Wall clock time and date at job start Tue Mar 31 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47231 * 2 1 4 4 C 1.53008 * 109.46731 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47037 * 55.00401 * 4 3 2 6 6 C 1.52992 * 109.47270 * 294.99843 * 4 3 2 7 7 C 1.53000 * 109.46749 * 174.99998 * 4 3 2 8 8 H 1.08998 * 110.36639 * 183.08915 * 7 4 3 9 9 C 1.54384 * 110.41060 * 60.73806 * 7 4 3 10 10 C 1.54261 * 105.05831 * 217.36647 * 9 7 4 11 11 C 1.54376 * 105.06159 * 0.02562 * 10 9 7 12 12 N 1.48551 * 104.59576 * 23.85320 * 11 10 9 13 13 C 1.46899 * 111.00176 * 200.95613 * 12 11 10 14 14 C 1.50695 * 109.47524 * 279.69427 * 13 12 11 15 15 O 1.21287 * 119.99624 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00123 * 179.97438 * 14 13 12 17 17 C 1.46505 * 119.99677 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.46562 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00828 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99577 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00337 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99757 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46991 * 60.00185 * 22 20 18 24 24 H 1.48504 * 109.46738 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47437 * 300.00044 * 22 20 18 26 26 H 1.08997 * 109.46655 * 300.00041 * 1 2 3 27 27 H 1.08996 * 109.47134 * 59.99790 * 1 2 3 28 28 H 1.09000 * 109.47213 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46601 * 239.99893 * 2 1 3 30 30 H 1.09005 * 109.47074 * 120.00398 * 2 1 3 31 31 H 1.08996 * 109.47233 * 300.00149 * 3 2 1 32 32 H 1.08998 * 109.46961 * 60.00764 * 3 2 1 33 33 H 1.09004 * 109.46984 * 66.04675 * 6 4 3 34 34 H 1.08995 * 109.47130 * 186.04392 * 6 4 3 35 35 H 1.08999 * 109.47543 * 306.05258 * 6 4 3 36 36 H 1.09001 * 110.32558 * 336.26598 * 9 7 4 37 37 H 1.09000 * 110.32085 * 98.36980 * 9 7 4 38 38 H 1.08997 * 110.32026 * 118.90117 * 10 9 7 39 39 H 1.09006 * 110.32172 * 241.10159 * 10 9 7 40 40 H 1.09004 * 110.40868 * 142.63142 * 11 10 9 41 41 H 1.08996 * 110.41349 * 264.95139 * 11 10 9 42 42 H 1.09001 * 109.46568 * 39.69505 * 13 12 11 43 43 H 1.09002 * 109.47423 * 159.69127 * 13 12 11 44 44 H 0.96994 * 119.99831 * 0.02562 * 16 14 13 45 45 H 1.09000 * 109.47290 * 300.00530 * 17 16 14 46 46 H 1.09003 * 109.46947 * 60.00536 * 17 16 14 47 47 H 0.96995 * 120.00312 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9331 0.8530 -0.8428 6 6 4.0806 0.8325 1.3063 7 6 4.0801 2.8793 -0.1264 8 1 5.1685 2.8920 -0.1832 9 6 3.5933 3.7297 1.0667 10 6 3.2831 5.1177 0.4693 11 6 3.6079 4.9890 -1.0344 12 7 3.4879 3.5363 -1.3203 13 6 4.2254 3.1768 -2.5388 14 6 3.3983 3.5275 -3.7486 15 8 2.3024 4.0282 -3.6095 16 7 3.8767 3.2858 -4.9852 17 6 3.0728 3.6273 -6.1614 18 6 3.8294 3.2584 -7.4113 19 1 4.8111 2.8144 -7.3372 20 6 3.2683 3.4877 -8.6498 21 7 2.0731 4.0289 -8.7402 22 14 4.2066 3.0311 -10.1992 23 1 4.4865 1.5727 -10.1966 24 1 3.3915 3.3772 -11.3914 25 1 5.4876 3.7809 -10.2413 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 3.8083 -0.2222 1.3459 34 1 5.1652 0.9297 1.3533 35 1 3.6320 1.3554 2.1509 36 1 2.6929 3.2941 1.4997 37 1 4.3763 3.8069 1.8210 38 1 2.2304 5.3634 0.6093 39 1 3.9145 5.8777 0.9298 40 1 2.8894 5.5540 -1.6282 41 1 4.6217 5.3354 -1.2353 42 1 5.1659 3.7269 -2.5697 43 1 4.4306 2.1062 -2.5369 44 1 4.7533 2.8858 -5.0964 45 1 2.1322 3.0774 -6.1307 46 1 2.8678 4.6979 -6.1630 47 1 1.6786 4.1905 -9.6114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767904073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:32 Heat of formation + Delta-G solvation = -79.921625 kcal Electronic energy + Delta-G solvation = -23053.595319 eV Core-core repulsion = 19848.295542 eV Total energy + Delta-G solvation = -3205.299777 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.02952 -39.76854 -36.84376 -36.06384 -34.34443 -33.42544 -32.97735 -29.73695 -28.60595 -27.45093 -27.21776 -24.53615 -23.66707 -22.19748 -22.07101 -21.23628 -19.66963 -18.92796 -17.52002 -17.28997 -16.75686 -16.50272 -16.43259 -16.03567 -15.70695 -15.29735 -14.91773 -14.64242 -14.27204 -14.18988 -14.00029 -13.85164 -13.63455 -13.26220 -13.08171 -12.87607 -12.82669 -12.67595 -12.64757 -12.26502 -12.23920 -12.12976 -12.12489 -11.77554 -11.54515 -11.51331 -11.31837 -11.12310 -10.94441 -10.79318 -10.65844 -9.79788 -9.32194 -8.29335 -6.46525 1.42161 1.46639 1.54848 1.83748 2.28466 2.48443 3.05175 3.15343 3.63322 3.75861 4.02110 4.03811 4.06665 4.18708 4.26268 4.31084 4.36558 4.44370 4.49416 4.54431 4.64972 4.69521 4.72941 4.88925 4.95848 5.02388 5.06024 5.10887 5.11173 5.13191 5.22993 5.23603 5.26139 5.28780 5.32265 5.41088 5.43059 5.49284 5.65494 5.69989 5.72679 5.84957 5.96751 6.09007 6.64743 6.97732 7.23428 7.56472 8.82794 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019440 B = 0.003586 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.966902 B = 7807.138489 C = 8412.710903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.104 4.104 4 C -0.075 4.075 5 H 0.059 0.941 6 C -0.140 4.140 7 C 0.066 3.934 8 H 0.065 0.935 9 C -0.113 4.113 10 C -0.118 4.118 11 C 0.032 3.968 12 N -0.505 5.505 13 C 0.039 3.961 14 C 0.495 3.505 15 O -0.585 6.585 16 N -0.712 5.712 17 C 0.270 3.730 18 C -0.557 4.557 19 H 0.084 0.916 20 C 0.003 3.997 21 N -0.932 5.932 22 Si 0.986 3.014 23 H -0.261 1.261 24 H -0.285 1.285 25 H -0.261 1.261 26 H 0.059 0.941 27 H 0.034 0.966 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.407 0.593 45 H -0.017 1.017 46 H -0.016 1.016 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.081 -6.082 22.684 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.142 4.142 4 C -0.094 4.094 5 H 0.077 0.923 6 C -0.197 4.197 7 C -0.042 4.042 8 H 0.083 0.917 9 C -0.151 4.151 10 C -0.156 4.156 11 C -0.096 4.096 12 N -0.229 5.229 13 C -0.093 4.093 14 C 0.282 3.718 15 O -0.465 6.465 16 N -0.364 5.364 17 C 0.147 3.853 18 C -0.595 4.595 19 H 0.102 0.898 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.808 3.192 23 H -0.186 1.186 24 H -0.211 1.211 25 H -0.186 1.186 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.136 0.864 44 H 0.242 0.758 45 H 0.001 0.999 46 H 0.002 0.998 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.608 -5.824 22.555 24.213 hybrid contribution 0.828 0.286 -1.447 1.691 sum 7.436 -5.538 21.108 23.054 Atomic orbital electron populations 1.21771 0.96452 1.01589 1.01218 1.21575 0.95513 0.97091 1.01806 1.21515 0.95067 0.96017 1.01563 1.21038 0.95504 0.93967 0.98922 0.92251 1.21813 1.01173 1.00821 0.95914 1.22839 0.97135 0.94738 0.89477 0.91665 1.22389 1.02318 0.93764 0.96632 1.22253 1.01932 0.98413 0.93009 1.23115 0.99638 0.89178 0.97673 1.64984 1.50775 1.06136 1.00975 1.22081 0.94806 1.03911 0.88466 1.21377 0.87124 0.78023 0.85280 1.90628 1.23443 1.45443 1.86961 1.46197 1.21642 1.62878 1.05648 1.18466 0.90519 0.93216 0.83083 1.21600 1.04226 1.42932 0.90751 0.89792 1.26091 0.95822 0.94285 1.03413 1.70138 1.17254 1.43480 1.26172 0.85198 0.78209 0.79271 0.76481 1.18594 1.21069 1.18581 0.92239 0.94715 0.92147 0.93375 0.90459 0.93821 0.91857 0.92012 0.91951 0.91811 0.90531 0.89155 0.92070 0.89558 0.93211 0.93205 0.89565 0.86382 0.75803 0.99898 0.99818 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.91 71.98 0.71 -2.47 16 2 C -0.12 -2.47 5.69 30.59 0.17 -2.29 16 3 C -0.10 -2.33 4.23 30.60 0.13 -2.20 16 4 C -0.08 -1.40 2.29 -10.79 -0.02 -1.42 16 5 H 0.06 1.20 7.38 -2.39 -0.02 1.18 16 6 C -0.14 -1.80 8.43 71.98 0.61 -1.20 16 7 C 0.07 1.28 2.09 45.06 0.09 1.37 16 8 H 0.07 1.10 8.00 -2.39 -0.02 1.08 16 9 C -0.11 -1.88 5.39 31.49 0.17 -1.71 16 10 C -0.12 -2.35 7.00 31.49 0.22 -2.13 16 11 C 0.03 0.86 6.07 86.45 0.52 1.38 16 12 N -0.50 -14.02 3.53 -861.20 -3.04 -17.06 16 13 C 0.04 1.11 5.31 85.56 0.45 1.56 16 14 C 0.50 20.71 7.74 87.65 0.68 21.39 16 15 O -0.58 -30.49 15.71 -3.05 -0.05 -30.54 16 16 N -0.71 -31.16 5.55 -466.77 -2.59 -33.75 16 17 C 0.27 15.32 5.43 85.63 0.46 15.78 16 18 C -0.56 -30.93 9.28 25.60 0.24 -30.69 16 19 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 20 C 0.00 0.19 5.46 84.66 0.46 0.66 16 21 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 22 Si 0.99 42.77 29.54 68.60 2.03 44.80 16 23 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 24 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 25 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.08 1.24 6.70 -2.38 -0.02 1.22 16 31 H 0.04 1.35 7.33 -2.39 -0.02 1.34 16 32 H 0.06 1.32 6.33 -2.39 -0.02 1.30 16 33 H 0.06 0.76 6.87 -2.39 -0.02 0.74 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.74 7.27 -2.39 -0.02 0.73 16 36 H 0.08 1.30 5.60 -2.39 -0.01 1.29 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.05 1.72 7.65 -2.39 -0.02 1.70 16 41 H 0.05 1.20 7.68 -2.39 -0.02 1.18 16 42 H 0.09 2.03 7.64 -2.39 -0.02 2.01 16 43 H 0.12 2.83 7.15 -2.39 -0.02 2.82 16 44 H 0.41 14.57 8.32 -92.71 -0.77 13.79 16 45 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 46 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 47 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -73.36 364.49 1.70 -71.67 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.16 Total: 23.88 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 4.91 Total: -1.97 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -5.34 Total: -107.83 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.05 Total: -30.54 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -73.36 1.70 -71.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767904073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.255 kcal (2) G-P(sol) polarization free energy of solvation -73.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds