Wall clock time and date at job start Tue Mar 31 2020 06:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47231 * 2 1 4 4 C 1.53008 * 109.46731 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47037 * 55.00401 * 4 3 2 6 6 C 1.52992 * 109.47270 * 294.99843 * 4 3 2 7 7 C 1.53000 * 109.46749 * 174.99998 * 4 3 2 8 8 H 1.08998 * 110.36639 * 183.08915 * 7 4 3 9 9 C 1.54384 * 110.41060 * 60.73806 * 7 4 3 10 10 C 1.54261 * 105.05831 * 217.36647 * 9 7 4 11 11 C 1.54376 * 105.06159 * 0.02562 * 10 9 7 12 12 N 1.48551 * 104.59576 * 23.85320 * 11 10 9 13 13 C 1.46899 * 111.00176 * 200.95613 * 12 11 10 14 14 C 1.50695 * 109.47524 * 279.69427 * 13 12 11 15 15 O 1.21287 * 119.99624 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00123 * 179.97438 * 14 13 12 17 17 C 1.46505 * 119.99677 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.46562 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00828 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99577 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00337 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99757 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46991 * 60.00185 * 22 20 18 24 24 H 1.48504 * 109.46738 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47437 * 300.00044 * 22 20 18 26 26 H 1.08997 * 109.46655 * 300.00041 * 1 2 3 27 27 H 1.08996 * 109.47134 * 59.99790 * 1 2 3 28 28 H 1.09000 * 109.47213 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46601 * 239.99893 * 2 1 3 30 30 H 1.09005 * 109.47074 * 120.00398 * 2 1 3 31 31 H 1.08996 * 109.47233 * 300.00149 * 3 2 1 32 32 H 1.08998 * 109.46961 * 60.00764 * 3 2 1 33 33 H 1.09004 * 109.46984 * 66.04675 * 6 4 3 34 34 H 1.08995 * 109.47130 * 186.04392 * 6 4 3 35 35 H 1.08999 * 109.47543 * 306.05258 * 6 4 3 36 36 H 1.09001 * 110.32558 * 336.26598 * 9 7 4 37 37 H 1.09000 * 110.32085 * 98.36980 * 9 7 4 38 38 H 1.08997 * 110.32026 * 118.90117 * 10 9 7 39 39 H 1.09006 * 110.32172 * 241.10159 * 10 9 7 40 40 H 1.09004 * 110.40868 * 142.63142 * 11 10 9 41 41 H 1.08996 * 110.41349 * 264.95139 * 11 10 9 42 42 H 1.09001 * 109.46568 * 39.69505 * 13 12 11 43 43 H 1.09002 * 109.47423 * 159.69127 * 13 12 11 44 44 H 0.96994 * 119.99831 * 0.02562 * 16 14 13 45 45 H 1.09000 * 109.47290 * 300.00530 * 17 16 14 46 46 H 1.09003 * 109.46947 * 60.00536 * 17 16 14 47 47 H 0.96995 * 120.00312 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9331 0.8530 -0.8428 6 6 4.0806 0.8325 1.3063 7 6 4.0801 2.8793 -0.1264 8 1 5.1685 2.8920 -0.1832 9 6 3.5933 3.7297 1.0667 10 6 3.2831 5.1177 0.4693 11 6 3.6079 4.9890 -1.0344 12 7 3.4879 3.5363 -1.3203 13 6 4.2254 3.1768 -2.5388 14 6 3.3983 3.5275 -3.7486 15 8 2.3024 4.0282 -3.6095 16 7 3.8767 3.2858 -4.9852 17 6 3.0728 3.6273 -6.1614 18 6 3.8294 3.2584 -7.4113 19 1 4.8111 2.8144 -7.3372 20 6 3.2683 3.4877 -8.6498 21 7 2.0731 4.0289 -8.7402 22 14 4.2066 3.0311 -10.1992 23 1 4.4865 1.5727 -10.1966 24 1 3.3915 3.3772 -11.3914 25 1 5.4876 3.7809 -10.2413 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 3.8083 -0.2222 1.3459 34 1 5.1652 0.9297 1.3533 35 1 3.6320 1.3554 2.1509 36 1 2.6929 3.2941 1.4997 37 1 4.3763 3.8069 1.8210 38 1 2.2304 5.3634 0.6093 39 1 3.9145 5.8777 0.9298 40 1 2.8894 5.5540 -1.6282 41 1 4.6217 5.3354 -1.2353 42 1 5.1659 3.7269 -2.5697 43 1 4.4306 2.1062 -2.5369 44 1 4.7533 2.8858 -5.0964 45 1 2.1322 3.0774 -6.1307 46 1 2.8678 4.6979 -6.1630 47 1 1.6786 4.1905 -9.6114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767904073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:33 Heat of formation + Delta-G solvation = -59.250735 kcal Electronic energy + Delta-G solvation = -23052.698962 eV Core-core repulsion = 19848.295542 eV Total energy + Delta-G solvation = -3204.403420 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.87366 -38.24934 -35.90507 -34.07651 -32.49467 -32.29606 -31.96908 -27.90201 -27.72774 -26.56042 -25.77834 -22.99840 -22.35771 -21.31616 -20.96228 -19.53734 -18.80116 -17.10370 -16.02120 -15.92904 -15.41798 -15.26904 -14.88191 -14.80951 -14.36501 -14.00057 -13.76177 -13.42877 -13.14943 -13.07564 -12.56937 -12.48550 -12.11000 -12.10463 -11.90009 -11.84462 -11.65596 -11.36113 -11.21036 -11.11538 -10.97098 -10.90353 -10.82190 -10.67812 -10.44679 -10.30834 -10.27442 -10.08572 -9.38071 -8.97624 -8.69717 -8.25105 -7.79910 -6.14082 -4.20966 3.26365 3.31090 3.32584 3.48684 3.75351 4.28621 4.43351 4.52794 4.70122 4.88112 4.95481 5.06230 5.08379 5.21680 5.25171 5.30590 5.33148 5.34928 5.44067 5.46958 5.57416 5.60801 5.66207 5.71239 5.74683 5.83737 5.86623 5.92910 6.00931 6.02651 6.12312 6.13083 6.16328 6.23560 6.29151 6.48815 6.68041 6.97895 7.03387 7.37136 7.51667 7.56670 7.71802 8.00725 8.69948 8.83612 9.20978 9.46131 10.96103 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019440 B = 0.003586 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.966902 B = 7807.138489 C = 8412.710903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.110 4.110 4 C -0.077 4.077 5 H 0.067 0.933 6 C -0.146 4.146 7 C 0.064 3.936 8 H 0.049 0.951 9 C -0.119 4.119 10 C -0.123 4.123 11 C 0.035 3.965 12 N -0.479 5.479 13 C 0.023 3.977 14 C 0.500 3.500 15 O -0.536 6.536 16 N -0.718 5.718 17 C 0.253 3.747 18 C -0.543 4.543 19 H 0.062 0.938 20 C 0.064 3.936 21 N -0.886 5.886 22 Si 0.903 3.097 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.276 1.276 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.038 0.962 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.388 0.612 45 H 0.026 0.974 46 H 0.025 0.975 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.081 -4.616 21.108 22.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.147 4.147 4 C -0.096 4.096 5 H 0.085 0.915 6 C -0.204 4.204 7 C -0.044 4.044 8 H 0.067 0.933 9 C -0.157 4.157 10 C -0.161 4.161 11 C -0.093 4.093 12 N -0.202 5.202 13 C -0.109 4.109 14 C 0.284 3.716 15 O -0.413 6.413 16 N -0.368 5.368 17 C 0.132 3.868 18 C -0.582 4.582 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.730 3.270 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.220 0.780 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.563 -4.338 20.938 21.677 hybrid contribution 1.850 -0.203 -1.005 2.115 sum 5.413 -4.540 19.933 21.148 Atomic orbital electron populations 1.21760 0.96189 1.01061 1.01927 1.21588 0.95711 0.97655 1.01320 1.21617 0.93824 0.95853 1.03395 1.21037 0.96709 0.94165 0.97708 0.91459 1.21869 1.00448 1.00713 0.97354 1.22731 0.96363 0.94625 0.90695 0.93335 1.22382 1.01484 0.95106 0.96757 1.22278 1.02035 0.96845 0.94978 1.23158 1.00212 0.89695 0.96212 1.65067 1.49578 1.05525 1.00071 1.22211 0.95391 1.02296 0.90966 1.20266 0.87302 0.79788 0.84275 1.90649 1.20906 1.43536 1.86236 1.46450 1.21318 1.62518 1.06489 1.19047 0.91064 0.96376 0.80327 1.21203 1.03388 1.42935 0.90652 0.92024 1.24948 0.94973 0.94810 0.99246 1.69964 1.15091 1.42186 1.25065 0.86489 0.79637 0.78940 0.81916 1.20072 1.21067 1.20108 0.93108 0.92413 0.93295 0.92369 0.92607 0.89622 0.92436 0.92485 0.93165 0.92592 0.90444 0.91813 0.91024 0.91760 0.89144 0.94359 0.92279 0.88687 0.77999 0.95633 0.95733 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.13 -1.32 5.69 -26.73 -0.15 -1.47 16 3 C -0.11 -1.26 4.23 -26.73 -0.11 -1.37 16 4 C -0.08 -0.80 2.29 -90.62 -0.21 -1.01 16 5 H 0.07 0.75 7.38 -51.93 -0.38 0.36 16 6 C -0.15 -1.21 8.43 37.15 0.31 -0.89 16 7 C 0.06 0.71 2.09 -66.05 -0.14 0.57 16 8 H 0.05 0.51 8.00 -51.93 -0.42 0.09 16 9 C -0.12 -1.16 5.39 -25.35 -0.14 -1.30 16 10 C -0.12 -1.31 7.00 -25.35 -0.18 -1.49 16 11 C 0.03 0.47 6.07 -2.19 -0.01 0.46 16 12 N -0.48 -6.76 3.53 -223.56 -0.79 -7.55 16 13 C 0.02 0.34 5.31 -4.98 -0.03 0.32 16 14 C 0.50 10.12 7.74 -10.99 -0.09 10.04 16 15 O -0.54 -13.09 15.71 5.55 0.09 -13.01 16 16 N -0.72 -15.32 5.55 -61.47 -0.34 -15.66 16 17 C 0.25 6.80 5.43 -5.19 -0.03 6.77 16 18 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 19 H 0.06 1.57 7.60 -52.49 -0.40 1.18 16 20 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 22 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.06 0.52 6.70 -51.93 -0.35 0.17 16 31 H 0.09 1.28 7.33 -51.93 -0.38 0.90 16 32 H 0.06 0.63 6.33 -51.93 -0.33 0.30 16 33 H 0.06 0.45 6.87 -51.93 -0.36 0.09 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.44 7.27 -51.93 -0.38 0.06 16 36 H 0.08 0.75 5.60 -51.93 -0.29 0.46 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 1.46 7.65 -51.93 -0.40 1.06 16 41 H 0.04 0.48 7.68 -51.93 -0.40 0.09 16 42 H 0.06 0.77 7.64 -51.93 -0.40 0.37 16 43 H 0.09 1.24 7.15 -51.93 -0.37 0.87 16 44 H 0.39 7.08 8.32 -40.82 -0.34 6.74 16 45 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 364.49 15.07 5.49 5.49 Total: -1.00 -31.56 364.49 -9.19 -40.75 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -8.55 Total: 3.76 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -0.81 Total: -4.13 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.39 Total: -48.83 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.09 Total: -13.01 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.56 -9.19 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767904073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.501 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds