Wall clock time and date at job start Tue Mar 31 2020 05:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47255 * 2 1 4 4 C 1.53000 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47157 * 54.99518 * 4 3 2 6 6 C 1.53005 * 109.47078 * 295.00023 * 4 3 2 7 7 C 1.52993 * 109.47326 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47330 * 60.00127 * 7 6 4 9 9 C 1.53005 * 109.46812 * 300.00188 * 8 7 6 10 10 C 1.52993 * 109.47326 * 59.99810 * 9 8 7 11 11 H 1.09004 * 109.47538 * 179.97438 * 10 9 8 12 12 N 1.46904 * 109.47308 * 59.99994 * 10 9 8 13 13 C 1.46899 * 111.00029 * 84.99846 * 12 10 9 14 14 C 1.50703 * 109.47107 * 180.02562 * 13 12 10 15 15 O 1.21278 * 119.99985 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99944 * 180.02562 * 14 13 12 17 17 C 1.46499 * 119.99872 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.46992 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47294 * 60.00559 * 22 20 18 24 24 H 1.48503 * 109.46954 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47431 * 300.00157 * 22 20 18 26 26 H 1.08997 * 109.47091 * 300.00192 * 1 2 3 27 27 H 1.09009 * 109.46664 * 59.99743 * 1 2 3 28 28 H 1.08996 * 109.47516 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47410 * 240.00152 * 2 1 3 30 30 H 1.09003 * 109.47058 * 119.99680 * 2 1 3 31 31 H 1.08997 * 109.47228 * 59.99891 * 3 2 1 32 32 H 1.08996 * 109.47435 * 300.00077 * 3 2 1 33 33 H 1.09008 * 109.47129 * 59.99619 * 6 4 3 34 34 H 1.09002 * 109.47293 * 300.00021 * 6 4 3 35 35 H 1.08999 * 109.47404 * 299.99953 * 7 6 4 36 36 H 1.09004 * 109.47538 * 180.02562 * 7 6 4 37 37 H 1.08991 * 109.47418 * 180.02562 * 8 7 6 38 38 H 1.08999 * 109.47019 * 59.99590 * 8 7 6 39 39 H 1.09002 * 109.47293 * 299.99736 * 9 8 7 40 40 H 1.09001 * 109.47042 * 179.97438 * 9 8 7 41 41 H 1.00905 * 110.99940 * 208.95626 * 12 10 9 42 42 H 1.09002 * 109.47043 * 60.00207 * 13 12 10 43 43 H 1.09001 * 109.47354 * 300.00146 * 13 12 10 44 44 H 0.97000 * 119.99708 * 359.97438 * 16 14 13 45 45 H 1.09002 * 109.47391 * 59.99686 * 17 16 14 46 46 H 1.09001 * 109.46813 * 299.99742 * 17 16 14 47 47 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0806 0.8327 1.3064 7 6 5.6105 0.8320 1.3056 8 6 6.1211 2.2688 1.1796 9 6 5.6105 2.8787 -0.1275 10 6 4.0806 2.8793 -0.1266 11 1 3.7168 3.3141 -1.0576 12 7 3.5918 3.6739 1.0082 13 6 3.5294 5.1006 0.6638 14 6 3.0255 5.8820 1.8498 15 8 2.7463 5.3071 2.8805 16 7 2.8851 7.2198 1.7650 17 6 2.3957 7.9795 2.9181 18 6 2.3316 9.4431 2.5648 19 1 2.6255 9.7742 1.5797 20 6 1.8967 10.3593 3.4988 21 7 1.5383 9.9560 4.6981 22 14 1.8165 12.1734 3.0606 23 1 0.8935 12.3652 1.9132 24 1 1.3206 12.9435 4.2295 25 1 3.1722 12.6538 2.6910 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9564 -0.8899 33 1 3.7172 -0.1912 1.3960 34 1 3.7176 1.4220 2.1485 35 1 5.9732 0.2425 0.4636 36 1 5.9743 0.3972 2.2366 37 1 7.2110 2.2684 1.1785 38 1 5.7584 2.8584 2.0216 39 1 5.9731 2.2891 -0.9695 40 1 5.9739 3.9024 -0.2170 41 1 2.6942 3.3386 1.3245 42 1 2.8526 5.2417 -0.1789 43 1 4.5248 5.4530 0.3934 44 1 3.1087 7.6796 0.9407 45 1 3.0734 7.8387 3.7601 46 1 1.4007 7.6269 3.1896 47 1 1.2326 10.6007 5.3554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775681874.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:44 Heat of formation + Delta-G solvation = -77.009643 kcal Electronic energy + Delta-G solvation = -22743.963488 eV Core-core repulsion = 19538.789984 eV Total energy + Delta-G solvation = -3205.173504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.80334 -38.49661 -35.12864 -34.37797 -33.92176 -32.29397 -30.95707 -29.91945 -27.68271 -26.18799 -25.15491 -22.88395 -22.21608 -21.87632 -20.65549 -19.63460 -18.97013 -17.25235 -16.06160 -15.77783 -15.61416 -15.25660 -15.05948 -14.61859 -14.30127 -14.10678 -14.04236 -13.41948 -13.37207 -12.89745 -12.83770 -12.67993 -12.29547 -12.14109 -11.97442 -11.89823 -11.54942 -11.47212 -11.35075 -11.18755 -10.98639 -10.93691 -10.85046 -10.73875 -10.45134 -10.30783 -10.09504 -9.86851 -9.39782 -8.97484 -8.71606 -8.24291 -7.83462 -6.15404 -4.22384 3.25684 3.30443 3.31935 3.43564 3.88153 4.32468 4.45949 4.53148 4.59156 4.74865 4.93949 4.98710 5.07965 5.20444 5.21527 5.29714 5.34464 5.36580 5.46198 5.51116 5.53434 5.56309 5.61539 5.66669 5.68563 5.74841 5.78647 5.87173 5.92560 5.96340 6.07757 6.15543 6.20369 6.27000 6.32603 6.36518 6.60843 7.05721 7.34547 7.47327 7.51805 7.54581 7.69373 7.99003 8.66595 8.80672 9.15510 9.44419 10.94785 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021914 B = 0.003171 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.434144 B = 8827.845564 C = 9496.650110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.123 4.123 4 C -0.086 4.086 5 H 0.072 0.928 6 C -0.111 4.111 7 C -0.114 4.114 8 C -0.113 4.113 9 C -0.106 4.106 10 C 0.092 3.908 11 H 0.041 0.959 12 N -0.662 5.662 13 C 0.040 3.960 14 C 0.496 3.504 15 O -0.544 6.544 16 N -0.716 5.716 17 C 0.251 3.749 18 C -0.544 4.544 19 H 0.062 0.938 20 C 0.064 3.936 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.350 0.650 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.389 0.611 45 H 0.026 0.974 46 H 0.025 0.975 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.707 -18.715 -12.859 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.161 4.161 4 C -0.104 4.104 5 H 0.090 0.910 6 C -0.149 4.149 7 C -0.152 4.152 8 C -0.151 4.151 9 C -0.144 4.144 10 C -0.018 4.018 11 H 0.059 0.941 12 N -0.298 5.298 13 C -0.093 4.093 14 C 0.281 3.719 15 O -0.422 6.422 16 N -0.365 5.365 17 C 0.131 3.869 18 C -0.582 4.582 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.173 0.827 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.221 0.779 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.022 -18.992 -11.600 22.813 hybrid contribution -0.729 1.384 -1.210 1.978 sum 4.293 -17.607 -12.810 22.193 Atomic orbital electron populations 1.21793 0.96027 1.01399 1.01970 1.21535 0.95679 0.96766 1.01949 1.21749 0.95066 0.97158 1.02123 1.21309 0.94721 0.95484 0.98930 0.90960 1.21562 0.95464 1.00082 0.97753 1.21468 0.95776 0.97057 1.00859 1.21414 0.98733 0.95984 0.98958 1.21512 0.94457 1.00642 0.97773 1.21542 0.95601 0.92809 0.91882 0.94133 1.60191 1.34933 1.00514 1.34126 1.21888 1.01851 0.89862 0.95714 1.20387 0.79102 0.83177 0.89284 1.90656 1.50725 1.69664 1.31146 1.46450 1.65609 1.06364 1.18046 1.19067 0.94921 0.89572 0.83372 1.21200 1.46201 0.91372 0.99458 0.91993 1.24953 0.94830 0.99485 0.94751 1.69966 1.42934 1.35002 1.04391 0.86478 0.78510 0.83995 0.77933 1.20087 1.21065 1.20065 0.92518 0.92926 0.92968 0.92343 0.91637 0.91404 0.92231 0.92524 0.90584 0.92979 0.92463 0.93184 0.90034 0.92442 0.92208 0.82740 0.93139 0.88791 0.77860 0.95581 0.95678 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.00 5.69 -26.73 -0.15 -1.15 16 3 C -0.12 -1.14 4.33 -26.73 -0.12 -1.25 16 4 C -0.09 -0.80 1.96 -90.62 -0.18 -0.97 16 5 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 6 C -0.11 -1.10 4.80 -26.73 -0.13 -1.23 16 7 C -0.11 -1.11 5.92 -26.74 -0.16 -1.26 16 8 C -0.11 -1.23 5.77 -26.73 -0.15 -1.39 16 9 C -0.11 -1.08 5.53 -26.73 -0.15 -1.23 16 10 C 0.09 0.97 2.30 -67.71 -0.16 0.81 16 11 H 0.04 0.42 7.80 -51.93 -0.40 0.01 16 12 N -0.66 -8.89 4.45 -107.99 -0.48 -9.37 16 13 C 0.04 0.56 5.96 -4.98 -0.03 0.53 16 14 C 0.50 9.89 7.87 -10.98 -0.09 9.80 16 15 O -0.54 -13.11 16.20 5.56 0.09 -13.02 16 16 N -0.72 -15.11 5.55 -61.47 -0.34 -15.45 16 17 C 0.25 6.73 5.43 -5.19 -0.03 6.70 16 18 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 19 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 22 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 31 H 0.07 0.72 6.42 -51.93 -0.33 0.39 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.51 6.57 -51.92 -0.34 0.16 16 34 H 0.08 0.92 7.48 -51.93 -0.39 0.53 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 1.10 7.60 -51.93 -0.39 0.71 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 41 H 0.35 5.00 5.79 -39.29 -0.23 4.77 16 42 H 0.05 0.63 8.05 -51.93 -0.42 0.21 16 43 H 0.09 1.21 7.43 -51.93 -0.39 0.83 16 44 H 0.39 7.02 8.32 -40.82 -0.34 6.68 16 45 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -31.03 363.65 -9.49 -40.51 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -8.57 Total: 6.52 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -1.38 Total: -5.03 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.09 Total: -50.37 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.02 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.03 -9.49 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775681874.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.497 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds