Wall clock time and date at job start Tue Mar 31 2020 06:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47485 * 2 1 4 4 C 1.52997 * 109.46957 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47316 * 55.00110 * 4 3 2 6 6 C 1.52995 * 109.47321 * 294.99555 * 4 3 2 7 7 C 1.53000 * 109.46872 * 174.99667 * 4 3 2 8 8 H 1.09005 * 109.88438 * 311.32731 * 7 4 3 9 9 C 1.54322 * 109.89015 * 72.52252 * 7 4 3 10 10 C 1.55145 * 103.01886 * 141.68863 * 9 7 4 11 11 C 1.54909 * 101.65352 * 324.35174 * 10 9 7 12 12 N 1.47443 * 109.89079 * 190.29551 * 7 4 3 13 13 C 1.46901 * 110.99807 * 3.85229 * 12 7 4 14 14 C 1.50694 * 109.47112 * 162.10514 * 13 12 7 15 15 O 1.21285 * 120.00200 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00040 * 179.97438 * 14 13 12 17 17 C 1.46502 * 120.00016 * 179.97438 * 16 14 13 18 18 C 1.50705 * 109.47287 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99406 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00201 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00146 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00006 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46963 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47364 * 119.99586 * 22 20 18 25 25 H 1.48498 * 109.46600 * 239.99354 * 22 20 18 26 26 H 1.09004 * 109.47175 * 300.00740 * 1 2 3 27 27 H 1.08997 * 109.46888 * 60.00419 * 1 2 3 28 28 H 1.09004 * 109.47386 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47175 * 239.99260 * 2 1 3 30 30 H 1.09013 * 109.46688 * 119.99953 * 2 1 3 31 31 H 1.08990 * 109.47440 * 59.99476 * 3 2 1 32 32 H 1.09006 * 109.46493 * 299.99519 * 3 2 1 33 33 H 1.09004 * 109.47007 * 328.07210 * 6 4 3 34 34 H 1.08991 * 109.47289 * 88.06738 * 6 4 3 35 35 H 1.09006 * 109.47451 * 208.07610 * 6 4 3 36 36 H 1.09000 * 110.70793 * 260.07547 * 9 7 4 37 37 H 1.08996 * 110.70175 * 23.31087 * 9 7 4 38 38 H 1.09000 * 110.98679 * 82.43750 * 10 9 7 39 39 H 1.08994 * 110.98815 * 206.21765 * 10 9 7 40 40 H 1.09002 * 110.37113 * 278.23662 * 11 10 9 41 41 H 1.09001 * 110.37340 * 155.90176 * 11 10 9 42 42 H 1.08995 * 109.47233 * 42.10130 * 13 12 7 43 43 H 1.08999 * 109.46961 * 282.09897 * 13 12 7 44 44 H 0.96995 * 119.99895 * 0.02562 * 16 14 13 45 45 H 1.09002 * 109.46856 * 60.00293 * 17 16 14 46 46 H 1.09003 * 109.47350 * 300.00182 * 17 16 14 47 47 H 0.97003 * 119.99725 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4423 0.0006 5 1 3.9337 0.8527 -0.8409 6 6 4.0795 0.8330 1.3083 7 6 4.0802 2.8793 -0.1252 8 1 3.5659 3.3850 -0.9425 9 6 3.8437 3.6380 1.1977 10 6 5.1190 4.5112 1.3325 11 6 6.2035 3.5741 0.7448 12 7 5.5336 2.8757 -0.3730 13 6 6.0399 1.5041 -0.5158 14 6 7.3885 1.5339 -1.1877 15 8 7.8794 2.5934 -1.5157 16 7 8.0491 0.3832 -1.4240 17 6 9.3600 0.4121 -2.0776 18 6 9.8795 -0.9950 -2.2241 19 1 9.2921 -1.8274 -1.8657 20 6 11.1049 -1.2194 -2.8146 21 7 11.8204 -0.2057 -3.2506 22 14 11.7485 -2.9636 -2.9968 23 1 10.7608 -3.9172 -2.4309 24 1 11.9605 -3.2653 -4.4352 25 1 13.0360 -3.0946 -2.2685 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5140 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 1.6767 1.9563 0.8898 32 1 1.6768 1.9562 -0.8901 33 1 3.3779 1.0581 2.1116 34 1 4.1679 -0.2475 1.1955 35 1 5.0554 1.2542 1.5496 36 1 2.9537 4.2636 1.1295 37 1 3.7636 2.9416 2.0323 38 1 5.0311 5.4242 0.7435 39 1 5.3258 4.7416 2.3775 40 1 6.5336 2.8573 1.4967 41 1 7.0488 4.1557 0.3768 42 1 5.3453 0.9216 -1.1210 43 1 6.1348 1.0475 0.4693 44 1 7.6564 -0.4641 -1.1620 45 1 10.0546 0.9952 -1.4730 46 1 9.2647 0.8683 -3.0631 47 1 11.4860 0.7000 -3.1563 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767904072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:28 Heat of formation + Delta-G solvation = -66.394394 kcal Electronic energy + Delta-G solvation = -23138.107781 eV Core-core repulsion = 19933.394589 eV Total energy + Delta-G solvation = -3204.713192 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.62412 -39.95914 -36.80007 -36.33875 -34.46710 -33.49569 -32.83462 -29.48435 -28.91279 -27.69593 -26.89756 -24.68294 -23.90784 -22.60858 -21.68264 -21.30640 -19.83911 -19.27451 -18.10405 -17.22025 -16.72261 -16.55567 -16.45060 -16.02011 -15.60539 -15.45250 -14.93594 -14.90538 -14.46257 -14.28547 -14.05045 -14.02359 -13.47697 -13.35776 -13.11043 -13.09212 -12.89939 -12.59388 -12.46519 -12.32215 -12.22499 -12.04904 -11.91873 -11.87249 -11.49339 -11.41588 -11.31737 -11.13489 -10.96908 -10.78065 -10.68084 -9.94748 -9.17623 -8.81160 -6.56603 1.54775 1.64777 1.72450 1.80613 2.27378 2.55890 3.07101 3.08512 3.56295 3.68147 3.79303 3.92047 4.03917 4.07999 4.17824 4.22301 4.27664 4.35750 4.40797 4.56203 4.58760 4.62948 4.73103 4.78378 4.85607 4.92299 4.94465 5.00111 5.02258 5.02862 5.06978 5.08887 5.18703 5.25818 5.30439 5.33336 5.43245 5.46454 5.52779 5.53701 5.54906 5.95645 6.07812 6.11287 6.30373 6.84364 7.25173 7.45599 8.58027 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.003657 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.883328 B = 7655.549479 C = 8829.383856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.112 4.112 5 H 0.075 0.925 6 C -0.155 4.155 7 C 0.077 3.923 8 H 0.079 0.921 9 C -0.130 4.130 10 C -0.123 4.123 11 C 0.044 3.956 12 N -0.529 5.529 13 C 0.032 3.968 14 C 0.489 3.511 15 O -0.587 6.587 16 N -0.708 5.708 17 C 0.256 3.744 18 C -0.628 4.628 19 H 0.077 0.923 20 C -0.035 4.035 21 N -0.931 5.931 22 Si 1.136 2.864 23 H -0.258 1.258 24 H -0.279 1.279 25 H -0.279 1.279 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.048 0.952 42 H 0.129 0.871 43 H 0.097 0.903 44 H 0.408 0.592 45 H -0.020 1.020 46 H -0.021 1.021 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.397 0.695 12.632 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.141 4.141 4 C -0.131 4.131 5 H 0.093 0.907 6 C -0.212 4.212 7 C -0.031 4.031 8 H 0.097 0.903 9 C -0.168 4.168 10 C -0.161 4.161 11 C -0.084 4.084 12 N -0.253 5.253 13 C -0.099 4.099 14 C 0.276 3.724 15 O -0.468 6.468 16 N -0.359 5.359 17 C 0.132 3.868 18 C -0.665 4.665 19 H 0.095 0.905 20 C -0.233 4.233 21 N -0.567 5.567 22 Si 0.955 3.045 23 H -0.182 1.182 24 H -0.205 1.205 25 H -0.205 1.205 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.146 0.854 43 H 0.114 0.886 44 H 0.243 0.757 45 H -0.002 1.002 46 H -0.003 1.003 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.683 0.836 11.373 25.388 hybrid contribution -0.892 0.713 0.870 1.436 sum -23.576 1.549 12.243 26.610 Atomic orbital electron populations 1.21770 0.95568 1.01730 1.01888 1.21552 0.96063 0.96661 1.02023 1.21594 0.92887 0.97152 1.02487 1.21849 0.97049 0.95243 0.98952 0.90743 1.22235 1.00746 1.01135 0.97072 1.22633 0.86057 0.96263 0.98108 0.90263 1.22946 0.98156 0.98682 0.97011 1.22679 0.94110 0.97887 1.01439 1.23043 0.97681 0.96827 0.90799 1.63204 1.04635 1.13890 1.43595 1.22686 0.92170 0.93146 1.01885 1.21727 0.88278 0.83259 0.79092 1.90613 1.70258 1.31981 1.53905 1.46046 1.20279 1.09088 1.60516 1.18620 0.80954 0.97154 0.90070 1.22480 1.07390 0.92121 1.44535 0.90506 1.27700 0.94019 1.09544 0.92011 1.70849 1.40568 1.00109 1.45165 0.82725 0.75999 0.68483 0.77297 1.18230 1.20503 1.20493 0.92338 0.92943 0.92695 0.92712 0.91558 0.90876 0.92136 0.90917 0.91673 0.93274 0.89257 0.89390 0.91251 0.89215 0.93753 0.93326 0.85353 0.88599 0.75671 1.00247 1.00306 0.93750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.13 -1.52 5.75 30.59 0.18 -1.35 16 3 C -0.10 -1.29 4.40 30.59 0.13 -1.15 16 4 C -0.11 -1.76 1.67 -10.80 -0.02 -1.78 16 5 H 0.07 1.34 5.53 -2.39 -0.01 1.32 16 6 C -0.16 -2.20 6.01 71.98 0.43 -1.77 16 7 C 0.08 1.52 3.12 45.26 0.14 1.66 16 8 H 0.08 1.67 8.09 -2.38 -0.02 1.65 16 9 C -0.13 -2.00 5.64 31.78 0.18 -1.82 16 10 C -0.12 -2.38 7.08 31.98 0.23 -2.15 16 11 C 0.04 1.22 5.66 86.77 0.49 1.71 16 12 N -0.53 -15.05 4.69 -865.06 -4.06 -19.10 16 13 C 0.03 0.90 3.94 85.55 0.34 1.24 16 14 C 0.49 20.61 7.70 87.66 0.67 21.29 16 15 O -0.59 -30.65 15.67 -3.04 -0.05 -30.70 16 16 N -0.71 -31.18 5.55 -466.77 -2.59 -33.77 16 17 C 0.26 14.40 4.74 85.63 0.41 14.80 16 18 C -0.63 -35.17 9.28 25.60 0.24 -34.93 16 19 H 0.08 3.93 7.60 -2.91 -0.02 3.91 16 20 C -0.03 -1.98 5.46 84.65 0.46 -1.52 16 21 N -0.93 -58.85 13.65 21.45 0.29 -58.56 16 22 Si 1.14 48.66 29.90 68.60 2.05 50.71 16 23 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 24 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 25 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 26 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.07 0.77 7.29 -2.38 -0.02 0.75 16 31 H 0.07 0.78 7.67 -2.39 -0.02 0.76 16 32 H 0.06 0.80 8.11 -2.38 -0.02 0.78 16 33 H 0.07 0.83 6.98 -2.38 -0.02 0.82 16 34 H 0.06 0.86 8.01 -2.39 -0.02 0.84 16 35 H 0.05 0.84 4.19 -2.38 -0.01 0.83 16 36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.16 5.66 -2.39 -0.01 1.15 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.04 1.17 6.94 -2.39 -0.02 1.15 16 41 H 0.05 1.70 7.80 -2.39 -0.02 1.68 16 42 H 0.13 3.15 5.29 -2.39 -0.01 3.14 16 43 H 0.10 2.33 4.81 -2.39 -0.01 2.32 16 44 H 0.41 14.89 8.32 -92.71 -0.77 14.11 16 45 H -0.02 -1.27 8.01 -2.39 -0.02 -1.29 16 46 H -0.02 -1.31 8.01 -2.39 -0.02 -1.33 16 47 H 0.25 16.70 7.22 -92.71 -0.67 16.03 16 Total: -1.00 -74.71 353.68 0.52 -74.19 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.28 Total: 23.95 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 4.59 Total: -6.72 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -6.35 Total: -111.43 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.05 Total: -30.70 kcal Atomic # 14 Polarization: 48.66 SS G_CDS: 2.05 Total: 50.71 kcal Total: -74.71 0.52 -74.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767904072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.792 kcal (2) G-P(sol) polarization free energy of solvation -74.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds