Wall clock time and date at job start Tue Mar 31 2020 05:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47192 * 305.00392 * 4 3 2 6 6 C 1.53000 * 109.47060 * 65.00062 * 4 3 2 7 7 C 1.53002 * 109.47379 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.46964 * 300.00319 * 7 6 4 9 9 C 1.53000 * 109.47333 * 59.99652 * 8 7 6 10 10 C 1.53001 * 109.47049 * 185.00237 * 4 3 2 11 11 H 1.08998 * 109.47252 * 60.00195 * 10 4 3 12 12 N 1.46896 * 109.46868 * 299.99935 * 10 4 3 13 13 C 1.46902 * 110.99922 * 155.00171 * 12 10 4 14 14 C 1.50697 * 109.47400 * 180.02562 * 13 12 10 15 15 O 1.21281 * 120.00132 * 359.97438 * 14 13 12 16 16 N 1.34782 * 120.00256 * 179.97438 * 14 13 12 17 17 C 1.46491 * 120.00193 * 179.97438 * 16 14 13 18 18 C 1.50704 * 109.47396 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99528 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00054 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00131 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99705 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47544 * 89.99846 * 22 20 18 24 24 H 1.48500 * 109.47175 * 210.00210 * 22 20 18 25 25 H 1.48498 * 109.47298 * 329.99544 * 22 20 18 26 26 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 28 28 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 30 30 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 31 31 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 32 32 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 33 33 H 1.09000 * 109.47227 * 300.00275 * 6 4 3 34 34 H 1.09006 * 109.46717 * 59.99823 * 6 4 3 35 35 H 1.08998 * 109.46869 * 59.99496 * 7 6 4 36 36 H 1.08996 * 109.47485 * 180.02562 * 7 6 4 37 37 H 1.09004 * 109.47455 * 179.97438 * 8 7 6 38 38 H 1.09006 * 109.47074 * 300.00049 * 8 7 6 39 39 H 1.09002 * 109.47303 * 59.99741 * 9 8 7 40 40 H 1.09000 * 109.47218 * 180.02562 * 9 8 7 41 41 H 1.00900 * 111.00462 * 278.95376 * 12 10 4 42 42 H 1.09008 * 109.46786 * 300.00351 * 13 12 10 43 43 H 1.08998 * 109.47534 * 59.99635 * 13 12 10 44 44 H 0.97005 * 119.99825 * 359.97438 * 16 14 13 45 45 H 1.08998 * 109.47320 * 299.99832 * 17 16 14 46 46 H 1.09007 * 109.47214 * 59.99929 * 17 16 14 47 47 H 0.97005 * 119.99800 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8529 0.8409 6 6 4.0794 0.8331 -1.3083 7 6 5.6094 0.8337 -1.3093 8 6 6.1190 2.2709 -1.1838 9 6 5.6095 2.8803 0.1238 10 6 4.0800 2.8796 0.1251 11 1 3.7171 3.3137 1.0567 12 7 3.5899 3.6741 -1.0090 13 6 3.5272 5.1007 -0.6644 14 6 3.0206 5.8821 -1.8492 15 8 2.7399 5.3072 -2.8796 16 7 2.8795 7.2198 -1.7640 17 6 2.3876 7.9793 -2.9159 18 6 2.3221 9.4427 -2.5619 19 1 2.6177 9.7738 -1.5773 20 6 1.8857 10.3589 -3.4952 21 7 1.5262 9.9557 -4.6943 22 14 1.8051 12.1728 -3.0566 23 1 3.0987 12.8210 -3.3908 24 1 0.7133 12.8204 -3.8271 25 1 1.5391 12.3193 -1.6030 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.7160 -0.1906 -1.3979 34 1 3.7156 1.4228 -2.1499 35 1 5.9735 0.2444 -0.4677 36 1 5.9724 0.4000 -2.2411 37 1 7.2090 2.2713 -1.1841 38 1 5.7548 2.8603 -2.0254 39 1 5.9735 2.2910 0.9655 40 1 5.9722 3.9044 0.2130 41 1 4.1596 3.5248 -1.8283 42 1 2.8512 5.2414 0.1791 43 1 4.5226 5.4535 -0.3947 44 1 3.1037 7.6795 -0.9397 45 1 3.0639 7.8391 -3.7592 46 1 1.3923 7.6262 -3.1858 47 1 1.2195 10.6004 -5.3510 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775681876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:48 Heat of formation + Delta-G solvation = -77.312768 kcal Electronic energy + Delta-G solvation = -22744.890183 eV Core-core repulsion = 19539.703535 eV Total energy + Delta-G solvation = -3205.186648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.88198 -38.49594 -35.18722 -34.26765 -33.84601 -32.29303 -30.93560 -29.97436 -27.68317 -26.12505 -25.06262 -22.92198 -22.29092 -22.02445 -20.50432 -19.63727 -18.98598 -17.27829 -16.17069 -15.63076 -15.55449 -15.16552 -15.02484 -14.52146 -14.35156 -14.27646 -14.04798 -13.36725 -13.30196 -13.16215 -12.71792 -12.64666 -12.31628 -12.06351 -11.97662 -11.86621 -11.70838 -11.42021 -11.36579 -11.12248 -10.98744 -10.96608 -10.86770 -10.54142 -10.43876 -10.30847 -10.11235 -9.99084 -9.38421 -8.98270 -8.72139 -8.21849 -7.83456 -6.15652 -4.22538 3.24442 3.30560 3.33024 3.43490 3.88830 4.32617 4.50650 4.54542 4.65810 4.73684 4.95182 4.99637 5.13041 5.15069 5.20339 5.26861 5.32847 5.38525 5.41875 5.47595 5.50045 5.57911 5.63555 5.67286 5.76805 5.79380 5.86369 5.88387 5.92173 5.99962 6.05890 6.10443 6.19668 6.23411 6.33212 6.41586 6.61932 7.05456 7.34590 7.47384 7.52096 7.54500 7.69350 7.98793 8.66573 8.80655 9.15487 9.44355 10.94566 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021882 B = 0.003172 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.309171 B = 8826.122411 C = 9495.488832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.108 4.108 4 C -0.070 4.070 5 H 0.065 0.935 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.123 4.123 9 C -0.151 4.151 10 C 0.091 3.909 11 H 0.076 0.924 12 N -0.661 5.661 13 C 0.039 3.961 14 C 0.496 3.504 15 O -0.544 6.544 16 N -0.715 5.715 17 C 0.251 3.749 18 C -0.543 4.543 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.351 0.649 42 H 0.094 0.906 43 H 0.051 0.949 44 H 0.389 0.611 45 H 0.025 0.975 46 H 0.026 0.974 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.465 -18.380 12.389 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.145 4.145 4 C -0.088 4.088 5 H 0.083 0.917 6 C -0.155 4.155 7 C -0.156 4.156 8 C -0.161 4.161 9 C -0.190 4.190 10 C -0.019 4.019 11 H 0.094 0.906 12 N -0.296 5.296 13 C -0.094 4.094 14 C 0.280 3.720 15 O -0.422 6.422 16 N -0.365 5.365 17 C 0.130 3.870 18 C -0.581 4.581 19 H 0.081 0.919 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.173 0.827 42 H 0.112 0.888 43 H 0.069 0.931 44 H 0.221 0.779 45 H 0.043 0.957 46 H 0.044 0.956 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.504 -18.811 11.562 22.756 hybrid contribution 1.036 1.587 0.600 1.987 sum 6.540 -17.224 12.161 22.076 Atomic orbital electron populations 1.21772 0.96224 1.01032 1.01977 1.21600 0.95614 0.97717 1.01369 1.21544 0.94221 0.95668 1.03095 1.21092 0.95781 0.94413 0.97563 0.91700 1.21637 0.94570 1.00783 0.98537 1.21532 0.96365 0.96326 1.01353 1.21545 1.00131 0.96602 0.97802 1.22211 0.97538 1.00911 0.98374 1.21603 0.91777 0.94308 0.94244 0.90591 1.60304 1.58050 1.04901 1.06316 1.21872 1.00459 0.89349 0.97698 1.20397 0.79339 0.83062 0.89179 1.90658 1.50715 1.69548 1.31298 1.46448 1.65569 1.06346 1.18098 1.19072 0.94971 0.89608 0.83331 1.21234 1.46022 0.91364 0.99517 0.91945 1.24954 0.94834 0.99492 0.94768 1.69977 1.42991 1.34862 1.04449 0.86420 0.77823 0.84186 0.78503 1.20495 1.20996 1.19748 0.92986 0.92533 0.93310 0.92067 0.92828 0.90113 0.92708 0.92118 0.90808 0.92393 0.92214 0.92109 0.91735 0.91561 0.92118 0.82655 0.88786 0.93105 0.77858 0.95682 0.95566 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.13 -1.15 5.69 -26.73 -0.15 -1.31 16 3 C -0.11 -1.13 4.45 -26.73 -0.12 -1.25 16 4 C -0.07 -0.67 2.01 -90.62 -0.18 -0.85 16 5 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 6 C -0.12 -1.15 4.72 -26.73 -0.13 -1.27 16 7 C -0.12 -1.05 5.92 -26.73 -0.16 -1.20 16 8 C -0.12 -1.17 5.67 -26.73 -0.15 -1.32 16 9 C -0.15 -1.40 5.51 -26.76 -0.15 -1.55 16 10 C 0.09 0.94 2.30 -67.74 -0.16 0.78 16 11 H 0.08 0.76 7.80 -51.93 -0.40 0.35 16 12 N -0.66 -8.81 4.72 -108.02 -0.51 -9.32 16 13 C 0.04 0.55 5.96 -4.98 -0.03 0.52 16 14 C 0.50 9.86 7.87 -10.98 -0.09 9.77 16 15 O -0.54 -13.12 16.20 5.56 0.09 -13.03 16 16 N -0.72 -15.07 5.55 -61.47 -0.34 -15.41 16 17 C 0.25 6.71 5.43 -5.20 -0.03 6.68 16 18 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 19 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 22 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 1.06 7.76 -51.93 -0.40 0.65 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 34 H 0.07 0.87 7.21 -51.93 -0.37 0.50 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.71 6.26 -51.93 -0.32 0.38 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 41 H 0.35 5.04 5.26 -39.29 -0.21 4.83 16 42 H 0.09 1.18 8.06 -51.92 -0.42 0.77 16 43 H 0.05 0.63 7.43 -51.93 -0.39 0.24 16 44 H 0.39 6.99 8.32 -40.82 -0.34 6.65 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 47 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 363.08 15.07 5.47 5.47 Total: -1.00 -31.00 363.08 -9.49 -40.50 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -8.53 Total: 6.91 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -1.39 Total: -5.50 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.11 Total: -50.25 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.00 -9.49 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775681876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.818 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds