Wall clock time and date at job start Tue Mar 31 2020 05:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47057 * 2 1 4 4 C 1.53000 * 109.46539 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47484 * 304.99143 * 4 3 2 6 6 C 1.52996 * 109.47511 * 65.00029 * 4 3 2 7 7 C 1.52998 * 109.47211 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47343 * 299.99971 * 7 6 4 9 9 C 1.53005 * 109.47002 * 59.99839 * 8 7 6 10 10 C 1.52998 * 109.47203 * 300.00247 * 9 8 7 11 11 H 1.09002 * 109.46610 * 300.00155 * 10 9 8 12 12 N 1.46896 * 109.46896 * 180.02562 * 10 9 8 13 13 C 1.46893 * 111.00140 * 84.99966 * 12 10 9 14 14 C 1.50707 * 109.47264 * 179.97438 * 13 12 10 15 15 O 1.21281 * 119.99523 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99914 * 179.97438 * 14 13 12 17 17 C 1.46506 * 119.99778 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.46871 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99717 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 H 1.09000 * 109.47359 * 299.99915 * 1 2 3 27 27 H 1.08999 * 109.47161 * 60.00074 * 1 2 3 28 28 H 1.09001 * 109.47507 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46781 * 239.99592 * 2 1 3 30 30 H 1.09007 * 109.46943 * 120.00178 * 2 1 3 31 31 H 1.08990 * 109.47134 * 60.00367 * 3 2 1 32 32 H 1.09001 * 109.46793 * 299.99533 * 3 2 1 33 33 H 1.09000 * 109.47003 * 59.99932 * 6 4 3 34 34 H 1.08996 * 109.47283 * 299.99916 * 6 4 3 35 35 H 1.09006 * 109.47460 * 179.97438 * 7 6 4 36 36 H 1.09005 * 109.47246 * 60.00142 * 7 6 4 37 37 H 1.09000 * 109.47412 * 299.99943 * 8 7 6 38 38 H 1.09003 * 109.47449 * 179.97438 * 8 7 6 39 39 H 1.08999 * 109.46641 * 180.02562 * 9 8 7 40 40 H 1.09005 * 109.46849 * 60.00281 * 9 8 7 41 41 H 1.00902 * 110.99877 * 208.95164 * 12 10 9 42 42 H 1.09005 * 109.47251 * 59.99727 * 13 12 10 43 43 H 1.09002 * 109.47321 * 299.99643 * 13 12 10 44 44 H 0.97000 * 120.00556 * 0.02562 * 16 14 13 45 45 H 1.09005 * 109.46943 * 60.00092 * 17 16 14 46 46 H 1.09002 * 109.47064 * 300.00355 * 17 16 14 47 47 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8529 0.8410 6 6 4.0794 0.8329 -1.3082 7 6 5.6094 0.8334 -1.3091 8 6 6.1191 2.2706 -1.1836 9 6 5.6096 2.8801 0.1240 10 6 4.0796 2.8796 0.1249 11 1 3.7157 3.4689 -0.7168 12 7 3.5905 3.4653 1.3801 13 6 3.5273 4.9300 1.2881 14 6 3.0218 5.4939 2.5911 15 8 2.7423 4.7488 3.5063 16 7 2.8813 6.8260 2.7395 17 6 2.3894 7.3741 4.0059 18 6 2.3258 8.8768 3.9119 19 1 2.6218 9.3739 3.0000 20 6 1.8898 9.6171 4.9904 21 7 1.8338 10.9285 4.9082 22 14 1.3786 8.7574 6.5680 23 1 -0.0719 8.4439 6.5133 24 1 2.1518 7.4986 6.7187 25 1 1.6495 9.6464 7.7262 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.7158 1.4225 -2.1498 34 1 3.7161 -0.1908 -1.3978 35 1 5.9725 0.3988 -2.2405 36 1 5.9735 0.2440 -0.4675 37 1 5.7552 2.8600 -2.0252 38 1 7.2091 2.2709 -1.1838 39 1 5.9724 3.9041 0.2131 40 1 5.9736 2.2907 0.9657 41 1 2.6931 3.0798 1.6334 42 1 2.8503 5.2146 0.4825 43 1 4.5224 5.3245 1.0828 44 1 3.1052 7.4219 2.0076 45 1 3.0654 7.0891 4.8122 46 1 1.3939 6.9799 4.2102 47 1 1.5267 11.4493 5.6667 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775681878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:53 Heat of formation + Delta-G solvation = -75.145429 kcal Electronic energy + Delta-G solvation = -22532.312164 eV Core-core repulsion = 19327.219498 eV Total energy + Delta-G solvation = -3205.092665 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.79688 -38.69801 -35.15581 -34.86985 -34.15228 -32.34226 -31.06415 -29.98608 -28.14661 -26.33788 -25.34970 -22.89788 -21.94431 -21.37358 -20.72616 -20.08168 -19.70536 -17.38359 -16.34148 -15.74781 -15.54600 -15.46079 -15.16664 -14.60413 -14.46980 -14.28073 -14.12681 -13.79408 -13.39667 -13.07042 -12.95896 -12.73041 -12.58841 -12.41160 -12.15314 -12.00161 -11.82448 -11.58407 -11.36648 -11.29769 -11.09487 -11.01412 -10.85330 -10.75527 -10.63079 -10.30469 -10.04623 -9.96274 -9.48936 -9.15450 -8.77159 -8.37374 -8.11013 -6.21168 -4.23287 3.25545 3.28856 3.33988 3.43258 3.72921 4.31458 4.34512 4.39634 4.50559 4.61267 4.77103 4.93110 4.98739 5.03212 5.13035 5.14405 5.23987 5.30628 5.32345 5.35593 5.41261 5.44047 5.47559 5.56421 5.58911 5.64748 5.66871 5.80382 5.85093 5.86009 5.95455 5.98272 6.05123 6.10952 6.13961 6.16281 6.31180 6.79892 7.01481 7.08909 7.25769 7.39698 7.44313 8.15475 8.53607 8.76152 8.97172 9.39278 10.90822 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021389 B = 0.003209 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.753180 B = 8722.126577 C = 9617.965660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.123 4.123 4 C -0.088 4.088 5 H 0.080 0.920 6 C -0.112 4.112 7 C -0.120 4.120 8 C -0.119 4.119 9 C -0.109 4.109 10 C 0.094 3.906 11 H 0.042 0.958 12 N -0.670 5.670 13 C 0.041 3.959 14 C 0.498 3.502 15 O -0.546 6.546 16 N -0.708 5.708 17 C 0.221 3.779 18 C -0.543 4.543 19 H 0.079 0.921 20 C 0.077 3.923 21 N -0.893 5.893 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.260 1.260 25 H -0.283 1.283 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.351 0.649 42 H 0.054 0.946 43 H 0.097 0.903 44 H 0.396 0.604 45 H 0.025 0.975 46 H 0.019 0.981 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.260 -20.932 -15.332 26.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.160 4.160 4 C -0.107 4.107 5 H 0.098 0.902 6 C -0.149 4.149 7 C -0.158 4.158 8 C -0.157 4.157 9 C -0.147 4.147 10 C -0.016 4.016 11 H 0.060 0.940 12 N -0.306 5.306 13 C -0.092 4.092 14 C 0.283 3.717 15 O -0.424 6.424 16 N -0.357 5.357 17 C 0.099 3.901 18 C -0.581 4.581 19 H 0.097 0.903 20 C -0.127 4.127 21 N -0.530 5.530 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.185 1.185 25 H -0.209 1.209 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.173 0.827 42 H 0.072 0.928 43 H 0.115 0.885 44 H 0.229 0.771 45 H 0.043 0.957 46 H 0.037 0.963 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.600 -21.270 -14.231 26.001 hybrid contribution -0.970 0.319 -0.069 1.024 sum 3.629 -20.951 -14.300 25.624 Atomic orbital electron populations 1.21792 0.96005 1.01452 1.01946 1.21538 0.95716 0.96718 1.02001 1.21752 0.95004 0.97233 1.02058 1.21318 0.94799 0.95893 0.98679 0.90166 1.21597 0.95467 1.00809 0.97073 1.21549 0.95642 0.97003 1.01572 1.21543 1.00216 0.96053 0.97911 1.21548 0.94510 1.01171 0.97456 1.21542 0.95494 0.94242 0.90294 0.93962 1.60190 1.35148 1.03329 1.31883 1.21863 1.02110 0.89765 0.95442 1.20444 0.78860 0.83056 0.89370 1.90650 1.50878 1.58688 1.42229 1.46170 1.65498 1.05822 1.18233 1.19471 0.94317 0.94437 0.81858 1.21103 1.46336 0.88650 1.02031 0.90279 1.24805 0.94475 0.94728 0.98658 1.69885 1.46381 1.05004 1.31771 0.86809 0.79773 0.80205 0.82864 1.19878 1.18456 1.20893 0.92553 0.92901 0.92925 0.91948 0.91930 0.91560 0.92099 0.92128 0.91644 0.92262 0.91908 0.92232 0.91974 0.92028 0.91149 0.82653 0.92820 0.88509 0.77104 0.95707 0.96274 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -0.97 5.69 -26.73 -0.15 -1.12 16 3 C -0.12 -1.09 4.55 -26.73 -0.12 -1.21 16 4 C -0.09 -0.79 1.85 -90.62 -0.17 -0.96 16 5 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 6 C -0.11 -0.83 4.96 -26.73 -0.13 -0.97 16 7 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 8 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 9 C -0.11 -1.08 5.43 -26.73 -0.15 -1.22 16 10 C 0.09 0.97 1.97 -67.71 -0.13 0.84 16 11 H 0.04 0.43 7.80 -51.93 -0.40 0.03 16 12 N -0.67 -8.97 5.93 -107.99 -0.64 -9.61 16 13 C 0.04 0.57 5.96 -4.98 -0.03 0.54 16 14 C 0.50 9.56 7.87 -10.98 -0.09 9.47 16 15 O -0.55 -12.60 16.20 5.56 0.09 -12.51 16 16 N -0.71 -14.43 5.55 -61.47 -0.34 -14.77 16 17 C 0.22 5.51 4.50 -5.19 -0.02 5.49 16 18 C -0.54 -15.02 9.83 -34.44 -0.34 -15.36 16 19 H 0.08 2.27 7.84 -52.49 -0.41 1.85 16 20 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 21 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 22 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.68 6.03 -51.93 -0.31 0.37 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.35 4.90 5.80 -39.29 -0.23 4.67 16 42 H 0.05 0.65 8.06 -51.93 -0.42 0.23 16 43 H 0.10 1.22 7.43 -51.93 -0.39 0.83 16 44 H 0.40 7.05 8.32 -40.82 -0.34 6.71 16 45 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 46 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 47 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -31.46 362.35 -9.28 -40.74 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -8.58 Total: 5.00 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -1.38 Total: -5.40 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.21 Total: -50.28 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.46 -9.28 -40.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775681878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.404 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds