Wall clock time and date at job start Tue Mar 31 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47292 * 2 1 4 4 C 1.52998 * 109.47292 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46846 * 54.99635 * 4 3 2 6 6 C 1.53004 * 109.47127 * 295.00441 * 4 3 2 7 7 C 1.53006 * 109.46943 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47214 * 59.99630 * 7 6 4 9 9 C 1.53004 * 109.47467 * 300.00049 * 8 7 6 10 10 C 1.52999 * 109.47232 * 174.99947 * 4 3 2 11 11 H 1.09000 * 109.46833 * 60.00370 * 10 4 3 12 12 N 1.46901 * 109.47214 * 300.00001 * 10 4 3 13 13 C 1.46900 * 110.99988 * 154.99691 * 12 10 4 14 14 C 1.50692 * 109.47199 * 180.02562 * 13 12 10 15 15 O 1.21282 * 120.00217 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00138 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00075 * 180.02562 * 16 14 13 18 18 C 1.50708 * 109.47141 * 179.97438 * 17 16 14 19 19 H 1.07991 * 119.99789 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00008 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00089 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99938 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99556 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99737 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99730 * 22 20 18 26 26 H 1.09006 * 109.47121 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46946 * 299.99748 * 1 2 3 28 28 H 1.08998 * 109.47413 * 60.00095 * 1 2 3 29 29 H 1.09005 * 109.46902 * 239.99500 * 2 1 3 30 30 H 1.09007 * 109.47274 * 120.00483 * 2 1 3 31 31 H 1.09001 * 109.46919 * 60.00235 * 3 2 1 32 32 H 1.08998 * 109.46814 * 300.00271 * 3 2 1 33 33 H 1.08991 * 109.46675 * 299.99428 * 6 4 3 34 34 H 1.08999 * 109.47346 * 60.00238 * 6 4 3 35 35 H 1.08998 * 109.47048 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47111 * 299.99934 * 7 6 4 37 37 H 1.08999 * 109.47086 * 59.99648 * 8 7 6 38 38 H 1.08992 * 109.47478 * 179.97438 * 8 7 6 39 39 H 1.09005 * 109.46600 * 300.00306 * 9 8 7 40 40 H 1.08993 * 109.47653 * 180.02562 * 9 8 7 41 41 H 1.00901 * 110.99585 * 31.04634 * 12 10 4 42 42 H 1.09007 * 109.46678 * 60.00082 * 13 12 10 43 43 H 1.09000 * 109.47233 * 300.00574 * 13 12 10 44 44 H 0.97000 * 120.00165 * 359.97438 * 16 14 13 45 45 H 1.08994 * 109.47995 * 59.99644 * 17 16 14 46 46 H 1.09000 * 109.47072 * 299.99601 * 17 16 14 47 47 H 0.96997 * 119.99848 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8528 -0.8409 6 6 4.0795 0.8329 1.3083 7 6 5.6095 0.8323 1.3086 8 6 6.1201 2.2691 1.1826 9 6 5.6106 2.8787 -0.1250 10 6 4.0801 2.8794 -0.1251 11 1 3.7164 3.4689 0.7165 12 7 3.5910 3.4646 -1.3806 13 6 3.5281 4.9294 -1.2894 14 6 3.0226 5.4926 -2.5925 15 8 2.7419 4.7472 -3.5071 16 7 2.8825 6.8248 -2.7417 17 6 2.3906 7.3723 -4.0083 18 6 2.3263 8.8751 -3.9148 19 1 2.6226 9.3725 -3.0032 20 6 1.8901 9.6149 -4.9934 21 7 1.8344 10.9263 -4.9119 22 14 1.3782 8.7545 -6.5704 23 1 2.5575 8.6118 -7.4617 24 1 0.3340 9.5575 -7.2560 25 1 0.8363 7.4101 -6.2475 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9562 -0.8900 33 1 3.7158 1.4225 2.1498 34 1 3.7161 -0.1909 1.3978 35 1 5.9725 0.3985 2.2404 36 1 5.9728 0.2426 0.4670 37 1 5.7568 2.8589 2.0241 38 1 7.2100 2.2688 1.1833 39 1 5.9739 2.2887 -0.9666 40 1 5.9747 3.9020 -0.2151 41 1 2.6934 3.0792 -1.6336 42 1 4.5235 5.3236 -1.0844 43 1 2.8514 5.2146 -0.4838 44 1 3.1067 7.4210 -2.0101 45 1 1.3950 6.9784 -4.2123 46 1 3.0665 7.0867 -4.8144 47 1 1.5272 11.4467 -5.6707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775681869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:41 Heat of formation + Delta-G solvation = -75.140733 kcal Electronic energy + Delta-G solvation = -22532.246851 eV Core-core repulsion = 19327.154389 eV Total energy + Delta-G solvation = -3205.092462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.79496 -38.69819 -35.15449 -34.86975 -34.15231 -32.34284 -31.06365 -29.98523 -28.14626 -26.33789 -25.34986 -22.89776 -21.94456 -21.37337 -20.72601 -20.08243 -19.70531 -17.38325 -16.34345 -15.74864 -15.53815 -15.46197 -15.16531 -14.61880 -14.45937 -14.27926 -14.13961 -13.77966 -13.39501 -13.07665 -12.96300 -12.73367 -12.57314 -12.39708 -12.18343 -12.00100 -11.81459 -11.58325 -11.36608 -11.29788 -11.09432 -11.01450 -10.85337 -10.75400 -10.63138 -10.30422 -10.04627 -9.96469 -9.48910 -9.15470 -8.77188 -8.37415 -8.11011 -6.21141 -4.23298 3.25487 3.29167 3.34068 3.42872 3.72917 4.31465 4.34493 4.39665 4.50563 4.61264 4.77153 4.93136 4.98761 5.03236 5.13142 5.14373 5.24005 5.30515 5.32338 5.35616 5.41274 5.44124 5.47587 5.56407 5.58845 5.64769 5.66896 5.80404 5.85119 5.86061 5.95443 5.98281 6.05126 6.10946 6.13965 6.16309 6.31181 6.80007 7.01675 7.08682 7.25750 7.39631 7.44314 8.15477 8.53606 8.76164 8.97168 9.39306 10.90859 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021388 B = 0.003210 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.845150 B = 8721.963853 C = 9618.033869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.123 4.123 4 C -0.088 4.088 5 H 0.080 0.920 6 C -0.112 4.112 7 C -0.120 4.120 8 C -0.119 4.119 9 C -0.109 4.109 10 C 0.094 3.906 11 H 0.043 0.957 12 N -0.670 5.670 13 C 0.041 3.959 14 C 0.498 3.502 15 O -0.546 6.546 16 N -0.708 5.708 17 C 0.221 3.779 18 C -0.543 4.543 19 H 0.079 0.921 20 C 0.077 3.923 21 N -0.893 5.893 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.261 1.261 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.351 0.649 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.396 0.604 45 H 0.024 0.976 46 H 0.020 0.980 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 -20.929 15.359 26.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.160 4.160 4 C -0.107 4.107 5 H 0.098 0.902 6 C -0.149 4.149 7 C -0.158 4.158 8 C -0.157 4.157 9 C -0.147 4.147 10 C -0.016 4.016 11 H 0.061 0.939 12 N -0.306 5.306 13 C -0.092 4.092 14 C 0.283 3.717 15 O -0.424 6.424 16 N -0.357 5.357 17 C 0.099 3.901 18 C -0.581 4.581 19 H 0.097 0.903 20 C -0.127 4.127 21 N -0.530 5.530 22 Si 0.704 3.296 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.185 1.185 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.173 0.827 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.229 0.771 45 H 0.042 0.958 46 H 0.038 0.962 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.545 -21.267 14.260 26.005 hybrid contribution -0.922 0.321 0.052 0.978 sum 3.623 -20.947 14.311 25.626 Atomic orbital electron populations 1.21793 0.96003 1.01452 1.01947 1.21538 0.95717 0.96716 1.02000 1.21751 0.95004 0.97234 1.02059 1.21320 0.94798 0.95900 0.98679 0.90169 1.21600 0.95466 1.00807 0.97075 1.21549 0.95642 0.97009 1.01566 1.21541 1.00213 0.96061 0.97914 1.21555 0.94498 1.01172 0.97451 1.21551 0.95484 0.94243 0.90292 0.93948 1.60195 1.35137 1.03343 1.31876 1.21861 1.02111 0.89767 0.95443 1.20442 0.78861 0.83056 0.89368 1.90650 1.50843 1.58664 1.42289 1.46169 1.65508 1.05821 1.18225 1.19469 0.94420 0.94485 0.81714 1.21102 1.46307 0.88642 1.02065 0.90279 1.24801 0.94463 0.94722 0.98675 1.69882 1.46415 1.05003 1.31747 0.86807 0.79076 0.80350 0.83395 1.19820 1.20918 1.18517 0.92925 0.92894 0.92558 0.91932 0.91949 0.92100 0.91560 0.92122 0.91649 0.92261 0.91902 0.92238 0.91977 0.91154 0.92030 0.82650 0.88508 0.92815 0.77105 0.95815 0.96166 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -0.97 5.69 -26.73 -0.15 -1.12 16 3 C -0.12 -1.09 4.55 -26.73 -0.12 -1.21 16 4 C -0.09 -0.79 1.85 -90.62 -0.17 -0.96 16 5 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 6 C -0.11 -0.83 4.96 -26.73 -0.13 -0.97 16 7 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 8 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 9 C -0.11 -1.08 5.43 -26.70 -0.14 -1.22 16 10 C 0.09 0.97 1.98 -67.68 -0.13 0.84 16 11 H 0.04 0.44 7.80 -51.93 -0.40 0.03 16 12 N -0.67 -8.97 5.93 -107.96 -0.64 -9.61 16 13 C 0.04 0.57 5.97 -4.98 -0.03 0.54 16 14 C 0.50 9.56 7.87 -10.99 -0.09 9.47 16 15 O -0.55 -12.60 16.20 5.56 0.09 -12.51 16 16 N -0.71 -14.43 5.55 -61.47 -0.34 -14.77 16 17 C 0.22 5.51 4.50 -5.19 -0.02 5.49 16 18 C -0.54 -15.02 9.83 -34.44 -0.34 -15.36 16 19 H 0.08 2.27 7.84 -52.49 -0.41 1.85 16 20 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 21 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 22 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.69 6.04 -51.93 -0.31 0.37 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.64 7.46 -51.93 -0.39 0.25 16 41 H 0.35 4.90 5.80 -39.29 -0.23 4.67 16 42 H 0.10 1.21 7.44 -51.93 -0.39 0.83 16 43 H 0.05 0.65 8.06 -51.93 -0.42 0.23 16 44 H 0.40 7.05 8.32 -40.82 -0.34 6.71 16 45 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 46 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 47 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 362.36 15.07 5.46 5.46 Total: -1.00 -31.46 362.36 -9.28 -40.74 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -8.58 Total: 5.00 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -1.38 Total: -5.40 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.21 Total: -50.28 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.46 -9.28 -40.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775681869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.404 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds