657 20 6 11.1049 -1.2194 -2.8146 21 7 11.8204 -0.2057 -3.2506 22 14 11.7485 -2.9636 -2.9968 23 1 10.7608 -3.9172 -2.4309 24 1 11.9605 -3.2653 -4.4352 25 1 13.0360 -3.0946 -2.2685 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5140 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 1.6767 1.9563 0.8898 32 1 1.6768 1.9562 -0.8901 33 1 3.3779 1.0581 2.1116 34 1 4.1679 -0.2475 1.1955 35 1 5.0554 1.2542 1.5496 36 1 2.9537 4.2636 1.1295 37 1 3.7636 2.9416 2.0323 38 1 5.0311 5.4242 0.7435 39 1 5.3258 4.7416 2.3775 40 1 6.5336 2.8573 1.4967 41 1 7.0488 4.1557 0.3768 42 1 5.3453 0.9216 -1.1210 43 1 6.1348 1.0475 0.4693 44 1 7.6564 -0.4641 -1.1620 45 1 10.0546 0.9952 -1.4730 46 1 9.2647 0.8683 -3.0631 47 1 11.4860 0.7000 -3.1563 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767904072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:29 Heat of formation + Delta-G solvation = -43.672656 kcal Electronic energy + Delta-G solvation = -23137.122493 eV Core-core repulsion = 19933.394589 eV Total energy + Delta-G solvation = -3203.727904 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.56438 -38.33307 -36.03081 -34.31797 -32.73625 -32.28448 -31.93503 -28.22747 -27.53635 -26.94431 -25.39530 -23.21957 -22.58774 -21.75252 -20.72410 -19.77883 -18.81271 -17.51519 -16.52986 -16.18489 -15.62318 -15.35830 -15.18212 -14.70361 -14.23402 -14.06850 -13.78104 -13.58191 -13.42331 -12.98632 -12.68147 -12.60078 -12.28955 -12.21002 -12.08028 -11.94190 -11.66804 -11.59527 -11.34035 -11.23957 -11.07347 -10.98376 -10.81138 -10.75967 -10.70333 -10.59170 -10.27902 -10.18706 -9.06460 -8.75534 -8.64514 -8.09368 -7.91513 -6.49726 -4.22920 3.38089 3.39358 3.43021 3.54752 3.71941 4.25546 4.39264 4.46484 4.54774 4.62810 4.71026 4.79722 4.90377 5.00679 5.08622 5.09593 5.27919 5.29505 5.35267 5.43063 5.43461 5.47248 5.52731 5.57498 5.61083 5.64042 5.68014 5.71104 5.80814 5.88844 5.90806 5.92367 6.00113 6.09352 6.16843 6.20635 6.26304 6.97399 7.06981 7.12241 7.26756 7.41160 7.70991 8.30707 8.53790 8.75571 9.11002 9.51406 10.90594 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.003657 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.883328 B = 7655.549479 C = 8829.383856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.110 4.110 4 C -0.117 4.117 5 H 0.085 0.915 6 C -0.157 4.157 7 C 0.077 3.923 8 H 0.085 0.915 9 C -0.141 4.141 10 C -0.130 4.130 11 C 0.047 3.953 12 N -0.501 5.501 13 C 0.013 3.987 14 C 0.495 3.505 15 O -0.540 6.540 16 N -0.714 5.714 17 C 0.242 3.758 18 C -0.622 4.622 19 H 0.057 0.943 20 C 0.021 3.979 21 N -0.904 5.904 22 Si 1.081 2.919 23 H -0.289 1.289 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.041 0.959 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.072 0.928 44 H 0.390 0.610 45 H 0.014 0.986 46 H 0.015 0.985 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.889 2.639 10.977 24.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.148 4.148 4 C -0.136 4.136 5 H 0.103 0.897 6 C -0.214 4.214 7 C -0.031 4.031 8 H 0.103 0.897 9 C -0.179 4.179 10 C -0.168 4.168 11 C -0.080 4.080 12 N -0.225 5.225 13 C -0.117 4.117 14 C 0.280 3.720 15 O -0.417 6.417 16 N -0.363 5.363 17 C 0.120 3.880 18 C -0.660 4.660 19 H 0.075 0.925 20 C -0.184 4.184 21 N -0.539 5.539 22 Si 0.909 3.091 23 H -0.215 1.215 24 H -0.211 1.211 25 H -0.212 1.212 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.106 0.894 42 H 0.124 0.876 43 H 0.089 0.911 44 H 0.223 0.777 45 H 0.032 0.968 46 H 0.033 0.967 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.109 2.783 9.688 22.493 hybrid contribution -1.635 0.011 1.397 2.150 sum -21.743 2.793 11.084 24.565 Atomic orbital electron populations 1.21775 0.96093 1.01471 1.01642 1.21565 0.95602 0.97015 1.02192 1.21652 0.94275 0.96790 1.02053 1.21926 0.95935 0.96775 0.99004 0.89679 1.22262 1.01189 1.00869 0.97063 1.22574 0.88635 0.94699 0.97172 0.89684 1.22970 0.98347 0.98772 0.97796 1.22711 0.94688 0.98677 1.00753 1.23112 0.97639 0.96387 0.90892 1.63361 1.02378 1.14194 1.42531 1.22742 0.95882 0.91970 1.01154 1.20551 0.86635 0.84645 0.80219 1.90634 1.68689 1.30286 1.52096 1.46259 1.21895 1.07479 1.60679 1.19118 0.78894 0.97887 0.92069 1.22127 1.07095 0.91647 1.45159 0.92464 1.25877 0.93410 1.06043 0.93100 1.70693 1.39725 1.00420 1.43022 0.83375 0.75651 0.73300 0.76782 1.21454 1.21139 1.21175 0.92943 0.92811 0.92906 0.91982 0.91923 0.91973 0.91890 0.92442 0.92332 0.91963 0.91135 0.90711 0.90730 0.91094 0.94079 0.89388 0.87589 0.91065 0.77749 0.96766 0.96672 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.13 -0.94 5.75 -26.73 -0.15 -1.09 16 3 C -0.11 -0.85 4.40 -26.73 -0.12 -0.97 16 4 C -0.12 -1.08 1.67 -90.62 -0.15 -1.23 16 5 H 0.09 0.87 5.53 -51.93 -0.29 0.58 16 6 C -0.16 -1.37 6.01 37.15 0.22 -1.15 16 7 C 0.08 0.84 3.12 -66.72 -0.21 0.63 16 8 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 9 C -0.14 -1.29 5.64 -24.90 -0.14 -1.43 16 10 C -0.13 -1.36 7.08 -24.59 -0.17 -1.53 16 11 C 0.05 0.65 5.66 -2.30 -0.01 0.64 16 12 N -0.50 -7.24 4.69 -224.78 -1.05 -8.29 16 13 C 0.01 0.20 3.94 -4.98 -0.02 0.18 16 14 C 0.50 10.19 7.70 -10.99 -0.08 10.11 16 15 O -0.54 -13.36 15.67 5.55 0.09 -13.27 16 16 N -0.71 -15.47 5.55 -61.47 -0.34 -15.81 16 17 C 0.24 6.53 4.74 -5.19 -0.02 6.50 16 18 C -0.62 -17.34 9.28 -34.44 -0.32 -17.66 16 19 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 20 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 21 N -0.90 -27.73 13.65 55.43 0.76 -26.98 16 22 Si 1.08 24.75 29.90 -169.99 -5.08 19.66 16 23 H -0.29 -6.18 7.11 56.52 0.40 -5.77 16 24 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.46 7.29 -51.92 -0.38 0.08 16 31 H 0.06 0.45 7.67 -51.93 -0.40 0.06 16 32 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 33 H 0.06 0.45 6.98 -51.93 -0.36 0.09 16 34 H 0.06 0.49 8.01 -51.93 -0.42 0.07 16 35 H 0.06 0.63 4.19 -51.93 -0.22 0.41 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.64 5.66 -51.93 -0.29 0.35 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.04 0.55 6.94 -51.93 -0.36 0.19 16 41 H 0.09 1.44 7.80 -51.93 -0.40 1.04 16 42 H 0.11 1.40 5.29 -51.93 -0.27 1.12 16 43 H 0.07 0.94 4.81 -51.93 -0.25 0.69 16 44 H 0.39 7.31 8.32 -40.82 -0.34 6.97 16 45 H 0.01 0.42 8.01 -51.93 -0.42 0.01 16 46 H 0.02 0.45 8.01 -51.93 -0.42 0.04 16 47 H 0.27 8.52 7.22 -40.82 -0.29 8.22 16 LS Contribution 353.68 15.07 5.33 5.33 Total: -1.00 -32.80 353.68 -9.32 -42.12 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -8.11 Total: 4.38 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -0.91 Total: -7.14 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.64 Total: -51.08 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.80 -9.32 -42.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767904072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.548 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds